Experiment: Inosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2928 and Shewana3_2929 are separated by 167 nucleotides Shewana3_2929 and Shewana3_2930 are separated by 109 nucleotides
Shewana3_2928: Shewana3_2928 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 3,509,101 to 3,510,564
_2928
Shewana3_2929: Shewana3_2929 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 3,510,732 to 3,513,761
_2929
Shewana3_2930: Shewana3_2930 - starch synthase catalytic subunit (RefSeq), at 3,513,871 to 3,515,460
_2930
Position (kb)
3510
3511
3512
3513
3514 Strain fitness (log2 ratio)
-2
-1
0
1 at 3509.850 kb on + strand, within Shewana3_2928 at 3510.440 kb on + strand at 3510.450 kb on - strand at 3510.793 kb on + strand at 3510.850 kb on + strand at 3510.925 kb on - strand at 3511.011 kb on + strand at 3511.011 kb on + strand at 3511.112 kb on - strand, within Shewana3_2929 at 3511.184 kb on + strand, within Shewana3_2929 at 3511.194 kb on - strand, within Shewana3_2929 at 3511.216 kb on - strand, within Shewana3_2929 at 3511.252 kb on + strand, within Shewana3_2929 at 3511.360 kb on + strand, within Shewana3_2929 at 3511.402 kb on + strand, within Shewana3_2929 at 3511.888 kb on + strand, within Shewana3_2929 at 3512.073 kb on - strand, within Shewana3_2929 at 3512.368 kb on - strand, within Shewana3_2929 at 3512.458 kb on - strand, within Shewana3_2929 at 3512.466 kb on - strand, within Shewana3_2929 at 3512.597 kb on - strand, within Shewana3_2929 at 3512.751 kb on + strand, within Shewana3_2929 at 3512.752 kb on + strand, within Shewana3_2929 at 3512.827 kb on - strand, within Shewana3_2929 at 3512.894 kb on - strand, within Shewana3_2929 at 3513.073 kb on - strand, within Shewana3_2929 at 3513.183 kb on + strand, within Shewana3_2929 at 3513.236 kb on + strand, within Shewana3_2929 at 3513.236 kb on + strand, within Shewana3_2929 at 3513.439 kb on + strand, within Shewana3_2929 at 3513.802 kb on - strand at 3513.837 kb on - strand at 3513.972 kb on + strand at 3514.021 kb on - strand at 3514.081 kb on - strand, within Shewana3_2930 at 3514.101 kb on + strand, within Shewana3_2930 at 3514.106 kb on + strand, within Shewana3_2930 at 3514.114 kb on - strand, within Shewana3_2930 at 3514.223 kb on - strand, within Shewana3_2930 at 3514.313 kb on - strand, within Shewana3_2930 at 3514.468 kb on - strand, within Shewana3_2930 at 3514.659 kb on + strand, within Shewana3_2930 at 3514.760 kb on - strand, within Shewana3_2930
Per-strain Table
Position Strand Gene LocusTag Fraction Inosine (C) remove 3,509,850 + Shewana3_2928 0.51 -0.2 3,510,440 + +0.0 3,510,450 - +0.5 3,510,793 + -1.1 3,510,850 + -0.5 3,510,925 - -1.0 3,511,011 + -0.5 3,511,011 + +0.3 3,511,112 - Shewana3_2929 0.13 +0.1 3,511,184 + Shewana3_2929 0.15 -0.5 3,511,194 - Shewana3_2929 0.15 -1.2 3,511,216 - Shewana3_2929 0.16 -0.6 3,511,252 + Shewana3_2929 0.17 +0.3 3,511,360 + Shewana3_2929 0.21 +0.2 3,511,402 + Shewana3_2929 0.22 -1.7 3,511,888 + Shewana3_2929 0.38 +0.4 3,512,073 - Shewana3_2929 0.44 +0.3 3,512,368 - Shewana3_2929 0.54 -0.2 3,512,458 - Shewana3_2929 0.57 -0.6 3,512,466 - Shewana3_2929 0.57 +0.6 3,512,597 - Shewana3_2929 0.62 -0.7 3,512,751 + Shewana3_2929 0.67 +0.2 3,512,752 + Shewana3_2929 0.67 -0.5 3,512,827 - Shewana3_2929 0.69 +0.3 3,512,894 - Shewana3_2929 0.71 -0.2 3,513,073 - Shewana3_2929 0.77 -0.4 3,513,183 + Shewana3_2929 0.81 +0.1 3,513,236 + Shewana3_2929 0.83 -0.6 3,513,236 + Shewana3_2929 0.83 -0.9 3,513,439 + Shewana3_2929 0.89 -1.0 3,513,802 - -0.9 3,513,837 - -0.5 3,513,972 + +0.9 3,514,021 - +0.3 3,514,081 - Shewana3_2930 0.13 -0.7 3,514,101 + Shewana3_2930 0.14 +0.2 3,514,106 + Shewana3_2930 0.15 -0.4 3,514,114 - Shewana3_2930 0.15 -1.9 3,514,223 - Shewana3_2930 0.22 +0.1 3,514,313 - Shewana3_2930 0.28 +0.1 3,514,468 - Shewana3_2930 0.38 -0.0 3,514,659 + Shewana3_2930 0.50 +0.1 3,514,760 - Shewana3_2930 0.56 +0.4
Or see this region's nucleotide sequence