Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0018

Experiment: MoYLS4 with Sisomicin 0.0156 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0016 and DvMF_0017 are separated by 71 nucleotidesDvMF_0017 and DvMF_0018 are separated by 3 nucleotidesDvMF_0018 and DvMF_0019 are separated by 37 nucleotides DvMF_0016: DvMF_0016 - transferase, putative (RefSeq), at 21,831 to 22,622 _0016 DvMF_0017: DvMF_0017 - Methyltransferase type 11 (RefSeq), at 22,694 to 23,458 _0017 DvMF_0018: DvMF_0018 - adenylylsulfate kinase (RefSeq), at 23,462 to 24,049 _0018 DvMF_0019: DvMF_0019 - hypothetical protein (RefSeq), at 24,087 to 25,421 _0019 Position (kb) 23 24 25Strain fitness (log2 ratio) -1 0 1at 23.086 kb on + strand, within DvMF_0017at 23.304 kb on + strand, within DvMF_0017at 23.334 kb on + strand, within DvMF_0017at 23.460 kb on - strandat 23.723 kb on - strand, within DvMF_0018at 24.058 kb on + strandat 24.058 kb on + strandat 24.066 kb on - strandat 24.066 kb on - strandat 24.109 kb on - strandat 24.463 kb on + strand, within DvMF_0019at 24.764 kb on + strand, within DvMF_0019at 24.894 kb on + strand, within DvMF_0019at 24.979 kb on + strand, within DvMF_0019at 24.980 kb on - strand, within DvMF_0019at 25.033 kb on - strand, within DvMF_0019at 25.049 kb on + strand, within DvMF_0019

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Sisomicin 0.0156 mg/ml
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23,086 + DvMF_0017 0.51 -0.0
23,304 + DvMF_0017 0.80 -0.7
23,334 + DvMF_0017 0.84 -0.8
23,460 - -0.3
23,723 - DvMF_0018 0.44 -1.4
24,058 + -0.3
24,058 + -1.0
24,066 - -0.4
24,066 - -0.6
24,109 - -0.2
24,463 + DvMF_0019 0.28 -0.5
24,764 + DvMF_0019 0.51 -0.7
24,894 + DvMF_0019 0.60 -0.3
24,979 + DvMF_0019 0.67 -0.7
24,980 - DvMF_0019 0.67 -0.8
25,033 - DvMF_0019 0.71 +0.3
25,049 + DvMF_0019 0.72 -0.7

Or see this region's nucleotide sequence