Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0309

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0308 and rpsA are separated by 272 nucleotidesrpsA and DvMF_0310 are separated by 152 nucleotidesDvMF_0310 and DvMF_0311 are separated by 368 nucleotides DvMF_0308: DvMF_0308 - protease Do (RefSeq), at 355,405 to 356,850 _0308 DvMF_0309: rpsA - 30S ribosomal protein S1 (RefSeq), at 357,123 to 358,817 rpsA DvMF_0310: DvMF_0310 - PpiC-type peptidyl-prolyl cis-trans isomerase (RefSeq), at 358,970 to 359,254 _0310 DvMF_0311: DvMF_0311 - heat shock protein Hsp20 (RefSeq), at 359,623 to 360,051 _0311 Position (kb) 357 358 359Strain fitness (log2 ratio) -2 -1 0 1at 356.124 kb on + strand, within DvMF_0308at 356.280 kb on - strand, within DvMF_0308at 357.006 kb on - strandat 357.011 kb on - strandat 357.308 kb on + strand, within rpsAat 357.316 kb on - strand, within rpsAat 357.431 kb on - strand, within rpsAat 357.433 kb on + strand, within rpsAat 357.447 kb on - strand, within rpsAat 357.482 kb on - strand, within rpsAat 357.629 kb on - strand, within rpsAat 357.689 kb on - strand, within rpsAat 358.084 kb on - strand, within rpsAat 358.532 kb on + strand, within rpsAat 358.532 kb on + strand, within rpsAat 359.334 kb on + strandat 359.561 kb on + strandat 359.697 kb on + strand, within DvMF_0311at 359.810 kb on + strand, within DvMF_0311

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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356,124 + DvMF_0308 0.50 +1.3
356,280 - DvMF_0308 0.61 -1.8
357,006 - -1.3
357,011 - -0.5
357,308 + rpsA DvMF_0309 0.11 -2.0
357,316 - rpsA DvMF_0309 0.11 -2.1
357,431 - rpsA DvMF_0309 0.18 -0.2
357,433 + rpsA DvMF_0309 0.18 -1.1
357,447 - rpsA DvMF_0309 0.19 -1.6
357,482 - rpsA DvMF_0309 0.21 -1.2
357,629 - rpsA DvMF_0309 0.30 -2.3
357,689 - rpsA DvMF_0309 0.33 -2.0
358,084 - rpsA DvMF_0309 0.57 -2.2
358,532 + rpsA DvMF_0309 0.83 -1.6
358,532 + rpsA DvMF_0309 0.83 -2.0
359,334 + -0.5
359,561 + -0.2
359,697 + DvMF_0311 0.17 -0.5
359,810 + DvMF_0311 0.44 -0.0

Or see this region's nucleotide sequence