Experiment: Inosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0079 and Shewana3_0080 are separated by 128 nucleotides Shewana3_0080 and Shewana3_0081 are separated by 140 nucleotides
Shewana3_0079: Shewana3_0079 - hypothetical protein (RefSeq), at 91,041 to 92,351
_0079
Shewana3_0080: Shewana3_0080 - AMP-dependent synthetase and ligase (RefSeq), at 92,480 to 94,273
_0080
Shewana3_0081: Shewana3_0081 - MORN repeat-containing protein (RefSeq), at 94,414 to 96,903
_0081
Position (kb) 92
93
94
95 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 91.522 kb on - strand, within Shewana3_0079 at 91.578 kb on - strand, within Shewana3_0079 at 91.620 kb on + strand, within Shewana3_0079 at 91.620 kb on + strand, within Shewana3_0079 at 91.759 kb on + strand, within Shewana3_0079 at 91.759 kb on + strand, within Shewana3_0079 at 91.759 kb on + strand, within Shewana3_0079 at 91.767 kb on - strand, within Shewana3_0079 at 91.767 kb on - strand, within Shewana3_0079 at 91.927 kb on + strand, within Shewana3_0079 at 92.028 kb on + strand, within Shewana3_0079 at 92.028 kb on + strand, within Shewana3_0079 at 92.133 kb on + strand, within Shewana3_0079 at 92.135 kb on - strand, within Shewana3_0079 at 92.141 kb on - strand, within Shewana3_0079 at 92.160 kb on - strand, within Shewana3_0079 at 92.423 kb on + strand at 92.423 kb on + strand at 92.469 kb on - strand at 92.542 kb on + strand at 92.665 kb on - strand, within Shewana3_0080 at 92.691 kb on + strand, within Shewana3_0080 at 92.696 kb on + strand, within Shewana3_0080 at 92.766 kb on + strand, within Shewana3_0080 at 92.826 kb on + strand, within Shewana3_0080 at 92.855 kb on - strand, within Shewana3_0080 at 92.904 kb on + strand, within Shewana3_0080 at 92.912 kb on - strand, within Shewana3_0080 at 92.976 kb on + strand, within Shewana3_0080 at 92.990 kb on - strand, within Shewana3_0080 at 93.091 kb on + strand, within Shewana3_0080 at 93.176 kb on - strand, within Shewana3_0080 at 93.185 kb on + strand, within Shewana3_0080 at 93.208 kb on - strand, within Shewana3_0080 at 93.240 kb on + strand, within Shewana3_0080 at 93.276 kb on + strand, within Shewana3_0080 at 93.276 kb on + strand, within Shewana3_0080 at 93.284 kb on - strand, within Shewana3_0080 at 93.326 kb on + strand, within Shewana3_0080 at 93.326 kb on + strand, within Shewana3_0080 at 93.326 kb on + strand, within Shewana3_0080 at 93.331 kb on + strand, within Shewana3_0080 at 93.334 kb on - strand, within Shewana3_0080 at 93.769 kb on + strand, within Shewana3_0080 at 93.973 kb on + strand, within Shewana3_0080 at 94.027 kb on + strand, within Shewana3_0080 at 94.110 kb on + strand at 94.123 kb on - strand at 94.157 kb on - strand at 94.171 kb on - strand at 94.391 kb on + strand at 94.398 kb on - strand at 94.459 kb on - strand at 94.464 kb on - strand at 94.682 kb on + strand, within Shewana3_0081 at 94.682 kb on + strand, within Shewana3_0081 at 94.700 kb on - strand, within Shewana3_0081 at 94.741 kb on + strand, within Shewana3_0081 at 94.817 kb on + strand, within Shewana3_0081 at 94.851 kb on - strand, within Shewana3_0081 at 94.887 kb on + strand, within Shewana3_0081 at 95.047 kb on - strand, within Shewana3_0081 at 95.095 kb on - strand, within Shewana3_0081 at 95.113 kb on + strand, within Shewana3_0081 at 95.166 kb on - strand, within Shewana3_0081 at 95.234 kb on + strand, within Shewana3_0081 at 95.237 kb on - strand, within Shewana3_0081
Per-strain Table
Position Strand Gene LocusTag Fraction Inosine (C) remove 91,522 - Shewana3_0079 0.37 +0.3 91,578 - Shewana3_0079 0.41 +1.8 91,620 + Shewana3_0079 0.44 +0.3 91,620 + Shewana3_0079 0.44 -0.9 91,759 + Shewana3_0079 0.55 +0.8 91,759 + Shewana3_0079 0.55 +0.7 91,759 + Shewana3_0079 0.55 +0.3 91,767 - Shewana3_0079 0.55 -0.9 91,767 - Shewana3_0079 0.55 +0.1 91,927 + Shewana3_0079 0.68 +0.7 92,028 + Shewana3_0079 0.75 +0.0 92,028 + Shewana3_0079 0.75 +0.6 92,133 + Shewana3_0079 0.83 -1.3 92,135 - Shewana3_0079 0.83 +0.7 92,141 - Shewana3_0079 0.84 -0.2 92,160 - Shewana3_0079 0.85 -0.2 92,423 + -1.1 92,423 + +0.4 92,469 - -1.4 92,542 + +0.4 92,665 - Shewana3_0080 0.10 +0.0 92,691 + Shewana3_0080 0.12 +0.3 92,696 + Shewana3_0080 0.12 +0.2 92,766 + Shewana3_0080 0.16 +0.3 92,826 + Shewana3_0080 0.19 +0.4 92,855 - Shewana3_0080 0.21 +0.7 92,904 + Shewana3_0080 0.24 -0.1 92,912 - Shewana3_0080 0.24 +0.4 92,976 + Shewana3_0080 0.28 -0.2 92,990 - Shewana3_0080 0.28 -0.5 93,091 + Shewana3_0080 0.34 +0.4 93,176 - Shewana3_0080 0.39 -1.0 93,185 + Shewana3_0080 0.39 -0.4 93,208 - Shewana3_0080 0.41 +0.3 93,240 + Shewana3_0080 0.42 -0.0 93,276 + Shewana3_0080 0.44 -1.2 93,276 + Shewana3_0080 0.44 -1.7 93,284 - Shewana3_0080 0.45 +0.2 93,326 + Shewana3_0080 0.47 +0.4 93,326 + Shewana3_0080 0.47 -0.4 93,326 + Shewana3_0080 0.47 +0.1 93,331 + Shewana3_0080 0.47 -0.3 93,334 - Shewana3_0080 0.48 -0.5 93,769 + Shewana3_0080 0.72 -1.7 93,973 + Shewana3_0080 0.83 +0.4 94,027 + Shewana3_0080 0.86 +0.1 94,110 + -1.6 94,123 - +0.5 94,157 - +0.5 94,171 - +0.3 94,391 + +0.1 94,398 - -0.6 94,459 - -0.4 94,464 - +0.7 94,682 + Shewana3_0081 0.11 -3.2 94,682 + Shewana3_0081 0.11 -1.1 94,700 - Shewana3_0081 0.11 +0.5 94,741 + Shewana3_0081 0.13 +0.3 94,817 + Shewana3_0081 0.16 -0.6 94,851 - Shewana3_0081 0.18 -1.0 94,887 + Shewana3_0081 0.19 -0.8 95,047 - Shewana3_0081 0.25 -0.4 95,095 - Shewana3_0081 0.27 -1.1 95,113 + Shewana3_0081 0.28 -0.9 95,166 - Shewana3_0081 0.30 -1.2 95,234 + Shewana3_0081 0.33 -0.8 95,237 - Shewana3_0081 0.33 +0.7
Or see this region's nucleotide sequence