Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0173

Experiment: Inosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0171 and Shewana3_0172 are separated by 230 nucleotidesShewana3_0172 and Shewana3_0173 overlap by 10 nucleotidesShewana3_0173 and Shewana3_0174 are separated by 67 nucleotides Shewana3_0171: Shewana3_0171 - GCN5-related N-acetyltransferase (RefSeq), at 203,943 to 204,386 _0171 Shewana3_0172: Shewana3_0172 - TetR family transcriptional regulator (RefSeq), at 204,617 to 205,228 _0172 Shewana3_0173: Shewana3_0173 - phospholipid/glycerol acyltransferase (RefSeq), at 205,219 to 207,084 _0173 Shewana3_0174: Shewana3_0174 - hypothetical protein (RefSeq), at 207,152 to 208,465 _0174 Position (kb) 205 206 207 208Strain fitness (log2 ratio) -2 -1 0 1 2at 204.220 kb on + strand, within Shewana3_0171at 204.449 kb on - strandat 204.491 kb on - strandat 204.602 kb on - strandat 204.604 kb on - strandat 204.607 kb on + strandat 204.657 kb on - strandat 204.661 kb on + strandat 204.707 kb on - strand, within Shewana3_0172at 204.707 kb on - strand, within Shewana3_0172at 204.957 kb on + strand, within Shewana3_0172at 205.100 kb on - strand, within Shewana3_0172at 205.607 kb on - strand, within Shewana3_0173at 205.764 kb on + strand, within Shewana3_0173at 205.813 kb on - strand, within Shewana3_0173at 205.853 kb on + strand, within Shewana3_0173at 205.861 kb on - strand, within Shewana3_0173at 205.861 kb on - strand, within Shewana3_0173at 205.861 kb on - strand, within Shewana3_0173at 206.087 kb on + strand, within Shewana3_0173at 206.095 kb on - strand, within Shewana3_0173at 206.100 kb on + strand, within Shewana3_0173at 206.102 kb on + strand, within Shewana3_0173at 206.163 kb on + strand, within Shewana3_0173at 206.183 kb on + strand, within Shewana3_0173at 206.248 kb on + strand, within Shewana3_0173at 206.405 kb on + strand, within Shewana3_0173at 206.476 kb on + strand, within Shewana3_0173at 206.595 kb on - strand, within Shewana3_0173at 206.623 kb on + strand, within Shewana3_0173at 206.902 kb on + strandat 206.995 kb on + strandat 207.013 kb on + strandat 207.063 kb on - strandat 207.198 kb on + strandat 207.295 kb on + strand, within Shewana3_0174at 207.321 kb on + strand, within Shewana3_0174at 207.329 kb on - strand, within Shewana3_0174at 207.380 kb on + strand, within Shewana3_0174at 207.400 kb on + strand, within Shewana3_0174at 207.400 kb on + strand, within Shewana3_0174at 207.408 kb on - strand, within Shewana3_0174at 207.437 kb on + strand, within Shewana3_0174at 207.445 kb on - strand, within Shewana3_0174at 207.445 kb on - strand, within Shewana3_0174at 207.445 kb on - strand, within Shewana3_0174at 207.445 kb on - strand, within Shewana3_0174at 207.445 kb on - strand, within Shewana3_0174at 207.472 kb on + strand, within Shewana3_0174at 207.482 kb on + strand, within Shewana3_0174at 207.490 kb on - strand, within Shewana3_0174at 207.611 kb on + strand, within Shewana3_0174at 207.614 kb on - strand, within Shewana3_0174at 207.626 kb on + strand, within Shewana3_0174at 207.631 kb on + strand, within Shewana3_0174at 207.639 kb on - strand, within Shewana3_0174at 207.656 kb on - strand, within Shewana3_0174at 207.667 kb on + strand, within Shewana3_0174at 207.667 kb on + strand, within Shewana3_0174at 207.667 kb on + strand, within Shewana3_0174at 207.667 kb on + strand, within Shewana3_0174at 207.667 kb on + strand, within Shewana3_0174at 207.675 kb on - strand, within Shewana3_0174at 207.675 kb on - strand, within Shewana3_0174at 207.675 kb on - strand, within Shewana3_0174at 207.675 kb on - strand, within Shewana3_0174at 207.721 kb on + strand, within Shewana3_0174at 207.721 kb on + strand, within Shewana3_0174at 207.721 kb on + strand, within Shewana3_0174at 207.721 kb on + strand, within Shewana3_0174at 207.721 kb on + strand, within Shewana3_0174at 207.721 kb on + strand, within Shewana3_0174at 207.721 kb on + strand, within Shewana3_0174at 207.729 kb on - strand, within Shewana3_0174at 207.729 kb on - strand, within Shewana3_0174at 207.729 kb on - strand, within Shewana3_0174at 207.729 kb on - strand, within Shewana3_0174at 207.729 kb on - strand, within Shewana3_0174at 207.729 kb on - strand, within Shewana3_0174at 207.729 kb on - strand, within Shewana3_0174at 207.729 kb on - strand, within Shewana3_0174at 207.729 kb on - strand, within Shewana3_0174at 207.729 kb on - strand, within Shewana3_0174at 207.731 kb on - strand, within Shewana3_0174at 207.747 kb on + strand, within Shewana3_0174at 207.747 kb on + strand, within Shewana3_0174at 207.761 kb on - strand, within Shewana3_0174at 207.788 kb on + strand, within Shewana3_0174at 207.802 kb on + strand, within Shewana3_0174at 207.802 kb on + strand, within Shewana3_0174at 207.809 kb on + strand, within Shewana3_0174at 207.819 kb on - strand, within Shewana3_0174at 207.820 kb on + strand, within Shewana3_0174at 207.823 kb on + strand, within Shewana3_0174at 207.823 kb on + strand, within Shewana3_0174at 207.823 kb on + strand, within Shewana3_0174at 207.832 kb on + strand, within Shewana3_0174at 207.837 kb on + strand, within Shewana3_0174at 207.837 kb on + strand, within Shewana3_0174at 207.837 kb on + strand, within Shewana3_0174at 207.837 kb on + strand, within Shewana3_0174at 207.837 kb on + strand, within Shewana3_0174at 207.837 kb on + strand, within Shewana3_0174at 207.845 kb on - strand, within Shewana3_0174at 207.845 kb on - strand, within Shewana3_0174at 207.845 kb on - strand, within Shewana3_0174at 207.845 kb on - strand, within Shewana3_0174at 207.845 kb on - strand, within Shewana3_0174at 207.855 kb on - strand, within Shewana3_0174at 207.937 kb on - strand, within Shewana3_0174at 207.947 kb on - strand, within Shewana3_0174at 207.991 kb on + strand, within Shewana3_0174at 208.034 kb on - strand, within Shewana3_0174

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
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204,220 + Shewana3_0171 0.62 +0.3
204,449 - -1.0
204,491 - -0.5
204,602 - +0.3
204,604 - -0.6
204,607 + +1.1
204,657 - +0.8
204,661 + +0.4
204,707 - Shewana3_0172 0.15 -0.3
204,707 - Shewana3_0172 0.15 -0.7
204,957 + Shewana3_0172 0.56 -0.3
205,100 - Shewana3_0172 0.79 -0.1
205,607 - Shewana3_0173 0.21 -0.4
205,764 + Shewana3_0173 0.29 +0.1
205,813 - Shewana3_0173 0.32 -1.1
205,853 + Shewana3_0173 0.34 -1.1
205,861 - Shewana3_0173 0.34 +0.2
205,861 - Shewana3_0173 0.34 +0.8
205,861 - Shewana3_0173 0.34 +0.4
206,087 + Shewana3_0173 0.47 -0.5
206,095 - Shewana3_0173 0.47 +0.3
206,100 + Shewana3_0173 0.47 -0.7
206,102 + Shewana3_0173 0.47 -1.2
206,163 + Shewana3_0173 0.51 -0.4
206,183 + Shewana3_0173 0.52 -1.7
206,248 + Shewana3_0173 0.55 -2.0
206,405 + Shewana3_0173 0.64 +0.2
206,476 + Shewana3_0173 0.67 +0.5
206,595 - Shewana3_0173 0.74 -1.3
206,623 + Shewana3_0173 0.75 +0.5
206,902 + +0.1
206,995 + +0.9
207,013 + -1.7
207,063 - +0.2
207,198 + +0.3
207,295 + Shewana3_0174 0.11 +0.3
207,321 + Shewana3_0174 0.13 -0.7
207,329 - Shewana3_0174 0.13 +0.5
207,380 + Shewana3_0174 0.17 +0.7
207,400 + Shewana3_0174 0.19 -1.2
207,400 + Shewana3_0174 0.19 +0.1
207,408 - Shewana3_0174 0.19 -0.0
207,437 + Shewana3_0174 0.22 -0.9
207,445 - Shewana3_0174 0.22 +0.4
207,445 - Shewana3_0174 0.22 +0.7
207,445 - Shewana3_0174 0.22 -1.8
207,445 - Shewana3_0174 0.22 -0.4
207,445 - Shewana3_0174 0.22 +0.5
207,472 + Shewana3_0174 0.24 -0.8
207,482 + Shewana3_0174 0.25 +0.2
207,490 - Shewana3_0174 0.26 -1.3
207,611 + Shewana3_0174 0.35 -0.9
207,614 - Shewana3_0174 0.35 -0.7
207,626 + Shewana3_0174 0.36 -0.9
207,631 + Shewana3_0174 0.36 +1.0
207,639 - Shewana3_0174 0.37 +0.5
207,656 - Shewana3_0174 0.38 +0.4
207,667 + Shewana3_0174 0.39 +0.6
207,667 + Shewana3_0174 0.39 +0.5
207,667 + Shewana3_0174 0.39 -0.2
207,667 + Shewana3_0174 0.39 -0.4
207,667 + Shewana3_0174 0.39 +0.1
207,675 - Shewana3_0174 0.40 -0.6
207,675 - Shewana3_0174 0.40 +1.0
207,675 - Shewana3_0174 0.40 +0.7
207,675 - Shewana3_0174 0.40 -0.6
207,721 + Shewana3_0174 0.43 +0.4
207,721 + Shewana3_0174 0.43 -0.1
207,721 + Shewana3_0174 0.43 -0.3
207,721 + Shewana3_0174 0.43 +0.8
207,721 + Shewana3_0174 0.43 +0.2
207,721 + Shewana3_0174 0.43 -1.0
207,721 + Shewana3_0174 0.43 +0.5
207,729 - Shewana3_0174 0.44 -0.7
207,729 - Shewana3_0174 0.44 -0.7
207,729 - Shewana3_0174 0.44 +0.5
207,729 - Shewana3_0174 0.44 -0.0
207,729 - Shewana3_0174 0.44 +0.7
207,729 - Shewana3_0174 0.44 -1.8
207,729 - Shewana3_0174 0.44 -0.1
207,729 - Shewana3_0174 0.44 +0.6
207,729 - Shewana3_0174 0.44 +0.6
207,729 - Shewana3_0174 0.44 +0.3
207,731 - Shewana3_0174 0.44 -1.0
207,747 + Shewana3_0174 0.45 -0.2
207,747 + Shewana3_0174 0.45 +0.0
207,761 - Shewana3_0174 0.46 -0.0
207,788 + Shewana3_0174 0.48 -2.3
207,802 + Shewana3_0174 0.49 -0.5
207,802 + Shewana3_0174 0.49 -0.3
207,809 + Shewana3_0174 0.50 -0.1
207,819 - Shewana3_0174 0.51 +0.8
207,820 + Shewana3_0174 0.51 +0.4
207,823 + Shewana3_0174 0.51 +0.0
207,823 + Shewana3_0174 0.51 +0.1
207,823 + Shewana3_0174 0.51 +0.2
207,832 + Shewana3_0174 0.52 -1.8
207,837 + Shewana3_0174 0.52 -2.2
207,837 + Shewana3_0174 0.52 -1.3
207,837 + Shewana3_0174 0.52 +0.3
207,837 + Shewana3_0174 0.52 +0.6
207,837 + Shewana3_0174 0.52 +0.6
207,837 + Shewana3_0174 0.52 -0.5
207,845 - Shewana3_0174 0.53 -0.6
207,845 - Shewana3_0174 0.53 +0.8
207,845 - Shewana3_0174 0.53 +0.5
207,845 - Shewana3_0174 0.53 +1.8
207,845 - Shewana3_0174 0.53 +0.4
207,855 - Shewana3_0174 0.54 -0.8
207,937 - Shewana3_0174 0.60 -0.3
207,947 - Shewana3_0174 0.61 +1.0
207,991 + Shewana3_0174 0.64 +0.4
208,034 - Shewana3_0174 0.67 -1.0

Or see this region's nucleotide sequence