Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0431

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0429 and DvMF_0430 overlap by 4 nucleotidesDvMF_0430 and DvMF_0431 overlap by 4 nucleotidesDvMF_0431 and DvMF_0432 overlap by 11 nucleotides DvMF_0429: DvMF_0429 - OstA family protein (RefSeq), at 503,665 to 504,339 _0429 DvMF_0430: DvMF_0430 - protein of unknown function DUF1239 (RefSeq), at 504,336 to 505,145 _0430 DvMF_0431: DvMF_0431 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family (RefSeq), at 505,142 to 505,669 _0431 DvMF_0432: DvMF_0432 - 2-dehydro-3-deoxyphosphooctonate aldolase (RefSeq), at 505,659 to 506,471 _0432 Position (kb) 505 506Strain fitness (log2 ratio) -3 -2 -1 0 1at 504.381 kb on + strandat 505.332 kb on - strand, within DvMF_0431at 505.382 kb on - strand, within DvMF_0431at 506.526 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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504,381 + -0.3
505,332 - DvMF_0431 0.36 -1.5
505,382 - DvMF_0431 0.45 -0.2
506,526 - -3.3

Or see this region's nucleotide sequence