Experiment: Light Dark first sampling rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sun and Synpcc7942_0963 overlap by 65 nucleotides Synpcc7942_0963 and Synpcc7942_0964 are separated by 216 nucleotides Synpcc7942_0964 and amt1 are separated by 13 nucleotides
Synpcc7942_0962: sun - sun protein, at 969,968 to 971,323
sun
Synpcc7942_0963: Synpcc7942_0963 - probable methyltransferase, at 971,259 to 971,639
_0963
Synpcc7942_0964: Synpcc7942_0964 - hypothetical protein, at 971,856 to 972,374
_0964
Synpcc7942_0965: amt1 - ammonium transporter protein Amt1-like, at 972,388 to 973,350
amt1
Position (kb) 971
972 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 970.266 kb on + strand, within sun at 970.295 kb on + strand, within sun at 970.295 kb on + strand, within sun at 970.304 kb on - strand, within sun at 970.307 kb on + strand, within sun at 970.307 kb on + strand, within sun at 970.315 kb on - strand, within sun at 970.315 kb on - strand, within sun at 970.315 kb on - strand, within sun at 970.315 kb on - strand, within sun at 970.315 kb on - strand, within sun at 970.315 kb on - strand, within sun at 970.325 kb on - strand, within sun at 970.356 kb on + strand, within sun at 970.356 kb on + strand, within sun at 970.364 kb on - strand, within sun at 970.381 kb on + strand, within sun at 970.381 kb on + strand, within sun at 970.395 kb on - strand, within sun at 970.405 kb on - strand, within sun at 970.428 kb on + strand, within sun at 970.429 kb on - strand, within sun at 970.436 kb on - strand, within sun at 970.484 kb on - strand, within sun at 970.540 kb on - strand, within sun at 970.587 kb on + strand, within sun at 970.592 kb on + strand, within sun at 970.592 kb on + strand, within sun at 970.618 kb on - strand, within sun at 970.622 kb on + strand, within sun at 970.651 kb on + strand, within sun at 970.669 kb on - strand, within sun at 970.676 kb on - strand, within sun at 970.686 kb on - strand, within sun at 970.721 kb on + strand, within sun at 970.730 kb on - strand, within sun at 970.743 kb on + strand, within sun at 970.751 kb on - strand, within sun at 970.751 kb on - strand, within sun at 970.751 kb on - strand at 970.773 kb on - strand, within sun at 970.773 kb on - strand, within sun at 970.814 kb on + strand, within sun at 970.814 kb on + strand, within sun at 970.833 kb on + strand, within sun at 970.833 kb on + strand, within sun at 970.838 kb on + strand, within sun at 970.841 kb on - strand, within sun at 970.841 kb on - strand, within sun at 970.841 kb on - strand, within sun at 970.841 kb on - strand, within sun at 970.841 kb on - strand, within sun at 970.851 kb on - strand, within sun at 970.862 kb on + strand, within sun at 970.967 kb on + strand, within sun at 970.970 kb on - strand, within sun at 970.977 kb on + strand, within sun at 970.980 kb on + strand, within sun at 971.007 kb on + strand, within sun at 971.048 kb on + strand, within sun at 971.051 kb on - strand, within sun at 971.077 kb on - strand, within sun at 971.077 kb on - strand, within sun at 971.077 kb on - strand, within sun at 971.077 kb on - strand, within sun at 971.077 kb on - strand, within sun at 971.077 kb on - strand, within sun at 971.077 kb on - strand, within sun at 971.077 kb on - strand, within sun at 971.087 kb on - strand, within sun at 971.087 kb on - strand, within sun at 971.111 kb on - strand, within sun at 971.117 kb on - strand, within sun at 971.173 kb on - strand, within sun at 971.173 kb on - strand, within sun at 971.173 kb on - strand, within sun at 971.181 kb on - strand, within sun at 971.199 kb on + strand at 971.204 kb on + strand at 971.204 kb on + strand at 971.204 kb on + strand at 971.204 kb on + strand at 971.207 kb on - strand at 971.277 kb on - strand at 971.289 kb on + strand at 971.345 kb on + strand, within Synpcc7942_0963 at 971.346 kb on - strand, within Synpcc7942_0963 at 971.392 kb on - strand at 971.435 kb on - strand, within Synpcc7942_0963 at 971.439 kb on + strand, within Synpcc7942_0963 at 971.443 kb on - strand at 971.447 kb on - strand, within Synpcc7942_0963 at 971.447 kb on - strand, within Synpcc7942_0963 at 971.466 kb on - strand, within Synpcc7942_0963 at 971.485 kb on + strand, within Synpcc7942_0963 at 971.495 kb on + strand, within Synpcc7942_0963 at 971.495 kb on + strand, within Synpcc7942_0963 at 971.495 kb on + strand, within Synpcc7942_0963 at 971.503 kb on - strand, within Synpcc7942_0963 at 971.503 kb on - strand at 971.504 kb on + strand, within Synpcc7942_0963 at 971.514 kb on - strand, within Synpcc7942_0963 at 971.514 kb on - strand, within Synpcc7942_0963 at 971.523 kb on + strand, within Synpcc7942_0963 at 971.547 kb on - strand, within Synpcc7942_0963 at 971.548 kb on + strand, within Synpcc7942_0963 at 971.569 kb on + strand, within Synpcc7942_0963 at 971.592 kb on - strand, within Synpcc7942_0963 at 971.592 kb on - strand, within Synpcc7942_0963 at 971.614 kb on + strand at 971.647 kb on - strand at 971.647 kb on - strand at 971.702 kb on - strand at 971.702 kb on - strand at 971.707 kb on - strand at 971.721 kb on + strand at 971.721 kb on + strand at 971.729 kb on - strand at 971.762 kb on + strand at 971.770 kb on - strand at 971.808 kb on + strand at 971.811 kb on - strand at 971.848 kb on - strand at 971.855 kb on + strand at 971.907 kb on - strand at 971.907 kb on - strand at 971.907 kb on - strand at 971.929 kb on - strand, within Synpcc7942_0964 at 971.945 kb on + strand, within Synpcc7942_0964 at 971.957 kb on + strand, within Synpcc7942_0964 at 971.979 kb on + strand, within Synpcc7942_0964 at 972.002 kb on + strand, within Synpcc7942_0964 at 972.009 kb on + strand, within Synpcc7942_0964 at 972.014 kb on + strand, within Synpcc7942_0964 at 972.014 kb on + strand, within Synpcc7942_0964 at 972.014 kb on + strand, within Synpcc7942_0964 at 972.014 kb on + strand, within Synpcc7942_0964 at 972.014 kb on + strand, within Synpcc7942_0964 at 972.014 kb on - strand, within Synpcc7942_0964 at 972.022 kb on - strand, within Synpcc7942_0964 at 972.022 kb on - strand, within Synpcc7942_0964 at 972.031 kb on + strand, within Synpcc7942_0964 at 972.031 kb on + strand, within Synpcc7942_0964 at 972.039 kb on - strand, within Synpcc7942_0964 at 972.048 kb on + strand, within Synpcc7942_0964 at 972.056 kb on - strand, within Synpcc7942_0964 at 972.056 kb on - strand, within Synpcc7942_0964 at 972.089 kb on + strand, within Synpcc7942_0964 at 972.089 kb on + strand, within Synpcc7942_0964 at 972.089 kb on + strand, within Synpcc7942_0964 at 972.095 kb on + strand, within Synpcc7942_0964 at 972.097 kb on - strand, within Synpcc7942_0964 at 972.097 kb on - strand, within Synpcc7942_0964 at 972.097 kb on - strand, within Synpcc7942_0964 at 972.098 kb on - strand, within Synpcc7942_0964 at 972.103 kb on - strand, within Synpcc7942_0964 at 972.105 kb on + strand, within Synpcc7942_0964 at 972.132 kb on + strand, within Synpcc7942_0964 at 972.134 kb on + strand, within Synpcc7942_0964 at 972.148 kb on - strand, within Synpcc7942_0964 at 972.159 kb on + strand, within Synpcc7942_0964 at 972.159 kb on + strand, within Synpcc7942_0964 at 972.159 kb on + strand, within Synpcc7942_0964 at 972.167 kb on - strand, within Synpcc7942_0964 at 972.172 kb on + strand, within Synpcc7942_0964 at 972.172 kb on + strand, within Synpcc7942_0964 at 972.172 kb on + strand, within Synpcc7942_0964 at 972.180 kb on - strand, within Synpcc7942_0964 at 972.180 kb on - strand, within Synpcc7942_0964 at 972.217 kb on + strand, within Synpcc7942_0964 at 972.241 kb on + strand, within Synpcc7942_0964 at 972.265 kb on - strand, within Synpcc7942_0964 at 972.318 kb on + strand, within Synpcc7942_0964 at 972.325 kb on - strand at 972.325 kb on - strand at 972.374 kb on + strand at 972.376 kb on - strand at 972.376 kb on - strand at 972.380 kb on + strand at 972.385 kb on + strand at 972.392 kb on - strand at 972.407 kb on + strand at 972.407 kb on + strand at 972.407 kb on + strand at 972.407 kb on + strand at 972.415 kb on - strand at 972.424 kb on + strand at 972.424 kb on + strand at 972.432 kb on - strand at 972.446 kb on + strand at 972.458 kb on + strand at 972.458 kb on + strand at 972.466 kb on - strand at 972.486 kb on - strand, within amt1 at 972.495 kb on + strand, within amt1 at 972.495 kb on + strand, within amt1 at 972.498 kb on - strand, within amt1 at 972.502 kb on + strand, within amt1 at 972.503 kb on - strand, within amt1 at 972.503 kb on - strand, within amt1 at 972.529 kb on - strand, within amt1 at 972.583 kb on + strand, within amt1 at 972.596 kb on + strand, within amt1 at 972.633 kb on + strand, within amt1
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep2 remove 970,266 + sun Synpcc7942_0962 0.22 -0.3 970,295 + sun Synpcc7942_0962 0.24 -1.3 970,295 + sun Synpcc7942_0962 0.24 +0.5 970,304 - sun Synpcc7942_0962 0.25 +0.5 970,307 + sun Synpcc7942_0962 0.25 +0.6 970,307 + sun Synpcc7942_0962 0.25 +1.0 970,315 - sun Synpcc7942_0962 0.26 -0.4 970,315 - sun Synpcc7942_0962 0.26 -3.3 970,315 - sun Synpcc7942_0962 0.26 +0.3 970,315 - sun Synpcc7942_0962 0.26 -0.1 970,315 - sun Synpcc7942_0962 0.26 -0.1 970,315 - sun Synpcc7942_0962 0.26 +0.2 970,325 - sun Synpcc7942_0962 0.26 +0.7 970,356 + sun Synpcc7942_0962 0.29 -0.3 970,356 + sun Synpcc7942_0962 0.29 +0.7 970,364 - sun Synpcc7942_0962 0.29 +0.4 970,381 + sun Synpcc7942_0962 0.30 +1.7 970,381 + sun Synpcc7942_0962 0.30 +0.3 970,395 - sun Synpcc7942_0962 0.31 -0.1 970,405 - sun Synpcc7942_0962 0.32 -1.1 970,428 + sun Synpcc7942_0962 0.34 +0.0 970,429 - sun Synpcc7942_0962 0.34 -1.5 970,436 - sun Synpcc7942_0962 0.35 -0.0 970,484 - sun Synpcc7942_0962 0.38 +0.4 970,540 - sun Synpcc7942_0962 0.42 -0.0 970,587 + sun Synpcc7942_0962 0.46 -0.2 970,592 + sun Synpcc7942_0962 0.46 -0.0 970,592 + sun Synpcc7942_0962 0.46 +0.0 970,618 - sun Synpcc7942_0962 0.48 -0.7 970,622 + sun Synpcc7942_0962 0.48 +0.2 970,651 + sun Synpcc7942_0962 0.50 +0.1 970,669 - sun Synpcc7942_0962 0.52 +0.9 970,676 - sun Synpcc7942_0962 0.52 -1.4 970,686 - sun Synpcc7942_0962 0.53 -0.5 970,721 + sun Synpcc7942_0962 0.56 +0.5 970,730 - sun Synpcc7942_0962 0.56 +0.2 970,743 + sun Synpcc7942_0962 0.57 +0.3 970,751 - sun Synpcc7942_0962 0.58 -0.3 970,751 - sun Synpcc7942_0962 0.58 +1.0 970,751 - +0.1 970,773 - sun Synpcc7942_0962 0.59 +0.8 970,773 - sun Synpcc7942_0962 0.59 -0.1 970,814 + sun Synpcc7942_0962 0.62 +0.5 970,814 + sun Synpcc7942_0962 0.62 -0.2 970,833 + sun Synpcc7942_0962 0.64 +0.4 970,833 + sun Synpcc7942_0962 0.64 +0.3 970,838 + sun Synpcc7942_0962 0.64 -2.0 970,841 - sun Synpcc7942_0962 0.64 +1.0 970,841 - sun Synpcc7942_0962 0.64 -5.6 970,841 - sun Synpcc7942_0962 0.64 +0.7 970,841 - sun Synpcc7942_0962 0.64 -0.1 970,841 - sun Synpcc7942_0962 0.64 +0.1 970,851 - sun Synpcc7942_0962 0.65 +0.4 970,862 + sun Synpcc7942_0962 0.66 +0.6 970,967 + sun Synpcc7942_0962 0.74 +0.5 970,970 - sun Synpcc7942_0962 0.74 -0.5 970,977 + sun Synpcc7942_0962 0.74 +1.0 970,980 + sun Synpcc7942_0962 0.75 +0.4 971,007 + sun Synpcc7942_0962 0.77 +1.7 971,048 + sun Synpcc7942_0962 0.80 -0.2 971,051 - sun Synpcc7942_0962 0.80 +0.3 971,077 - sun Synpcc7942_0962 0.82 -0.3 971,077 - sun Synpcc7942_0962 0.82 +0.1 971,077 - sun Synpcc7942_0962 0.82 -0.5 971,077 - sun Synpcc7942_0962 0.82 -1.9 971,077 - sun Synpcc7942_0962 0.82 +0.4 971,077 - sun Synpcc7942_0962 0.82 -0.1 971,077 - sun Synpcc7942_0962 0.82 +0.1 971,077 - sun Synpcc7942_0962 0.82 +0.1 971,087 - sun Synpcc7942_0962 0.83 +0.1 971,087 - sun Synpcc7942_0962 0.83 -0.4 971,111 - sun Synpcc7942_0962 0.84 -0.0 971,117 - sun Synpcc7942_0962 0.85 -1.3 971,173 - sun Synpcc7942_0962 0.89 +0.3 971,173 - sun Synpcc7942_0962 0.89 +0.7 971,173 - sun Synpcc7942_0962 0.89 +0.7 971,181 - sun Synpcc7942_0962 0.89 -0.0 971,199 + -0.4 971,204 + +0.1 971,204 + +0.3 971,204 + +0.2 971,204 + +0.7 971,207 - +1.1 971,277 - -0.9 971,289 + +0.8 971,345 + Synpcc7942_0963 0.23 +0.3 971,346 - Synpcc7942_0963 0.23 +1.0 971,392 - -0.2 971,435 - Synpcc7942_0963 0.46 +0.0 971,439 + Synpcc7942_0963 0.47 +0.3 971,443 - -0.9 971,447 - Synpcc7942_0963 0.49 -1.3 971,447 - Synpcc7942_0963 0.49 +0.4 971,466 - Synpcc7942_0963 0.54 +0.4 971,485 + Synpcc7942_0963 0.59 +0.7 971,495 + Synpcc7942_0963 0.62 +0.8 971,495 + Synpcc7942_0963 0.62 -0.1 971,495 + Synpcc7942_0963 0.62 +0.6 971,503 - Synpcc7942_0963 0.64 +0.7 971,503 - +0.4 971,504 + Synpcc7942_0963 0.64 +0.2 971,514 - Synpcc7942_0963 0.67 +0.4 971,514 - Synpcc7942_0963 0.67 +0.3 971,523 + Synpcc7942_0963 0.69 -0.6 971,547 - Synpcc7942_0963 0.76 +0.7 971,548 + Synpcc7942_0963 0.76 +0.1 971,569 + Synpcc7942_0963 0.81 +0.4 971,592 - Synpcc7942_0963 0.87 -0.6 971,592 - Synpcc7942_0963 0.87 +0.2 971,614 + +0.1 971,647 - +0.1 971,647 - -0.5 971,702 - +0.0 971,702 - -0.4 971,707 - +0.3 971,721 + +0.2 971,721 + -2.0 971,729 - +0.4 971,762 + -0.9 971,770 - -1.3 971,808 + +0.5 971,811 - +0.3 971,848 - +0.3 971,855 + -0.3 971,907 - -1.0 971,907 - +0.6 971,907 - +0.1 971,929 - Synpcc7942_0964 0.14 -0.2 971,945 + Synpcc7942_0964 0.17 +0.6 971,957 + Synpcc7942_0964 0.19 +0.7 971,979 + Synpcc7942_0964 0.24 +0.5 972,002 + Synpcc7942_0964 0.28 -1.0 972,009 + Synpcc7942_0964 0.29 -0.9 972,014 + Synpcc7942_0964 0.30 +0.5 972,014 + Synpcc7942_0964 0.30 +0.7 972,014 + Synpcc7942_0964 0.30 +0.2 972,014 + Synpcc7942_0964 0.30 +0.1 972,014 + Synpcc7942_0964 0.30 +1.5 972,014 - Synpcc7942_0964 0.30 +0.2 972,022 - Synpcc7942_0964 0.32 +0.0 972,022 - Synpcc7942_0964 0.32 +0.3 972,031 + Synpcc7942_0964 0.34 +0.6 972,031 + Synpcc7942_0964 0.34 -0.5 972,039 - Synpcc7942_0964 0.35 +0.6 972,048 + Synpcc7942_0964 0.37 +0.4 972,056 - Synpcc7942_0964 0.39 +0.7 972,056 - Synpcc7942_0964 0.39 -0.9 972,089 + Synpcc7942_0964 0.45 +0.5 972,089 + Synpcc7942_0964 0.45 -0.6 972,089 + Synpcc7942_0964 0.45 +0.5 972,095 + Synpcc7942_0964 0.46 -1.3 972,097 - Synpcc7942_0964 0.46 -0.3 972,097 - Synpcc7942_0964 0.46 -0.4 972,097 - Synpcc7942_0964 0.46 +0.1 972,098 - Synpcc7942_0964 0.47 +0.5 972,103 - Synpcc7942_0964 0.48 -0.1 972,105 + Synpcc7942_0964 0.48 +0.4 972,132 + Synpcc7942_0964 0.53 +0.7 972,134 + Synpcc7942_0964 0.54 -0.4 972,148 - Synpcc7942_0964 0.56 -0.0 972,159 + Synpcc7942_0964 0.58 +0.0 972,159 + Synpcc7942_0964 0.58 -0.2 972,159 + Synpcc7942_0964 0.58 +1.1 972,167 - Synpcc7942_0964 0.60 -0.4 972,172 + Synpcc7942_0964 0.61 +0.3 972,172 + Synpcc7942_0964 0.61 -0.4 972,172 + Synpcc7942_0964 0.61 -0.2 972,180 - Synpcc7942_0964 0.62 -0.0 972,180 - Synpcc7942_0964 0.62 +0.3 972,217 + Synpcc7942_0964 0.70 +0.3 972,241 + Synpcc7942_0964 0.74 +0.1 972,265 - Synpcc7942_0964 0.79 +0.4 972,318 + Synpcc7942_0964 0.89 +0.1 972,325 - -0.6 972,325 - +0.7 972,374 + +0.4 972,376 - +0.3 972,376 - -0.2 972,380 + -0.6 972,385 + +0.5 972,392 - -0.6 972,407 + -0.1 972,407 + +0.1 972,407 + +0.2 972,407 + +0.2 972,415 - -0.9 972,424 + +0.3 972,424 + +0.1 972,432 - -0.1 972,446 + -0.3 972,458 + +0.3 972,458 + +0.2 972,466 - +0.0 972,486 - amt1 Synpcc7942_0965 0.10 +0.5 972,495 + amt1 Synpcc7942_0965 0.11 -0.5 972,495 + amt1 Synpcc7942_0965 0.11 +0.2 972,498 - amt1 Synpcc7942_0965 0.11 -0.0 972,502 + amt1 Synpcc7942_0965 0.12 +0.3 972,503 - amt1 Synpcc7942_0965 0.12 -0.6 972,503 - amt1 Synpcc7942_0965 0.12 -2.1 972,529 - amt1 Synpcc7942_0965 0.15 +0.7 972,583 + amt1 Synpcc7942_0965 0.20 -0.5 972,596 + amt1 Synpcc7942_0965 0.22 -0.2 972,633 + amt1 Synpcc7942_0965 0.25 +0.5
Or see this region's nucleotide sequence