Experiment: Inosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2824 and Shewana3_2825 overlap by 14 nucleotides Shewana3_2825 and Shewana3_2826 are separated by 131 nucleotides Shewana3_2826 and Shewana3_2827 overlap by 4 nucleotides
Shewana3_2824: Shewana3_2824 - tRNA pseudouridine synthase C (RefSeq), at 3,373,305 to 3,374,159
_2824
Shewana3_2825: Shewana3_2825 - dTDP-4-dehydrorhamnose 3,5-epimerase (RefSeq), at 3,374,146 to 3,374,481
_2825
Shewana3_2826: Shewana3_2826 - hypothetical protein (RefSeq), at 3,374,613 to 3,375,626
_2826
Shewana3_2827: Shewana3_2827 - hypothetical protein (RefSeq), at 3,375,623 to 3,376,009
_2827
Position (kb)
3374
3375
3376 Strain fitness (log2 ratio)
-1
0
1 at 3373.744 kb on + strand, within Shewana3_2824 at 3373.773 kb on + strand, within Shewana3_2824 at 3373.781 kb on + strand, within Shewana3_2824 at 3373.781 kb on - strand, within Shewana3_2824 at 3373.991 kb on + strand, within Shewana3_2824 at 3373.991 kb on + strand, within Shewana3_2824 at 3374.046 kb on - strand, within Shewana3_2824 at 3374.080 kb on - strand at 3374.080 kb on - strand at 3374.199 kb on - strand, within Shewana3_2825 at 3374.224 kb on + strand, within Shewana3_2825 at 3374.243 kb on - strand, within Shewana3_2825 at 3374.289 kb on - strand, within Shewana3_2825 at 3374.290 kb on - strand, within Shewana3_2825 at 3374.338 kb on - strand, within Shewana3_2825 at 3374.396 kb on + strand, within Shewana3_2825 at 3374.486 kb on - strand at 3374.755 kb on - strand, within Shewana3_2826 at 3374.765 kb on - strand, within Shewana3_2826 at 3374.842 kb on + strand, within Shewana3_2826 at 3374.891 kb on + strand, within Shewana3_2826 at 3375.007 kb on - strand, within Shewana3_2826 at 3375.098 kb on + strand, within Shewana3_2826 at 3375.117 kb on + strand, within Shewana3_2826 at 3375.201 kb on + strand, within Shewana3_2826 at 3375.388 kb on + strand, within Shewana3_2826 at 3375.398 kb on + strand, within Shewana3_2826 at 3375.411 kb on + strand, within Shewana3_2826 at 3375.433 kb on + strand, within Shewana3_2826 at 3375.433 kb on + strand, within Shewana3_2826 at 3375.434 kb on - strand, within Shewana3_2826 at 3375.458 kb on + strand, within Shewana3_2826 at 3375.605 kb on + strand at 3375.698 kb on + strand, within Shewana3_2827 at 3376.079 kb on + strand at 3376.087 kb on - strand at 3376.164 kb on + strand at 3376.170 kb on - strand at 3376.385 kb on - strand at 3376.414 kb on + strand at 3376.422 kb on - strand at 3376.466 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Inosine (C) remove 3,373,744 + Shewana3_2824 0.51 -0.2 3,373,773 + Shewana3_2824 0.55 -0.3 3,373,781 + Shewana3_2824 0.56 -1.3 3,373,781 - Shewana3_2824 0.56 -1.4 3,373,991 + Shewana3_2824 0.80 -0.1 3,373,991 + Shewana3_2824 0.80 +0.7 3,374,046 - Shewana3_2824 0.87 -0.5 3,374,080 - -0.2 3,374,080 - +0.5 3,374,199 - Shewana3_2825 0.16 +0.9 3,374,224 + Shewana3_2825 0.23 -0.4 3,374,243 - Shewana3_2825 0.29 +0.4 3,374,289 - Shewana3_2825 0.43 +0.1 3,374,290 - Shewana3_2825 0.43 -0.3 3,374,338 - Shewana3_2825 0.57 -0.6 3,374,396 + Shewana3_2825 0.74 -0.6 3,374,486 - +0.3 3,374,755 - Shewana3_2826 0.14 +0.2 3,374,765 - Shewana3_2826 0.15 +1.0 3,374,842 + Shewana3_2826 0.23 -0.2 3,374,891 + Shewana3_2826 0.27 -0.6 3,375,007 - Shewana3_2826 0.39 +0.3 3,375,098 + Shewana3_2826 0.48 +0.0 3,375,117 + Shewana3_2826 0.50 +0.1 3,375,201 + Shewana3_2826 0.58 +0.9 3,375,388 + Shewana3_2826 0.76 +1.5 3,375,398 + Shewana3_2826 0.77 +0.5 3,375,411 + Shewana3_2826 0.79 +0.2 3,375,433 + Shewana3_2826 0.81 -0.2 3,375,433 + Shewana3_2826 0.81 -0.5 3,375,434 - Shewana3_2826 0.81 -0.5 3,375,458 + Shewana3_2826 0.83 +0.2 3,375,605 + +0.0 3,375,698 + Shewana3_2827 0.19 -1.3 3,376,079 + -0.3 3,376,087 - +0.3 3,376,164 + +0.3 3,376,170 - -0.0 3,376,385 - +0.3 3,376,414 + -0.7 3,376,422 - +0.0 3,376,466 + -0.4
Or see this region's nucleotide sequence