Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1510

Experiment: Inosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1508 and Shewana3_1509 overlap by 4 nucleotidesShewana3_1509 and Shewana3_1510 overlap by 1 nucleotidesShewana3_1510 and Shewana3_1511 are separated by 579 nucleotides Shewana3_1508: Shewana3_1508 - IucA/IucC family protein (RefSeq), at 1,755,913 to 1,757,808 _1508 Shewana3_1509: Shewana3_1509 - siderophore biosynthesis protein, putative (RefSeq), at 1,757,805 to 1,758,470 _1509 Shewana3_1510: Shewana3_1510 - siderophore biosynthesis protein (RefSeq), at 1,758,470 to 1,759,960 _1510 Shewana3_1511: Shewana3_1511 - hypothetical protein (RefSeq), at 1,760,540 to 1,760,821 _1511 Position (kb) 1758 1759 1760Strain fitness (log2 ratio) -3 -2 -1 0 1at 1757.490 kb on - strand, within Shewana3_1508at 1757.699 kb on - strandat 1757.816 kb on + strandat 1757.872 kb on + strand, within Shewana3_1509at 1758.090 kb on - strand, within Shewana3_1509at 1758.147 kb on + strand, within Shewana3_1509at 1758.178 kb on + strand, within Shewana3_1509at 1758.178 kb on + strand, within Shewana3_1509at 1758.186 kb on - strand, within Shewana3_1509at 1758.435 kb on - strandat 1758.664 kb on - strand, within Shewana3_1510at 1758.764 kb on - strand, within Shewana3_1510at 1758.774 kb on - strand, within Shewana3_1510at 1758.969 kb on + strand, within Shewana3_1510at 1759.054 kb on - strand, within Shewana3_1510at 1759.301 kb on - strand, within Shewana3_1510at 1759.440 kb on + strand, within Shewana3_1510at 1759.502 kb on + strand, within Shewana3_1510at 1759.510 kb on - strand, within Shewana3_1510at 1759.691 kb on - strand, within Shewana3_1510at 1760.226 kb on + strandat 1760.392 kb on - strandat 1760.643 kb on - strand, within Shewana3_1511at 1760.835 kb on + strandat 1760.869 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
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1,757,490 - Shewana3_1508 0.83 -0.5
1,757,699 - -0.8
1,757,816 + -0.4
1,757,872 + Shewana3_1509 0.10 -2.4
1,758,090 - Shewana3_1509 0.43 +0.2
1,758,147 + Shewana3_1509 0.51 -1.1
1,758,178 + Shewana3_1509 0.56 +0.1
1,758,178 + Shewana3_1509 0.56 -2.9
1,758,186 - Shewana3_1509 0.57 +0.6
1,758,435 - -0.0
1,758,664 - Shewana3_1510 0.13 +0.7
1,758,764 - Shewana3_1510 0.20 +0.9
1,758,774 - Shewana3_1510 0.20 +0.2
1,758,969 + Shewana3_1510 0.33 +0.7
1,759,054 - Shewana3_1510 0.39 +0.8
1,759,301 - Shewana3_1510 0.56 +0.2
1,759,440 + Shewana3_1510 0.65 -0.2
1,759,502 + Shewana3_1510 0.69 -0.2
1,759,510 - Shewana3_1510 0.70 +0.6
1,759,691 - Shewana3_1510 0.82 -0.0
1,760,226 + +0.0
1,760,392 - +0.6
1,760,643 - Shewana3_1511 0.37 +1.3
1,760,835 + -0.2
1,760,869 - -0.2

Or see this region's nucleotide sequence