Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2819

Experiment: Inosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdapD and Shewana3_2819 are separated by 268 nucleotidesShewana3_2819 and Shewana3_2820 are separated by 74 nucleotides Shewana3_2818: dapD - 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase (RefSeq), at 3,366,292 to 3,367,116 dapD Shewana3_2819: Shewana3_2819 - hypothetical protein (RefSeq), at 3,367,385 to 3,367,738 _2819 Shewana3_2820: Shewana3_2820 - metal dependent phosphohydrolase (RefSeq), at 3,367,813 to 3,369,741 _2820 Position (kb) 3367 3368Strain fitness (log2 ratio) -1 0 1at 3367.265 kb on - strandat 3367.279 kb on + strandat 3367.426 kb on - strand, within Shewana3_2819at 3367.431 kb on + strand, within Shewana3_2819at 3367.439 kb on - strand, within Shewana3_2819at 3367.589 kb on + strand, within Shewana3_2819at 3367.675 kb on - strand, within Shewana3_2819at 3367.763 kb on - strandat 3367.795 kb on - strandat 3367.802 kb on - strandat 3367.961 kb on - strandat 3368.251 kb on - strand, within Shewana3_2820at 3368.357 kb on - strand, within Shewana3_2820at 3368.390 kb on - strand, within Shewana3_2820at 3368.390 kb on - strand, within Shewana3_2820at 3368.600 kb on - strand, within Shewana3_2820at 3368.621 kb on + strand, within Shewana3_2820

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
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3,367,265 - -0.6
3,367,279 + -1.4
3,367,426 - Shewana3_2819 0.12 +0.5
3,367,431 + Shewana3_2819 0.13 +0.3
3,367,439 - Shewana3_2819 0.15 -0.5
3,367,589 + Shewana3_2819 0.58 +0.5
3,367,675 - Shewana3_2819 0.82 +0.3
3,367,763 - -1.7
3,367,795 - +0.4
3,367,802 - +0.6
3,367,961 - -0.6
3,368,251 - Shewana3_2820 0.23 +0.4
3,368,357 - Shewana3_2820 0.28 +0.7
3,368,390 - Shewana3_2820 0.30 -0.0
3,368,390 - Shewana3_2820 0.30 +0.4
3,368,600 - Shewana3_2820 0.41 +1.2
3,368,621 + Shewana3_2820 0.42 +0.3

Or see this region's nucleotide sequence