Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0902

Experiment: Light Dark first sampling rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0901 and Synpcc7942_0902 are separated by 58 nucleotidesSynpcc7942_0902 and acnB are separated by 61 nucleotides Synpcc7942_0901: Synpcc7942_0901 - Haloalkane dehalogenase, at 909,780 to 910,676 _0901 Synpcc7942_0902: Synpcc7942_0902 - hypothetical protein, at 910,735 to 911,694 _0902 Synpcc7942_0903: acnB - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 911,756 to 914,341 acnB Position (kb) 910 911 912Strain fitness (log2 ratio) -2 -1 0 1at 909.777 kb on + strandat 909.782 kb on + strandat 909.821 kb on + strandat 909.824 kb on - strandat 909.879 kb on + strand, within Synpcc7942_0901at 909.883 kb on + strand, within Synpcc7942_0901at 909.893 kb on + strand, within Synpcc7942_0901at 909.914 kb on - strand, within Synpcc7942_0901at 909.939 kb on + strand, within Synpcc7942_0901at 909.947 kb on - strand, within Synpcc7942_0901at 909.947 kb on - strand, within Synpcc7942_0901at 909.953 kb on - strand, within Synpcc7942_0901at 909.962 kb on + strand, within Synpcc7942_0901at 909.992 kb on - strand, within Synpcc7942_0901at 910.002 kb on + strand, within Synpcc7942_0901at 910.012 kb on + strand, within Synpcc7942_0901at 910.020 kb on - strand, within Synpcc7942_0901at 910.023 kb on + strand, within Synpcc7942_0901at 910.036 kb on + strand, within Synpcc7942_0901at 910.036 kb on + strand, within Synpcc7942_0901at 910.044 kb on - strand, within Synpcc7942_0901at 910.044 kb on - strand, within Synpcc7942_0901at 910.054 kb on - strand, within Synpcc7942_0901at 910.063 kb on + strand, within Synpcc7942_0901at 910.073 kb on - strand, within Synpcc7942_0901at 910.099 kb on + strand, within Synpcc7942_0901at 910.104 kb on + strand, within Synpcc7942_0901at 910.112 kb on - strand, within Synpcc7942_0901at 910.112 kb on - strand, within Synpcc7942_0901at 910.118 kb on - strand, within Synpcc7942_0901at 910.134 kb on + strand, within Synpcc7942_0901at 910.134 kb on + strand, within Synpcc7942_0901at 910.134 kb on + strand, within Synpcc7942_0901at 910.140 kb on + strand, within Synpcc7942_0901at 910.142 kb on - strand, within Synpcc7942_0901at 910.142 kb on - strand, within Synpcc7942_0901at 910.142 kb on - strand, within Synpcc7942_0901at 910.163 kb on + strand, within Synpcc7942_0901at 910.163 kb on + strand, within Synpcc7942_0901at 910.163 kb on + strand, within Synpcc7942_0901at 910.163 kb on + strand, within Synpcc7942_0901at 910.163 kb on + strand, within Synpcc7942_0901at 910.171 kb on + strand, within Synpcc7942_0901at 910.171 kb on - strand, within Synpcc7942_0901at 910.171 kb on - strand, within Synpcc7942_0901at 910.171 kb on - strand, within Synpcc7942_0901at 910.171 kb on - strand, within Synpcc7942_0901at 910.171 kb on - strand, within Synpcc7942_0901at 910.171 kb on - strand, within Synpcc7942_0901at 910.181 kb on - strand, within Synpcc7942_0901at 910.183 kb on - strand, within Synpcc7942_0901at 910.208 kb on + strand, within Synpcc7942_0901at 910.208 kb on + strand, within Synpcc7942_0901at 910.211 kb on - strand, within Synpcc7942_0901at 910.211 kb on - strand, within Synpcc7942_0901at 910.216 kb on - strand, within Synpcc7942_0901at 910.216 kb on - strand, within Synpcc7942_0901at 910.216 kb on - strand, within Synpcc7942_0901at 910.219 kb on - strand, within Synpcc7942_0901at 910.220 kb on + strand, within Synpcc7942_0901at 910.228 kb on - strand, within Synpcc7942_0901at 910.242 kb on + strand, within Synpcc7942_0901at 910.268 kb on + strand, within Synpcc7942_0901at 910.316 kb on - strand, within Synpcc7942_0901at 910.342 kb on + strand, within Synpcc7942_0901at 910.342 kb on + strand, within Synpcc7942_0901at 910.414 kb on + strand, within Synpcc7942_0901at 910.468 kb on + strand, within Synpcc7942_0901at 910.489 kb on - strand, within Synpcc7942_0901at 910.526 kb on + strand, within Synpcc7942_0901at 910.532 kb on + strand, within Synpcc7942_0901at 910.532 kb on + strand, within Synpcc7942_0901at 910.546 kb on - strand, within Synpcc7942_0901at 910.700 kb on + strandat 910.702 kb on + strandat 910.708 kb on - strandat 910.708 kb on - strandat 910.808 kb on - strandat 910.810 kb on + strandat 910.849 kb on - strand, within Synpcc7942_0902at 910.931 kb on + strand, within Synpcc7942_0902at 910.990 kb on - strand, within Synpcc7942_0902at 911.010 kb on + strand, within Synpcc7942_0902at 911.025 kb on - strand, within Synpcc7942_0902at 911.037 kb on + strand, within Synpcc7942_0902at 911.184 kb on - strand, within Synpcc7942_0902at 911.209 kb on - strand, within Synpcc7942_0902at 911.233 kb on + strand, within Synpcc7942_0902at 911.243 kb on + strand, within Synpcc7942_0902at 911.278 kb on - strand, within Synpcc7942_0902at 911.297 kb on + strand, within Synpcc7942_0902at 911.312 kb on - strand, within Synpcc7942_0902at 911.450 kb on + strand, within Synpcc7942_0902at 911.458 kb on - strand, within Synpcc7942_0902at 911.473 kb on + strand, within Synpcc7942_0902at 911.483 kb on + strand, within Synpcc7942_0902at 911.483 kb on + strand, within Synpcc7942_0902at 911.484 kb on + strandat 911.490 kb on - strand, within Synpcc7942_0902at 911.490 kb on - strand, within Synpcc7942_0902at 911.513 kb on - strand, within Synpcc7942_0902at 911.513 kb on - strand, within Synpcc7942_0902at 911.539 kb on - strand, within Synpcc7942_0902at 911.551 kb on + strand, within Synpcc7942_0902at 911.552 kb on + strand, within Synpcc7942_0902at 911.584 kb on + strand, within Synpcc7942_0902at 911.619 kb on + strandat 911.619 kb on + strandat 911.642 kb on + strandat 911.645 kb on - strandat 911.670 kb on - strandat 911.752 kb on + strandat 911.753 kb on + strandat 911.754 kb on + strandat 911.756 kb on + strandat 911.761 kb on - strandat 911.764 kb on - strandat 911.764 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Light Dark first sampling rep2
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909,777 + +0.2
909,782 + +0.6
909,821 + +0.3
909,824 - +0.8
909,879 + Synpcc7942_0901 0.11 +0.4
909,883 + Synpcc7942_0901 0.11 -0.6
909,893 + Synpcc7942_0901 0.13 +0.3
909,914 - Synpcc7942_0901 0.15 +0.6
909,939 + Synpcc7942_0901 0.18 -2.2
909,947 - Synpcc7942_0901 0.19 +0.1
909,947 - Synpcc7942_0901 0.19 -0.1
909,953 - Synpcc7942_0901 0.19 -0.6
909,962 + Synpcc7942_0901 0.20 +0.2
909,992 - Synpcc7942_0901 0.24 -0.1
910,002 + Synpcc7942_0901 0.25 -0.1
910,012 + Synpcc7942_0901 0.26 -1.0
910,020 - Synpcc7942_0901 0.27 -0.4
910,023 + Synpcc7942_0901 0.27 +0.5
910,036 + Synpcc7942_0901 0.29 +0.5
910,036 + Synpcc7942_0901 0.29 +0.1
910,044 - Synpcc7942_0901 0.29 -0.5
910,044 - Synpcc7942_0901 0.29 -0.7
910,054 - Synpcc7942_0901 0.31 -0.1
910,063 + Synpcc7942_0901 0.32 -0.4
910,073 - Synpcc7942_0901 0.33 +0.5
910,099 + Synpcc7942_0901 0.36 +1.1
910,104 + Synpcc7942_0901 0.36 +0.0
910,112 - Synpcc7942_0901 0.37 -1.2
910,112 - Synpcc7942_0901 0.37 -0.9
910,118 - Synpcc7942_0901 0.38 -0.3
910,134 + Synpcc7942_0901 0.39 +0.5
910,134 + Synpcc7942_0901 0.39 +0.3
910,134 + Synpcc7942_0901 0.39 +0.6
910,140 + Synpcc7942_0901 0.40 -0.4
910,142 - Synpcc7942_0901 0.40 -1.0
910,142 - Synpcc7942_0901 0.40 -0.5
910,142 - Synpcc7942_0901 0.40 +0.1
910,163 + Synpcc7942_0901 0.43 +0.2
910,163 + Synpcc7942_0901 0.43 +0.2
910,163 + Synpcc7942_0901 0.43 -2.1
910,163 + Synpcc7942_0901 0.43 -0.7
910,163 + Synpcc7942_0901 0.43 -0.2
910,171 + Synpcc7942_0901 0.44 -0.4
910,171 - Synpcc7942_0901 0.44 -0.8
910,171 - Synpcc7942_0901 0.44 +0.1
910,171 - Synpcc7942_0901 0.44 +0.3
910,171 - Synpcc7942_0901 0.44 +1.0
910,171 - Synpcc7942_0901 0.44 +0.0
910,171 - Synpcc7942_0901 0.44 +0.4
910,181 - Synpcc7942_0901 0.45 -0.8
910,183 - Synpcc7942_0901 0.45 +1.1
910,208 + Synpcc7942_0901 0.48 -0.2
910,208 + Synpcc7942_0901 0.48 -1.6
910,211 - Synpcc7942_0901 0.48 +0.1
910,211 - Synpcc7942_0901 0.48 +0.2
910,216 - Synpcc7942_0901 0.49 -2.2
910,216 - Synpcc7942_0901 0.49 +0.2
910,216 - Synpcc7942_0901 0.49 +0.4
910,219 - Synpcc7942_0901 0.49 +0.0
910,220 + Synpcc7942_0901 0.49 -0.1
910,228 - Synpcc7942_0901 0.50 -0.5
910,242 + Synpcc7942_0901 0.52 +0.1
910,268 + Synpcc7942_0901 0.54 -2.4
910,316 - Synpcc7942_0901 0.60 +0.4
910,342 + Synpcc7942_0901 0.63 +0.1
910,342 + Synpcc7942_0901 0.63 +0.4
910,414 + Synpcc7942_0901 0.71 +0.6
910,468 + Synpcc7942_0901 0.77 -0.4
910,489 - Synpcc7942_0901 0.79 +0.4
910,526 + Synpcc7942_0901 0.83 -1.5
910,532 + Synpcc7942_0901 0.84 +1.5
910,532 + Synpcc7942_0901 0.84 +0.9
910,546 - Synpcc7942_0901 0.85 +0.6
910,700 + -0.1
910,702 + +0.6
910,708 - +0.1
910,708 - -0.2
910,808 - +0.8
910,810 + +0.4
910,849 - Synpcc7942_0902 0.12 -0.8
910,931 + Synpcc7942_0902 0.20 +0.6
910,990 - Synpcc7942_0902 0.27 -0.2
911,010 + Synpcc7942_0902 0.29 +1.6
911,025 - Synpcc7942_0902 0.30 +0.2
911,037 + Synpcc7942_0902 0.31 +0.3
911,184 - Synpcc7942_0902 0.47 +0.3
911,209 - Synpcc7942_0902 0.49 -0.0
911,233 + Synpcc7942_0902 0.52 +0.7
911,243 + Synpcc7942_0902 0.53 -0.3
911,278 - Synpcc7942_0902 0.57 -0.0
911,297 + Synpcc7942_0902 0.59 +0.9
911,312 - Synpcc7942_0902 0.60 +0.4
911,450 + Synpcc7942_0902 0.74 +0.3
911,458 - Synpcc7942_0902 0.75 -0.6
911,473 + Synpcc7942_0902 0.77 +0.3
911,483 + Synpcc7942_0902 0.78 -0.0
911,483 + Synpcc7942_0902 0.78 -0.6
911,484 + +0.1
911,490 - Synpcc7942_0902 0.79 -1.9
911,490 - Synpcc7942_0902 0.79 +0.7
911,513 - Synpcc7942_0902 0.81 -0.1
911,513 - Synpcc7942_0902 0.81 +1.3
911,539 - Synpcc7942_0902 0.84 -0.4
911,551 + Synpcc7942_0902 0.85 -0.0
911,552 + Synpcc7942_0902 0.85 -0.1
911,584 + Synpcc7942_0902 0.88 +0.3
911,619 + -1.1
911,619 + -0.1
911,642 + -0.6
911,645 - +0.2
911,670 - +0.6
911,752 + +0.1
911,753 + +0.2
911,754 + +0.3
911,756 + +1.0
911,761 - -0.4
911,764 - +0.3
911,764 - -0.1

Or see this region's nucleotide sequence