Experiment: Inosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_1508 and Shewana3_1509 overlap by 4 nucleotides Shewana3_1509 and Shewana3_1510 overlap by 1 nucleotides Shewana3_1510 and Shewana3_1511 are separated by 579 nucleotides
Shewana3_1508: Shewana3_1508 - IucA/IucC family protein (RefSeq), at 1,755,913 to 1,757,808
_1508
Shewana3_1509: Shewana3_1509 - siderophore biosynthesis protein, putative (RefSeq), at 1,757,805 to 1,758,470
_1509
Shewana3_1510: Shewana3_1510 - siderophore biosynthesis protein (RefSeq), at 1,758,470 to 1,759,960
_1510
Shewana3_1511: Shewana3_1511 - hypothetical protein (RefSeq), at 1,760,540 to 1,760,821
_1511
Position (kb)
1758
1759
1760 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1757.490 kb on - strand, within Shewana3_1508 at 1757.699 kb on - strand at 1757.816 kb on + strand at 1757.872 kb on + strand, within Shewana3_1509 at 1758.090 kb on - strand, within Shewana3_1509 at 1758.147 kb on + strand, within Shewana3_1509 at 1758.178 kb on + strand, within Shewana3_1509 at 1758.178 kb on + strand, within Shewana3_1509 at 1758.186 kb on - strand, within Shewana3_1509 at 1758.435 kb on - strand at 1758.664 kb on - strand, within Shewana3_1510 at 1758.764 kb on - strand, within Shewana3_1510 at 1758.774 kb on - strand, within Shewana3_1510 at 1758.969 kb on + strand, within Shewana3_1510 at 1759.054 kb on - strand, within Shewana3_1510 at 1759.301 kb on - strand, within Shewana3_1510 at 1759.440 kb on + strand, within Shewana3_1510 at 1759.502 kb on + strand, within Shewana3_1510 at 1759.510 kb on - strand, within Shewana3_1510 at 1759.691 kb on - strand, within Shewana3_1510 at 1760.226 kb on + strand at 1760.392 kb on - strand at 1760.643 kb on - strand, within Shewana3_1511 at 1760.835 kb on + strand at 1760.869 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Inosine (C) remove 1,757,490 - Shewana3_1508 0.83 -0.5 1,757,699 - -0.8 1,757,816 + -0.4 1,757,872 + Shewana3_1509 0.10 -2.4 1,758,090 - Shewana3_1509 0.43 +0.2 1,758,147 + Shewana3_1509 0.51 -1.1 1,758,178 + Shewana3_1509 0.56 +0.1 1,758,178 + Shewana3_1509 0.56 -2.9 1,758,186 - Shewana3_1509 0.57 +0.6 1,758,435 - -0.0 1,758,664 - Shewana3_1510 0.13 +0.7 1,758,764 - Shewana3_1510 0.20 +0.9 1,758,774 - Shewana3_1510 0.20 +0.2 1,758,969 + Shewana3_1510 0.33 +0.7 1,759,054 - Shewana3_1510 0.39 +0.8 1,759,301 - Shewana3_1510 0.56 +0.2 1,759,440 + Shewana3_1510 0.65 -0.2 1,759,502 + Shewana3_1510 0.69 -0.2 1,759,510 - Shewana3_1510 0.70 +0.6 1,759,691 - Shewana3_1510 0.82 -0.0 1,760,226 + +0.0 1,760,392 - +0.6 1,760,643 - Shewana3_1511 0.37 +1.3 1,760,835 + -0.2 1,760,869 - -0.2
Or see this region's nucleotide sequence