Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1628

Experiment: Inosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1626 and Shewana3_1627 are separated by 18 nucleotidesShewana3_1627 and Shewana3_1628 are separated by 151 nucleotidesShewana3_1628 and Shewana3_1629 are separated by 160 nucleotidesShewana3_1629 and Shewana3_1630 are separated by 366 nucleotides Shewana3_1626: Shewana3_1626 - pyridoxamine 5'-phosphate oxidase (RefSeq), at 1,915,257 to 1,915,895 _1626 Shewana3_1627: Shewana3_1627 - hypothetical protein (RefSeq), at 1,915,914 to 1,916,366 _1627 Shewana3_1628: Shewana3_1628 - YceI family protein (RefSeq), at 1,916,518 to 1,917,093 _1628 Shewana3_1629: Shewana3_1629 - hypothetical protein (RefSeq), at 1,917,254 to 1,917,610 _1629 Shewana3_1630: Shewana3_1630 - hypothetical protein (RefSeq), at 1,917,977 to 1,918,360 _1630 Position (kb) 1916 1917 1918Strain fitness (log2 ratio) -1 0 1at 1915.904 kb on + strandat 1915.920 kb on - strandat 1915.922 kb on + strandat 1916.732 kb on + strand, within Shewana3_1628at 1916.745 kb on + strand, within Shewana3_1628at 1916.850 kb on + strand, within Shewana3_1628at 1916.850 kb on + strand, within Shewana3_1628at 1916.858 kb on - strand, within Shewana3_1628at 1917.061 kb on + strandat 1917.424 kb on + strand, within Shewana3_1629at 1917.555 kb on - strand, within Shewana3_1629at 1917.956 kb on - strandat 1917.983 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
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1,915,904 + -0.8
1,915,920 - +0.3
1,915,922 + -1.0
1,916,732 + Shewana3_1628 0.37 +1.3
1,916,745 + Shewana3_1628 0.39 +0.8
1,916,850 + Shewana3_1628 0.58 -0.9
1,916,850 + Shewana3_1628 0.58 +1.5
1,916,858 - Shewana3_1628 0.59 -0.5
1,917,061 + +1.4
1,917,424 + Shewana3_1629 0.48 +0.3
1,917,555 - Shewana3_1629 0.84 +0.6
1,917,956 - -0.1
1,917,983 - -0.1

Or see this region's nucleotide sequence