Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0450

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0449 and DvMF_0450 are separated by 278 nucleotidesDvMF_0450 and DvMF_0451 are separated by 83 nucleotides DvMF_0449: DvMF_0449 - NAD+ synthetase (RefSeq), at 525,570 to 527,240 _0449 DvMF_0450: DvMF_0450 - 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) (from data), at 527,519 to 528,298 _0450 DvMF_0451: DvMF_0451 - DNA ligase, NAD-dependent (RefSeq), at 528,382 to 530,808 _0451 Position (kb) 527 528 529Strain fitness (log2 ratio) -1 0 1at 527.653 kb on + strand, within DvMF_0450at 527.781 kb on - strand, within DvMF_0450at 527.913 kb on + strand, within DvMF_0450at 528.225 kb on - strandat 528.549 kb on + strandat 528.632 kb on + strand, within DvMF_0451

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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527,653 + DvMF_0450 0.17 -1.7
527,781 - DvMF_0450 0.34 -0.9
527,913 + DvMF_0450 0.51 -0.8
528,225 - -0.3
528,549 + -0.4
528,632 + DvMF_0451 0.10 +0.6

Or see this region's nucleotide sequence