Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0910

Experiment: Light Dark first sampling rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0908 and ycf57 are separated by 147 nucleotidesycf57 and Synpcc7942_0910 are separated by 68 nucleotidesSynpcc7942_0910 and Synpcc7942_0911 are separated by 9 nucleotidesSynpcc7942_0911 and dnaX are separated by 75 nucleotides Synpcc7942_0908: Synpcc7942_0908 - hypothetical protein, at 917,280 to 917,987 _0908 Synpcc7942_0909: ycf57 - HesB/YadR/YfhF, at 918,135 to 918,491 ycf57 Synpcc7942_0910: Synpcc7942_0910 - hypothetical protein, at 918,560 to 918,988 _0910 Synpcc7942_0911: Synpcc7942_0911 - hypothetical protein, at 918,998 to 919,249 _0911 Synpcc7942_0912: dnaX - DNA polymerase III, tau subunit, at 919,325 to 921,283 dnaX Position (kb) 918 919Strain fitness (log2 ratio) -2 -1 0 1at 917.587 kb on - strand, within Synpcc7942_0908at 917.616 kb on - strand, within Synpcc7942_0908at 917.628 kb on + strand, within Synpcc7942_0908at 917.702 kb on - strand, within Synpcc7942_0908at 917.727 kb on + strand, within Synpcc7942_0908at 917.786 kb on - strand, within Synpcc7942_0908at 917.798 kb on - strand, within Synpcc7942_0908at 917.828 kb on + strand, within Synpcc7942_0908at 917.828 kb on + strand, within Synpcc7942_0908at 917.841 kb on + strand, within Synpcc7942_0908at 917.849 kb on - strand, within Synpcc7942_0908at 917.876 kb on + strand, within Synpcc7942_0908at 917.884 kb on - strand, within Synpcc7942_0908at 917.899 kb on + strand, within Synpcc7942_0908at 917.899 kb on - strand, within Synpcc7942_0908at 917.910 kb on - strand, within Synpcc7942_0908at 917.917 kb on - strandat 917.929 kb on - strandat 917.988 kb on + strandat 917.988 kb on + strandat 917.988 kb on + strandat 917.988 kb on + strandat 917.995 kb on + strandat 917.996 kb on - strandat 917.996 kb on - strandat 917.996 kb on - strandat 918.003 kb on + strandat 918.003 kb on + strandat 918.003 kb on + strandat 918.003 kb on + strandat 918.003 kb on - strandat 918.011 kb on - strandat 918.011 kb on - strandat 918.011 kb on - strandat 918.016 kb on - strandat 918.023 kb on - strandat 918.029 kb on - strandat 918.048 kb on + strandat 918.058 kb on - strandat 918.074 kb on - strandat 918.112 kb on - strandat 918.124 kb on + strandat 918.132 kb on - strandat 918.205 kb on - strand, within ycf57at 918.275 kb on + strand, within ycf57at 918.275 kb on + strand, within ycf57at 918.275 kb on + strand, within ycf57at 918.275 kb on + strand, within ycf57at 918.275 kb on + strand, within ycf57at 918.275 kb on + strand, within ycf57at 918.275 kb on + strand, within ycf57at 918.275 kb on + strand, within ycf57at 918.275 kb on + strand, within ycf57at 918.278 kb on - strand, within ycf57at 918.283 kb on - strand, within ycf57at 918.283 kb on - strand, within ycf57at 918.283 kb on - strand, within ycf57at 918.283 kb on - strand, within ycf57at 918.283 kb on - strand, within ycf57at 918.283 kb on - strand, within ycf57at 918.283 kb on - strand, within ycf57at 918.283 kb on - strand, within ycf57at 918.298 kb on + strandat 918.306 kb on - strand, within ycf57at 918.306 kb on - strand, within ycf57at 918.335 kb on - strand, within ycf57at 918.361 kb on - strand, within ycf57at 918.424 kb on - strand, within ycf57at 918.437 kb on + strand, within ycf57at 918.443 kb on + strand, within ycf57at 918.451 kb on - strand, within ycf57at 918.451 kb on - strand, within ycf57at 918.451 kb on - strand, within ycf57at 918.451 kb on - strand, within ycf57at 918.453 kb on + strand, within ycf57at 918.461 kb on - strandat 918.476 kb on + strandat 918.516 kb on + strandat 918.521 kb on + strandat 918.521 kb on + strandat 918.524 kb on - strandat 918.589 kb on + strandat 918.618 kb on - strand, within Synpcc7942_0910at 918.668 kb on + strand, within Synpcc7942_0910at 918.676 kb on - strand, within Synpcc7942_0910at 918.679 kb on + strand, within Synpcc7942_0910at 918.688 kb on + strand, within Synpcc7942_0910at 918.689 kb on + strand, within Synpcc7942_0910at 918.742 kb on + strand, within Synpcc7942_0910at 918.769 kb on + strand, within Synpcc7942_0910at 918.781 kb on + strand, within Synpcc7942_0910at 918.782 kb on - strand, within Synpcc7942_0910at 918.796 kb on + strand, within Synpcc7942_0910at 918.829 kb on + strand, within Synpcc7942_0910at 918.829 kb on + strand, within Synpcc7942_0910at 918.829 kb on + strand, within Synpcc7942_0910at 918.829 kb on + strand, within Synpcc7942_0910at 918.829 kb on + strand, within Synpcc7942_0910at 918.837 kb on - strand, within Synpcc7942_0910at 918.837 kb on - strand, within Synpcc7942_0910at 918.837 kb on - strand, within Synpcc7942_0910at 918.847 kb on + strand, within Synpcc7942_0910at 918.863 kb on - strand, within Synpcc7942_0910at 918.882 kb on + strand, within Synpcc7942_0910at 918.882 kb on + strand, within Synpcc7942_0910at 918.882 kb on + strandat 918.882 kb on + strand, within Synpcc7942_0910at 918.882 kb on + strand, within Synpcc7942_0910at 918.894 kb on + strand, within Synpcc7942_0910at 918.902 kb on - strand, within Synpcc7942_0910at 918.902 kb on - strand, within Synpcc7942_0910at 918.923 kb on + strand, within Synpcc7942_0910at 918.931 kb on + strand, within Synpcc7942_0910at 918.931 kb on - strand, within Synpcc7942_0910at 918.951 kb on + strandat 918.953 kb on - strandat 918.958 kb on - strandat 918.967 kb on + strandat 918.975 kb on - strandat 918.983 kb on + strandat 918.983 kb on + strandat 918.983 kb on + strandat 918.995 kb on - strandat 919.013 kb on - strandat 919.050 kb on + strand, within Synpcc7942_0911at 919.067 kb on - strandat 919.088 kb on + strand, within Synpcc7942_0911at 919.088 kb on + strand, within Synpcc7942_0911at 919.094 kb on - strandat 919.096 kb on - strand, within Synpcc7942_0911at 919.096 kb on - strand, within Synpcc7942_0911at 919.120 kb on - strand, within Synpcc7942_0911at 919.127 kb on - strand, within Synpcc7942_0911at 919.164 kb on + strand, within Synpcc7942_0911at 919.172 kb on - strand, within Synpcc7942_0911at 919.172 kb on - strand, within Synpcc7942_0911at 919.172 kb on - strand, within Synpcc7942_0911at 919.174 kb on + strand, within Synpcc7942_0911at 919.190 kb on + strand, within Synpcc7942_0911at 919.193 kb on - strand, within Synpcc7942_0911at 919.193 kb on - strandat 919.193 kb on - strand, within Synpcc7942_0911at 919.198 kb on - strand, within Synpcc7942_0911at 919.198 kb on - strand, within Synpcc7942_0911at 919.200 kb on - strand, within Synpcc7942_0911at 919.207 kb on + strand, within Synpcc7942_0911at 919.209 kb on - strand, within Synpcc7942_0911at 919.244 kb on + strandat 919.252 kb on - strandat 919.271 kb on - strandat 919.282 kb on + strandat 919.295 kb on - strandat 919.322 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Light Dark first sampling rep2
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917,587 - Synpcc7942_0908 0.43 -0.2
917,616 - Synpcc7942_0908 0.47 -0.9
917,628 + Synpcc7942_0908 0.49 +0.1
917,702 - Synpcc7942_0908 0.60 -0.1
917,727 + Synpcc7942_0908 0.63 +0.9
917,786 - Synpcc7942_0908 0.71 +0.7
917,798 - Synpcc7942_0908 0.73 +0.7
917,828 + Synpcc7942_0908 0.77 +0.7
917,828 + Synpcc7942_0908 0.77 -0.8
917,841 + Synpcc7942_0908 0.79 +1.2
917,849 - Synpcc7942_0908 0.80 -0.6
917,876 + Synpcc7942_0908 0.84 -0.3
917,884 - Synpcc7942_0908 0.85 -0.4
917,899 + Synpcc7942_0908 0.87 +0.2
917,899 - Synpcc7942_0908 0.87 +0.5
917,910 - Synpcc7942_0908 0.89 +0.1
917,917 - +0.2
917,929 - +0.0
917,988 + +0.0
917,988 + +0.5
917,988 + -0.5
917,988 + -1.2
917,995 + +1.3
917,996 - -0.5
917,996 - +0.1
917,996 - +0.6
918,003 + -1.2
918,003 + +0.0
918,003 + +0.7
918,003 + -0.2
918,003 - +0.5
918,011 - -0.2
918,011 - +0.1
918,011 - +0.6
918,016 - +0.2
918,023 - -0.3
918,029 - +0.5
918,048 + -0.6
918,058 - +0.4
918,074 - +0.4
918,112 - +0.6
918,124 + +0.2
918,132 - -2.3
918,205 - ycf57 Synpcc7942_0909 0.20 +0.3
918,275 + ycf57 Synpcc7942_0909 0.39 +0.7
918,275 + ycf57 Synpcc7942_0909 0.39 +0.6
918,275 + ycf57 Synpcc7942_0909 0.39 -0.4
918,275 + ycf57 Synpcc7942_0909 0.39 +0.2
918,275 + ycf57 Synpcc7942_0909 0.39 +0.3
918,275 + ycf57 Synpcc7942_0909 0.39 +0.2
918,275 + ycf57 Synpcc7942_0909 0.39 -0.3
918,275 + ycf57 Synpcc7942_0909 0.39 +1.0
918,275 + ycf57 Synpcc7942_0909 0.39 -1.2
918,278 - ycf57 Synpcc7942_0909 0.40 +0.9
918,283 - ycf57 Synpcc7942_0909 0.41 +0.1
918,283 - ycf57 Synpcc7942_0909 0.41 +0.2
918,283 - ycf57 Synpcc7942_0909 0.41 +0.4
918,283 - ycf57 Synpcc7942_0909 0.41 -0.4
918,283 - ycf57 Synpcc7942_0909 0.41 -0.0
918,283 - ycf57 Synpcc7942_0909 0.41 +0.6
918,283 - ycf57 Synpcc7942_0909 0.41 +0.3
918,283 - ycf57 Synpcc7942_0909 0.41 +0.0
918,298 + -1.9
918,306 - ycf57 Synpcc7942_0909 0.48 +0.7
918,306 - ycf57 Synpcc7942_0909 0.48 -0.2
918,335 - ycf57 Synpcc7942_0909 0.56 -1.9
918,361 - ycf57 Synpcc7942_0909 0.63 -0.4
918,424 - ycf57 Synpcc7942_0909 0.81 -0.3
918,437 + ycf57 Synpcc7942_0909 0.85 -0.6
918,443 + ycf57 Synpcc7942_0909 0.86 -0.2
918,451 - ycf57 Synpcc7942_0909 0.89 -0.1
918,451 - ycf57 Synpcc7942_0909 0.89 -0.8
918,451 - ycf57 Synpcc7942_0909 0.89 -0.3
918,451 - ycf57 Synpcc7942_0909 0.89 -0.8
918,453 + ycf57 Synpcc7942_0909 0.89 -0.8
918,461 - +1.0
918,476 + +0.9
918,516 + -0.4
918,521 + -0.4
918,521 + +0.1
918,524 - -0.3
918,589 + +0.2
918,618 - Synpcc7942_0910 0.14 +0.1
918,668 + Synpcc7942_0910 0.25 +0.1
918,676 - Synpcc7942_0910 0.27 +0.5
918,679 + Synpcc7942_0910 0.28 -1.0
918,688 + Synpcc7942_0910 0.30 +0.8
918,689 + Synpcc7942_0910 0.30 +0.1
918,742 + Synpcc7942_0910 0.42 +0.8
918,769 + Synpcc7942_0910 0.49 -0.0
918,781 + Synpcc7942_0910 0.52 -0.9
918,782 - Synpcc7942_0910 0.52 +0.4
918,796 + Synpcc7942_0910 0.55 +0.6
918,829 + Synpcc7942_0910 0.63 +0.3
918,829 + Synpcc7942_0910 0.63 +0.7
918,829 + Synpcc7942_0910 0.63 +0.4
918,829 + Synpcc7942_0910 0.63 +0.1
918,829 + Synpcc7942_0910 0.63 +0.1
918,837 - Synpcc7942_0910 0.65 +0.7
918,837 - Synpcc7942_0910 0.65 -0.8
918,837 - Synpcc7942_0910 0.65 +0.8
918,847 + Synpcc7942_0910 0.67 +0.2
918,863 - Synpcc7942_0910 0.71 -1.1
918,882 + Synpcc7942_0910 0.75 +0.3
918,882 + Synpcc7942_0910 0.75 +0.7
918,882 + +1.1
918,882 + Synpcc7942_0910 0.75 +0.8
918,882 + Synpcc7942_0910 0.75 +0.5
918,894 + Synpcc7942_0910 0.78 +0.3
918,902 - Synpcc7942_0910 0.80 -0.1
918,902 - Synpcc7942_0910 0.80 +0.4
918,923 + Synpcc7942_0910 0.85 +0.2
918,931 + Synpcc7942_0910 0.86 +0.1
918,931 - Synpcc7942_0910 0.86 +0.6
918,951 + +0.5
918,953 - +0.1
918,958 - +0.4
918,967 + +0.2
918,975 - +0.4
918,983 + +0.2
918,983 + -1.7
918,983 + -0.0
918,995 - +0.8
919,013 - -0.2
919,050 + Synpcc7942_0911 0.21 +0.0
919,067 - +0.2
919,088 + Synpcc7942_0911 0.36 +0.4
919,088 + Synpcc7942_0911 0.36 -0.1
919,094 - -1.2
919,096 - Synpcc7942_0911 0.39 -0.1
919,096 - Synpcc7942_0911 0.39 +0.2
919,120 - Synpcc7942_0911 0.48 +0.2
919,127 - Synpcc7942_0911 0.51 -0.0
919,164 + Synpcc7942_0911 0.66 +0.7
919,172 - Synpcc7942_0911 0.69 +0.1
919,172 - Synpcc7942_0911 0.69 -0.8
919,172 - Synpcc7942_0911 0.69 +0.1
919,174 + Synpcc7942_0911 0.70 -1.3
919,190 + Synpcc7942_0911 0.76 -0.1
919,193 - Synpcc7942_0911 0.77 -0.0
919,193 - -0.3
919,193 - Synpcc7942_0911 0.77 -0.2
919,198 - Synpcc7942_0911 0.79 +0.1
919,198 - Synpcc7942_0911 0.79 +0.8
919,200 - Synpcc7942_0911 0.80 +0.1
919,207 + Synpcc7942_0911 0.83 +0.1
919,209 - Synpcc7942_0911 0.84 +0.4
919,244 + +0.8
919,252 - +0.4
919,271 - +0.0
919,282 + -0.6
919,295 - +1.5
919,322 - -1.2

Or see this region's nucleotide sequence