Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0434

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntpyrG and DvMF_0434 are separated by 517 nucleotidesDvMF_0434 and DvMF_0435 are separated by 286 nucleotidesDvMF_0435 and DvMF_0436 are separated by 241 nucleotides DvMF_0433: pyrG - CTP synthetase (RefSeq), at 507,089 to 508,741 pyrG DvMF_0434: DvMF_0434 - Phosphoribosylformylglycinamidine synthase (RefSeq), at 509,259 to 510,068 _0434 DvMF_0435: DvMF_0435 - hypothetical protein (RefSeq), at 510,355 to 510,753 _0435 DvMF_0436: DvMF_0436 - hypothetical protein (RefSeq), at 510,995 to 511,432 _0436 Position (kb) 509 510 511Strain fitness (log2 ratio) -3 -2 -1 0 1at 508.932 kb on + strandat 508.938 kb on - strandat 508.979 kb on + strandat 508.979 kb on + strandat 508.979 kb on + strandat 509.098 kb on - strandat 509.187 kb on - strandat 509.395 kb on + strand, within DvMF_0434at 509.596 kb on - strand, within DvMF_0434at 509.689 kb on + strand, within DvMF_0434at 509.973 kb on - strand, within DvMF_0434at 510.480 kb on + strand, within DvMF_0435at 510.820 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
remove
508,932 + -0.1
508,938 - -0.2
508,979 + -0.3
508,979 + +0.1
508,979 + -0.1
509,098 - +0.3
509,187 - -0.5
509,395 + DvMF_0434 0.17 -1.5
509,596 - DvMF_0434 0.42 -2.9
509,689 + DvMF_0434 0.53 -2.5
509,973 - DvMF_0434 0.88 -3.3
510,480 + DvMF_0435 0.31 -0.6
510,820 - -1.1

Or see this region's nucleotide sequence