Experiment: Light Dark first sampling rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pixG and pilH/rre7 are separated by 50 nucleotides pilH/rre7 and Synpcc7942_0857 are separated by 19 nucleotides Synpcc7942_0857 and pixJ1 are separated by 71 nucleotides
Synpcc7942_0855: pixG - response regulator receiver domain protein (CheY-like), at 853,629 to 854,882
pixG
Synpcc7942_0856: pilH/rre7 - response regulator receiver domain protein (CheY-like), at 854,933 to 855,295
pilH/rre7
Synpcc7942_0857: Synpcc7942_0857 - CheW protein, at 855,315 to 855,821
_0857
Synpcc7942_0858: pixJ1 - methyl-accepting chemotaxis sensory transducer with phytochrome sensor, at 855,893 to 860,113
pixJ1
Position (kb) 855
856 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 854.347 kb on + strand, within pixG at 854.347 kb on + strand, within pixG at 854.355 kb on - strand, within pixG at 854.686 kb on + strand, within pixG at 854.819 kb on - strand at 854.922 kb on - strand at 854.922 kb on - strand at 854.922 kb on - strand at 854.929 kb on + strand at 854.929 kb on + strand at 854.929 kb on + strand at 854.945 kb on - strand at 854.950 kb on - strand at 855.006 kb on + strand, within pilH/rre7 at 855.036 kb on + strand, within pilH/rre7 at 855.046 kb on + strand, within pilH/rre7 at 855.066 kb on + strand, within pilH/rre7 at 855.111 kb on + strand, within pilH/rre7 at 855.210 kb on - strand, within pilH/rre7 at 855.246 kb on - strand, within pilH/rre7 at 855.246 kb on - strand, within pilH/rre7 at 855.284 kb on + strand at 855.309 kb on - strand at 855.309 kb on - strand at 855.325 kb on - strand at 855.454 kb on + strand, within Synpcc7942_0857 at 855.456 kb on + strand, within Synpcc7942_0857 at 855.462 kb on - strand, within Synpcc7942_0857 at 855.462 kb on - strand, within Synpcc7942_0857 at 855.490 kb on + strand, within Synpcc7942_0857 at 855.495 kb on + strand, within Synpcc7942_0857 at 855.495 kb on + strand, within Synpcc7942_0857 at 855.495 kb on + strand, within Synpcc7942_0857 at 855.503 kb on - strand, within Synpcc7942_0857 at 855.503 kb on - strand, within Synpcc7942_0857 at 855.503 kb on - strand, within Synpcc7942_0857 at 855.506 kb on + strand, within Synpcc7942_0857 at 855.548 kb on - strand, within Synpcc7942_0857 at 855.637 kb on - strand, within Synpcc7942_0857 at 855.702 kb on + strand, within Synpcc7942_0857 at 855.708 kb on - strand, within Synpcc7942_0857 at 855.755 kb on - strand, within Synpcc7942_0857 at 855.780 kb on + strand at 855.799 kb on - strand at 855.816 kb on + strand at 855.816 kb on + strand at 855.816 kb on + strand at 855.824 kb on - strand at 855.824 kb on - strand at 855.824 kb on - strand at 855.824 kb on - strand at 855.872 kb on + strand at 855.872 kb on + strand at 855.874 kb on + strand at 855.874 kb on + strand at 855.874 kb on + strand at 855.874 kb on + strand at 855.882 kb on - strand at 855.890 kb on + strand at 855.895 kb on + strand at 855.895 kb on + strand at 855.903 kb on - strand at 855.956 kb on - strand at 855.960 kb on + strand at 855.960 kb on + strand at 855.960 kb on + strand at 855.965 kb on + strand at 855.965 kb on + strand at 855.968 kb on - strand at 855.983 kb on - strand at 855.985 kb on + strand at 855.988 kb on - strand at 856.029 kb on - strand at 856.041 kb on - strand at 856.052 kb on + strand at 856.060 kb on - strand at 856.067 kb on - strand at 856.073 kb on - strand at 856.103 kb on + strand at 856.110 kb on + strand at 856.110 kb on + strand at 856.110 kb on + strand at 856.110 kb on + strand at 856.110 kb on + strand at 856.111 kb on - strand at 856.111 kb on - strand at 856.118 kb on - strand at 856.118 kb on - strand at 856.124 kb on + strand at 856.124 kb on + strand at 856.132 kb on - strand at 856.133 kb on + strand at 856.167 kb on - strand at 856.189 kb on + strand at 856.197 kb on - strand at 856.197 kb on - strand at 856.197 kb on - strand at 856.197 kb on - strand at 856.212 kb on - strand at 856.231 kb on + strand at 856.231 kb on + strand at 856.231 kb on + strand at 856.231 kb on + strand at 856.231 kb on + strand at 856.231 kb on + strand at 856.239 kb on - strand at 856.239 kb on - strand at 856.239 kb on - strand at 856.280 kb on + strand at 856.280 kb on + strand at 856.288 kb on - strand at 856.298 kb on + strand at 856.304 kb on + strand at 856.336 kb on + strand, within pixJ1 at 856.349 kb on - strand, within pixJ1 at 856.358 kb on - strand, within pixJ1 at 856.375 kb on - strand, within pixJ1 at 856.394 kb on + strand, within pixJ1 at 856.429 kb on + strand, within pixJ1 at 856.429 kb on + strand, within pixJ1 at 856.429 kb on + strand, within pixJ1 at 856.439 kb on + strand, within pixJ1 at 856.439 kb on + strand, within pixJ1 at 856.439 kb on + strand, within pixJ1 at 856.447 kb on - strand, within pixJ1 at 856.447 kb on - strand, within pixJ1 at 856.447 kb on - strand, within pixJ1 at 856.447 kb on - strand, within pixJ1 at 856.447 kb on - strand, within pixJ1 at 856.485 kb on - strand, within pixJ1 at 856.495 kb on - strand, within pixJ1 at 856.568 kb on + strand, within pixJ1 at 856.568 kb on + strand, within pixJ1 at 856.576 kb on - strand, within pixJ1 at 856.576 kb on - strand, within pixJ1 at 856.576 kb on - strand, within pixJ1 at 856.584 kb on - strand, within pixJ1 at 856.596 kb on - strand, within pixJ1 at 856.612 kb on + strand, within pixJ1 at 856.617 kb on + strand, within pixJ1 at 856.635 kb on - strand, within pixJ1 at 856.662 kb on + strand, within pixJ1 at 856.670 kb on - strand, within pixJ1 at 856.670 kb on - strand, within pixJ1 at 856.670 kb on - strand, within pixJ1 at 856.672 kb on + strand, within pixJ1 at 856.672 kb on + strand, within pixJ1 at 856.672 kb on + strand, within pixJ1 at 856.680 kb on - strand, within pixJ1 at 856.718 kb on + strand, within pixJ1 at 856.726 kb on - strand, within pixJ1 at 856.729 kb on + strand, within pixJ1
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep2 remove 854,347 + pixG Synpcc7942_0855 0.57 +0.4 854,347 + pixG Synpcc7942_0855 0.57 +0.3 854,355 - pixG Synpcc7942_0855 0.58 +0.6 854,686 + pixG Synpcc7942_0855 0.84 +0.1 854,819 - -0.4 854,922 - -0.1 854,922 - +0.0 854,922 - -0.2 854,929 + +0.8 854,929 + -0.0 854,929 + +0.4 854,945 - +1.0 854,950 - +0.4 855,006 + pilH/rre7 Synpcc7942_0856 0.20 -0.1 855,036 + pilH/rre7 Synpcc7942_0856 0.28 +0.1 855,046 + pilH/rre7 Synpcc7942_0856 0.31 -3.1 855,066 + pilH/rre7 Synpcc7942_0856 0.37 -0.0 855,111 + pilH/rre7 Synpcc7942_0856 0.49 -0.4 855,210 - pilH/rre7 Synpcc7942_0856 0.76 -0.6 855,246 - pilH/rre7 Synpcc7942_0856 0.86 +0.6 855,246 - pilH/rre7 Synpcc7942_0856 0.86 +0.9 855,284 + -3.1 855,309 - +1.0 855,309 - -0.7 855,325 - -0.1 855,454 + Synpcc7942_0857 0.27 +0.1 855,456 + Synpcc7942_0857 0.28 +0.9 855,462 - Synpcc7942_0857 0.29 +0.3 855,462 - Synpcc7942_0857 0.29 +0.2 855,490 + Synpcc7942_0857 0.35 -0.3 855,495 + Synpcc7942_0857 0.36 +0.4 855,495 + Synpcc7942_0857 0.36 +0.3 855,495 + Synpcc7942_0857 0.36 -0.4 855,503 - Synpcc7942_0857 0.37 +0.3 855,503 - Synpcc7942_0857 0.37 +0.3 855,503 - Synpcc7942_0857 0.37 -0.3 855,506 + Synpcc7942_0857 0.38 +0.5 855,548 - Synpcc7942_0857 0.46 -0.5 855,637 - Synpcc7942_0857 0.64 -0.8 855,702 + Synpcc7942_0857 0.76 -0.1 855,708 - Synpcc7942_0857 0.78 +1.1 855,755 - Synpcc7942_0857 0.87 +1.1 855,780 + +0.6 855,799 - +1.2 855,816 + -1.8 855,816 + -0.1 855,816 + +0.5 855,824 - +0.5 855,824 - +0.6 855,824 - +0.6 855,824 - -0.3 855,872 + +0.3 855,872 + +0.3 855,874 + +0.2 855,874 + -0.8 855,874 + +0.2 855,874 + +1.1 855,882 - -0.1 855,890 + -0.5 855,895 + +0.3 855,895 + -2.7 855,903 - +0.5 855,956 - +1.3 855,960 + -0.6 855,960 + +0.3 855,960 + -1.1 855,965 + +0.1 855,965 + -0.2 855,968 - -0.3 855,983 - -0.1 855,985 + -2.0 855,988 - -0.0 856,029 - +0.5 856,041 - +0.3 856,052 + -0.6 856,060 - +0.1 856,067 - +0.1 856,073 - -3.1 856,103 + +0.3 856,110 + +0.5 856,110 + +0.7 856,110 + +0.6 856,110 + +1.1 856,110 + -0.2 856,111 - -0.6 856,111 - -0.1 856,118 - +0.5 856,118 - -0.4 856,124 + +0.3 856,124 + +0.0 856,132 - +1.0 856,133 + -0.1 856,167 - -0.7 856,189 + +0.8 856,197 - +0.2 856,197 - -0.0 856,197 - -0.2 856,197 - +1.1 856,212 - -1.1 856,231 + +0.8 856,231 + +0.5 856,231 + +0.0 856,231 + -0.2 856,231 + -0.2 856,231 + -0.7 856,239 - -0.7 856,239 - -0.0 856,239 - -0.2 856,280 + -0.2 856,280 + -0.4 856,288 - +0.2 856,298 + -0.6 856,304 + +0.8 856,336 + pixJ1 Synpcc7942_0858 0.10 -1.0 856,349 - pixJ1 Synpcc7942_0858 0.11 +0.1 856,358 - pixJ1 Synpcc7942_0858 0.11 +0.2 856,375 - pixJ1 Synpcc7942_0858 0.11 +1.2 856,394 + pixJ1 Synpcc7942_0858 0.12 +0.4 856,429 + pixJ1 Synpcc7942_0858 0.13 +0.2 856,429 + pixJ1 Synpcc7942_0858 0.13 +0.8 856,429 + pixJ1 Synpcc7942_0858 0.13 +0.3 856,439 + pixJ1 Synpcc7942_0858 0.13 +0.6 856,439 + pixJ1 Synpcc7942_0858 0.13 +0.7 856,439 + pixJ1 Synpcc7942_0858 0.13 -1.2 856,447 - pixJ1 Synpcc7942_0858 0.13 +0.1 856,447 - pixJ1 Synpcc7942_0858 0.13 +0.0 856,447 - pixJ1 Synpcc7942_0858 0.13 -0.2 856,447 - pixJ1 Synpcc7942_0858 0.13 +0.4 856,447 - pixJ1 Synpcc7942_0858 0.13 +0.2 856,485 - pixJ1 Synpcc7942_0858 0.14 +0.6 856,495 - pixJ1 Synpcc7942_0858 0.14 -0.2 856,568 + pixJ1 Synpcc7942_0858 0.16 +0.5 856,568 + pixJ1 Synpcc7942_0858 0.16 +0.3 856,576 - pixJ1 Synpcc7942_0858 0.16 +1.0 856,576 - pixJ1 Synpcc7942_0858 0.16 -1.3 856,576 - pixJ1 Synpcc7942_0858 0.16 +0.5 856,584 - pixJ1 Synpcc7942_0858 0.16 +1.0 856,596 - pixJ1 Synpcc7942_0858 0.17 +0.6 856,612 + pixJ1 Synpcc7942_0858 0.17 -0.6 856,617 + pixJ1 Synpcc7942_0858 0.17 -0.2 856,635 - pixJ1 Synpcc7942_0858 0.18 +0.3 856,662 + pixJ1 Synpcc7942_0858 0.18 +0.1 856,670 - pixJ1 Synpcc7942_0858 0.18 -0.1 856,670 - pixJ1 Synpcc7942_0858 0.18 +0.2 856,670 - pixJ1 Synpcc7942_0858 0.18 +0.0 856,672 + pixJ1 Synpcc7942_0858 0.18 +0.3 856,672 + pixJ1 Synpcc7942_0858 0.18 -0.3 856,672 + pixJ1 Synpcc7942_0858 0.18 +0.6 856,680 - pixJ1 Synpcc7942_0858 0.19 -0.1 856,718 + pixJ1 Synpcc7942_0858 0.20 -0.1 856,726 - pixJ1 Synpcc7942_0858 0.20 -0.4 856,729 + pixJ1 Synpcc7942_0858 0.20 -0.4
Or see this region's nucleotide sequence