Experiment: Inosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt flhF and Shewana3_1358 are separated by 4 nucleotides Shewana3_1358 and fliA overlap by 8 nucleotides fliA and Shewana3_1360 are separated by 47 nucleotides
Shewana3_1357: flhF - flagellar biosynthesis regulator FlhF (RefSeq), at 1,569,969 to 1,571,345
flhF
Shewana3_1358: Shewana3_1358 - cobyrinic acid a,c-diamide synthase (RefSeq), at 1,571,350 to 1,572,231
_1358
Shewana3_1359: fliA - flagellar biosynthesis sigma factor (RefSeq), at 1,572,224 to 1,572,937
fliA
Shewana3_1360: Shewana3_1360 - response regulator receiver protein (RefSeq), at 1,572,985 to 1,573,368
_1360
Position (kb)
1571
1572
1573 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1570.690 kb on + strand, within flhF at 1570.767 kb on + strand, within flhF at 1570.878 kb on + strand, within flhF at 1571.047 kb on + strand, within flhF at 1571.052 kb on + strand, within flhF at 1571.110 kb on + strand, within flhF at 1571.587 kb on + strand, within Shewana3_1358 at 1571.602 kb on + strand, within Shewana3_1358 at 1571.812 kb on + strand, within Shewana3_1358 at 1572.075 kb on + strand, within Shewana3_1358 at 1572.239 kb on + strand at 1572.288 kb on - strand at 1572.376 kb on + strand, within fliA at 1572.524 kb on + strand, within fliA at 1572.806 kb on + strand, within fliA at 1572.907 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Inosine (C) remove 1,570,690 + flhF Shewana3_1357 0.52 +0.6 1,570,767 + flhF Shewana3_1357 0.58 -0.3 1,570,878 + flhF Shewana3_1357 0.66 +0.6 1,571,047 + flhF Shewana3_1357 0.78 +0.7 1,571,052 + flhF Shewana3_1357 0.79 -0.4 1,571,110 + flhF Shewana3_1357 0.83 -0.6 1,571,587 + Shewana3_1358 0.27 -1.6 1,571,602 + Shewana3_1358 0.29 -1.5 1,571,812 + Shewana3_1358 0.52 -2.8 1,572,075 + Shewana3_1358 0.82 -1.5 1,572,239 + +0.4 1,572,288 - +0.7 1,572,376 + fliA Shewana3_1359 0.21 -0.4 1,572,524 + fliA Shewana3_1359 0.42 +0.2 1,572,806 + fliA Shewana3_1359 0.82 -0.7 1,572,907 + -0.8
Or see this region's nucleotide sequence