Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0535 and BT0536 are separated by 172 nucleotides BT0536 and BT0537 overlap by 4 nucleotides BT0537 and BT0538 overlap by 11 nucleotides BT0538 and BT0539 are separated by 170 nucleotides
BT0535: BT0535 - iron-containing alcohol dehydrogenase (NCBI ptt file), at 658,163 to 659,308
BT0535
BT0536: BT0536 - two-component system sensor protein (NCBI ptt file), at 659,481 to 660,041
BT0536
BT0537: BT0537 - conserved hypothetical protein (NCBI ptt file), at 660,038 to 661,102
BT0537
BT0538: BT0538 - hypothetical protein (NCBI ptt file), at 661,092 to 661,277
BT0538
BT0539: BT0539 - putative Na+/sulphate transporter (NCBI ptt file), at 661,448 to 663,307
BT0539
Position (kb) 660
661
662 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 659.066 kb on + strand, within BT0535 at 659.134 kb on + strand, within BT0535 at 659.246 kb on + strand at 659.247 kb on - strand at 659.289 kb on + strand at 659.289 kb on + strand at 659.352 kb on + strand at 659.394 kb on - strand at 659.394 kb on - strand at 659.396 kb on + strand at 659.397 kb on - strand at 659.404 kb on - strand at 659.407 kb on - strand at 659.453 kb on - strand at 659.459 kb on + strand at 659.460 kb on - strand at 659.544 kb on - strand, within BT0536 at 659.702 kb on - strand, within BT0536 at 659.702 kb on - strand, within BT0536 at 659.997 kb on + strand at 659.998 kb on - strand at 660.033 kb on + strand at 660.033 kb on + strand at 660.120 kb on - strand at 660.323 kb on - strand, within BT0537 at 660.325 kb on + strand, within BT0537 at 660.427 kb on + strand, within BT0537 at 660.428 kb on - strand, within BT0537 at 660.429 kb on + strand, within BT0537 at 660.479 kb on + strand, within BT0537 at 660.501 kb on + strand, within BT0537 at 660.524 kb on + strand, within BT0537 at 660.533 kb on + strand, within BT0537 at 660.671 kb on + strand, within BT0537 at 660.732 kb on - strand, within BT0537 at 660.796 kb on - strand, within BT0537 at 660.818 kb on + strand, within BT0537 at 660.871 kb on - strand, within BT0537 at 660.874 kb on - strand, within BT0537 at 660.902 kb on + strand, within BT0537 at 660.925 kb on + strand, within BT0537 at 661.000 kb on - strand at 661.069 kb on + strand at 661.090 kb on + strand at 661.091 kb on - strand at 661.414 kb on + strand at 661.448 kb on - strand at 661.502 kb on - strand at 661.528 kb on - strand at 661.560 kb on + strand at 661.564 kb on - strand at 661.643 kb on - strand, within BT0539 at 661.672 kb on - strand, within BT0539 at 661.687 kb on + strand, within BT0539 at 661.729 kb on + strand, within BT0539 at 661.729 kb on + strand, within BT0539 at 661.730 kb on - strand, within BT0539 at 661.730 kb on - strand, within BT0539 at 661.870 kb on + strand, within BT0539 at 662.027 kb on - strand, within BT0539 at 662.063 kb on - strand, within BT0539 at 662.063 kb on - strand, within BT0539 at 662.086 kb on - strand, within BT0539
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 659,066 + BT0535 0.79 -1.7 659,134 + BT0535 0.85 -1.4 659,246 + +0.9 659,247 - -0.3 659,289 + -2.9 659,289 + -2.9 659,352 + -1.4 659,394 - +1.5 659,394 - +0.8 659,396 + +0.3 659,397 - +1.0 659,404 - +2.3 659,407 - -1.9 659,453 - -0.7 659,459 + -2.0 659,460 - +0.1 659,544 - BT0536 0.11 +0.3 659,702 - BT0536 0.39 +1.3 659,702 - BT0536 0.39 +0.9 659,997 + -1.5 659,998 - -2.8 660,033 + +0.5 660,033 + -2.6 660,120 - -0.3 660,323 - BT0537 0.27 -0.9 660,325 + BT0537 0.27 -2.0 660,427 + BT0537 0.37 +0.6 660,428 - BT0537 0.37 -2.2 660,429 + BT0537 0.37 +1.0 660,479 + BT0537 0.41 -0.4 660,501 + BT0537 0.43 -0.4 660,524 + BT0537 0.46 -2.6 660,533 + BT0537 0.46 +0.9 660,671 + BT0537 0.59 +1.4 660,732 - BT0537 0.65 -1.2 660,796 - BT0537 0.71 +0.5 660,818 + BT0537 0.73 -2.3 660,871 - BT0537 0.78 -0.5 660,874 - BT0537 0.78 -1.0 660,902 + BT0537 0.81 +1.1 660,925 + BT0537 0.83 +1.1 661,000 - -3.3 661,069 + -1.5 661,090 + -0.8 661,091 - +0.6 661,414 + +0.3 661,448 - +0.4 661,502 - -1.4 661,528 - -2.1 661,560 + -1.4 661,564 - -0.4 661,643 - BT0539 0.10 -1.0 661,672 - BT0539 0.12 -1.0 661,687 + BT0539 0.13 -0.9 661,729 + BT0539 0.15 -4.0 661,729 + BT0539 0.15 -1.0 661,730 - BT0539 0.15 -0.7 661,730 - BT0539 0.15 -2.0 661,870 + BT0539 0.23 +0.3 662,027 - BT0539 0.31 +0.7 662,063 - BT0539 0.33 -1.9 662,063 - BT0539 0.33 -0.8 662,086 - BT0539 0.34 +0.5
Or see this region's nucleotide sequence