Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0376 and DvMF_0377 are separated by 52 nucleotides DvMF_0377 and DvMF_0378 are separated by 277 nucleotides DvMF_0378 and DvMF_R0018 are separated by 149 nucleotides DvMF_R0018 and DvMF_0379 are separated by 258 nucleotides
DvMF_0376: DvMF_0376 - permease YjgP/YjgQ family protein (RefSeq), at 442,813 to 443,952
_0376
DvMF_0377: DvMF_0377 - hypothetical protein (RefSeq), at 444,005 to 444,202
_0377
DvMF_0378: DvMF_0378 - undecaprenol kinase (RefSeq), at 444,480 to 445,277
_0378
DvMF_R0018: DvMF_R0018 - tRNA-Met (RefSeq), at 445,427 to 445,503
_R0018
DvMF_0379: DvMF_0379 - natural resistance-associated macrophage protein (RefSeq), at 445,762 to 447,087
_0379
Position (kb) 444
445
446 Strain fitness (log2 ratio) -2
-1
0
1 at 444.437 kb on - strand at 444.466 kb on + strand at 444.732 kb on - strand, within DvMF_0378 at 445.174 kb on + strand, within DvMF_0378 at 445.182 kb on - strand, within DvMF_0378 at 445.234 kb on + strand at 445.327 kb on - strand at 445.621 kb on + strand at 445.710 kb on + strand at 445.710 kb on + strand at 445.710 kb on + strand at 445.718 kb on - strand at 445.718 kb on - strand at 445.903 kb on - strand, within DvMF_0379 at 445.909 kb on - strand, within DvMF_0379 at 446.007 kb on + strand, within DvMF_0379 at 446.014 kb on + strand, within DvMF_0379 at 446.015 kb on - strand, within DvMF_0379 at 446.037 kb on - strand, within DvMF_0379 at 446.230 kb on + strand, within DvMF_0379 at 446.238 kb on - strand, within DvMF_0379
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml remove 444,437 - -0.6 444,466 + -0.4 444,732 - DvMF_0378 0.32 -1.0 445,174 + DvMF_0378 0.87 -2.0 445,182 - DvMF_0378 0.88 +0.4 445,234 + -0.9 445,327 - -0.5 445,621 + -0.2 445,710 + -0.4 445,710 + -0.7 445,710 + -0.1 445,718 - -0.8 445,718 - -0.3 445,903 - DvMF_0379 0.11 -0.9 445,909 - DvMF_0379 0.11 -1.4 446,007 + DvMF_0379 0.18 -0.6 446,014 + DvMF_0379 0.19 -0.1 446,015 - DvMF_0379 0.19 -0.9 446,037 - DvMF_0379 0.21 -0.7 446,230 + DvMF_0379 0.35 -0.4 446,238 - DvMF_0379 0.36 -0.8
Or see this region's nucleotide sequence