Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0155

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0153 and ilvH are separated by 12 nucleotidesilvH and DvMF_0155 are separated by 335 nucleotidesDvMF_0155 and DvMF_0156 are separated by 395 nucleotides DvMF_0153: DvMF_0153 - acetolactate synthase, large subunit, biosynthetic type (RefSeq), at 167,254 to 168,942 _0153 DvMF_0154: ilvH - acetolactate synthase 3 regulatory subunit (RefSeq), at 168,955 to 169,446 ilvH DvMF_0155: DvMF_0155 - ketol-acid reductoisomerase (RefSeq), at 169,782 to 170,774 _0155 DvMF_0156: DvMF_0156 - NADPH-dependent FMN reductase (RefSeq), at 171,170 to 171,736 _0156 Position (kb) 169 170 171Strain fitness (log2 ratio) -1 0 1at 168.944 kb on - strandat 169.002 kb on + strandat 169.344 kb on + strand, within ilvHat 169.429 kb on - strandat 169.802 kb on + strandat 169.994 kb on - strand, within DvMF_0155at 170.279 kb on - strand, within DvMF_0155at 170.918 kb on + strandat 171.472 kb on + strand, within DvMF_0156at 171.732 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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168,944 - +0.2
169,002 + +0.3
169,344 + ilvH DvMF_0154 0.79 -0.1
169,429 - -0.4
169,802 + +0.8
169,994 - DvMF_0155 0.21 -1.3
170,279 - DvMF_0155 0.50 -0.9
170,918 + -0.1
171,472 + DvMF_0156 0.53 -0.7
171,732 - -1.1

Or see this region's nucleotide sequence