Experiment: Light Dark first sampling rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0828 and Synpcc7942_0829 are separated by 264 nucleotides Synpcc7942_0829 and asnC are separated by 103 nucleotides asnC and Synpcc7942_0831 are separated by 72 nucleotides
Synpcc7942_0828: Synpcc7942_0828 - hypothetical protein, at 822,873 to 823,241
_0828
Synpcc7942_0829: Synpcc7942_0829 - Lipoproteins-like, at 823,506 to 823,838
_0829
Synpcc7942_0830: asnC - asparaginyl-tRNA synthetase, at 823,942 to 825,330
asnC
Synpcc7942_0831: Synpcc7942_0831 - hypothetical protein, at 825,403 to 826,005
_0831
Position (kb) 823
824
825
826 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 822.950 kb on - strand, within Synpcc7942_0828 at 822.961 kb on + strand, within Synpcc7942_0828 at 822.968 kb on - strand, within Synpcc7942_0828 at 822.997 kb on + strand, within Synpcc7942_0828 at 823.005 kb on - strand, within Synpcc7942_0828 at 823.059 kb on + strand, within Synpcc7942_0828 at 823.115 kb on - strand, within Synpcc7942_0828 at 823.121 kb on + strand, within Synpcc7942_0828 at 823.129 kb on - strand, within Synpcc7942_0828 at 823.129 kb on - strand, within Synpcc7942_0828 at 823.230 kb on + strand at 823.231 kb on - strand at 823.267 kb on + strand at 823.280 kb on + strand at 823.288 kb on - strand at 823.342 kb on + strand at 823.347 kb on + strand at 823.347 kb on + strand at 823.351 kb on + strand at 823.355 kb on - strand at 823.383 kb on + strand at 823.447 kb on - strand at 823.481 kb on - strand at 823.481 kb on - strand at 823.563 kb on + strand, within Synpcc7942_0829 at 823.563 kb on + strand, within Synpcc7942_0829 at 823.585 kb on - strand at 823.590 kb on - strand, within Synpcc7942_0829 at 823.650 kb on + strand, within Synpcc7942_0829 at 823.658 kb on - strand, within Synpcc7942_0829 at 823.725 kb on - strand, within Synpcc7942_0829 at 823.758 kb on + strand, within Synpcc7942_0829 at 823.766 kb on - strand, within Synpcc7942_0829 at 823.767 kb on - strand, within Synpcc7942_0829 at 823.791 kb on + strand, within Synpcc7942_0829 at 823.804 kb on - strand, within Synpcc7942_0829 at 823.808 kb on - strand at 823.815 kb on + strand at 823.823 kb on - strand at 823.823 kb on - strand at 823.828 kb on + strand at 823.837 kb on + strand at 823.850 kb on + strand at 823.854 kb on + strand at 823.883 kb on + strand at 823.885 kb on + strand at 823.885 kb on + strand at 823.885 kb on + strand at 823.893 kb on - strand at 823.893 kb on - strand at 823.893 kb on - strand at 823.893 kb on - strand at 823.893 kb on - strand at 823.893 kb on - strand at 823.922 kb on + strand at 823.956 kb on + strand at 823.967 kb on + strand at 823.972 kb on + strand at 823.976 kb on - strand at 823.987 kb on + strand at 823.995 kb on - strand at 824.010 kb on - strand at 824.013 kb on + strand at 824.013 kb on + strand at 824.021 kb on - strand at 824.029 kb on - strand at 824.029 kb on - strand at 824.032 kb on + strand at 824.038 kb on + strand at 824.038 kb on + strand at 824.038 kb on + strand at 824.099 kb on + strand, within asnC at 824.106 kb on - strand, within asnC at 824.136 kb on + strand, within asnC at 824.139 kb on + strand, within asnC at 824.147 kb on - strand, within asnC at 824.147 kb on - strand, within asnC at 824.152 kb on - strand, within asnC at 824.161 kb on + strand, within asnC at 824.161 kb on + strand, within asnC at 824.180 kb on - strand, within asnC at 824.181 kb on - strand, within asnC at 824.187 kb on + strand, within asnC at 824.194 kb on + strand, within asnC at 824.195 kb on - strand at 824.195 kb on - strand, within asnC at 824.201 kb on - strand, within asnC at 824.207 kb on - strand, within asnC at 824.216 kb on - strand, within asnC at 824.242 kb on + strand, within asnC at 824.249 kb on - strand, within asnC at 824.310 kb on + strand, within asnC at 824.330 kb on - strand, within asnC at 824.330 kb on - strand, within asnC at 824.384 kb on + strand, within asnC at 824.384 kb on + strand, within asnC at 824.392 kb on - strand, within asnC at 824.460 kb on + strand, within asnC at 824.468 kb on - strand, within asnC at 824.469 kb on + strand, within asnC at 824.489 kb on + strand, within asnC at 824.489 kb on + strand, within asnC at 824.492 kb on - strand, within asnC at 824.497 kb on - strand, within asnC at 824.497 kb on - strand, within asnC at 824.497 kb on - strand, within asnC at 824.497 kb on - strand, within asnC at 824.549 kb on + strand, within asnC at 824.568 kb on + strand, within asnC at 824.576 kb on - strand, within asnC at 824.580 kb on + strand, within asnC at 824.588 kb on - strand, within asnC at 824.604 kb on + strand, within asnC at 824.604 kb on + strand, within asnC at 824.605 kb on + strand, within asnC at 824.612 kb on + strand, within asnC at 824.612 kb on - strand, within asnC at 824.612 kb on - strand, within asnC at 824.612 kb on - strand, within asnC at 824.613 kb on - strand, within asnC at 824.613 kb on - strand at 824.620 kb on - strand, within asnC at 824.620 kb on - strand, within asnC at 824.640 kb on + strand, within asnC at 824.648 kb on - strand, within asnC at 824.648 kb on - strand, within asnC at 824.667 kb on + strand, within asnC at 824.668 kb on - strand, within asnC at 824.675 kb on - strand, within asnC at 824.713 kb on + strand, within asnC at 824.721 kb on - strand, within asnC at 824.721 kb on - strand, within asnC at 824.756 kb on - strand, within asnC at 824.779 kb on + strand, within asnC at 824.788 kb on - strand, within asnC at 824.815 kb on + strand, within asnC at 824.815 kb on + strand, within asnC at 824.823 kb on - strand, within asnC at 824.836 kb on + strand, within asnC at 824.844 kb on - strand, within asnC at 824.863 kb on + strand, within asnC at 824.871 kb on - strand, within asnC at 824.930 kb on - strand, within asnC at 824.966 kb on - strand, within asnC at 824.979 kb on - strand, within asnC at 825.036 kb on + strand, within asnC at 825.036 kb on + strand, within asnC at 825.044 kb on - strand, within asnC at 825.087 kb on - strand, within asnC at 825.088 kb on - strand, within asnC at 825.115 kb on - strand, within asnC at 825.142 kb on - strand, within asnC at 825.142 kb on - strand, within asnC at 825.169 kb on + strand, within asnC at 825.188 kb on + strand, within asnC at 825.188 kb on + strand, within asnC at 825.239 kb on + strand at 825.239 kb on + strand at 825.240 kb on - strand at 825.253 kb on + strand at 825.268 kb on + strand at 825.268 kb on + strand at 825.318 kb on - strand at 825.340 kb on + strand at 825.348 kb on - strand at 825.378 kb on - strand at 825.378 kb on - strand at 825.378 kb on - strand at 825.400 kb on - strand at 825.409 kb on - strand at 825.409 kb on - strand at 825.413 kb on + strand at 825.470 kb on - strand, within Synpcc7942_0831 at 825.521 kb on - strand, within Synpcc7942_0831 at 825.535 kb on + strand, within Synpcc7942_0831 at 825.539 kb on + strand, within Synpcc7942_0831 at 825.545 kb on + strand, within Synpcc7942_0831 at 825.545 kb on + strand, within Synpcc7942_0831 at 825.545 kb on + strand, within Synpcc7942_0831 at 825.553 kb on - strand, within Synpcc7942_0831 at 825.553 kb on - strand, within Synpcc7942_0831 at 825.553 kb on - strand, within Synpcc7942_0831 at 825.553 kb on - strand, within Synpcc7942_0831 at 825.562 kb on + strand, within Synpcc7942_0831 at 825.564 kb on + strand, within Synpcc7942_0831 at 825.564 kb on + strand, within Synpcc7942_0831 at 825.564 kb on + strand, within Synpcc7942_0831 at 825.564 kb on + strand, within Synpcc7942_0831 at 825.570 kb on + strand, within Synpcc7942_0831 at 825.578 kb on - strand, within Synpcc7942_0831 at 825.578 kb on - strand, within Synpcc7942_0831 at 825.689 kb on - strand, within Synpcc7942_0831 at 825.739 kb on + strand, within Synpcc7942_0831 at 825.740 kb on + strand, within Synpcc7942_0831 at 825.747 kb on - strand, within Synpcc7942_0831 at 825.747 kb on - strand, within Synpcc7942_0831 at 825.781 kb on + strand, within Synpcc7942_0831 at 825.802 kb on + strand, within Synpcc7942_0831 at 825.823 kb on + strand, within Synpcc7942_0831 at 825.823 kb on + strand, within Synpcc7942_0831 at 825.831 kb on - strand, within Synpcc7942_0831 at 825.831 kb on - strand, within Synpcc7942_0831 at 825.870 kb on + strand, within Synpcc7942_0831 at 825.897 kb on - strand, within Synpcc7942_0831 at 825.902 kb on + strand, within Synpcc7942_0831 at 825.938 kb on + strand, within Synpcc7942_0831 at 825.938 kb on + strand, within Synpcc7942_0831 at 825.938 kb on + strand, within Synpcc7942_0831 at 825.946 kb on - strand at 825.946 kb on - strand at 825.951 kb on - strand at 825.951 kb on - strand at 825.958 kb on + strand at 825.958 kb on - strand at 825.966 kb on - strand at 825.969 kb on + strand at 825.976 kb on - strand at 826.017 kb on + strand at 826.042 kb on + strand at 826.053 kb on + strand at 826.054 kb on + strand at 826.061 kb on - strand at 826.076 kb on + strand at 826.084 kb on - strand at 826.158 kb on + strand at 826.172 kb on - strand at 826.202 kb on - strand at 826.221 kb on - strand at 826.247 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep2 remove 822,950 - Synpcc7942_0828 0.21 -1.8 822,961 + Synpcc7942_0828 0.24 +1.1 822,968 - Synpcc7942_0828 0.26 -0.5 822,997 + Synpcc7942_0828 0.34 +1.0 823,005 - Synpcc7942_0828 0.36 -0.1 823,059 + Synpcc7942_0828 0.50 +0.3 823,115 - Synpcc7942_0828 0.66 -1.3 823,121 + Synpcc7942_0828 0.67 +0.4 823,129 - Synpcc7942_0828 0.69 -0.6 823,129 - Synpcc7942_0828 0.69 -0.7 823,230 + +0.5 823,231 - -0.1 823,267 + +0.3 823,280 + -0.7 823,288 - +0.0 823,342 + +0.9 823,347 + -0.1 823,347 + +0.3 823,351 + -1.1 823,355 - -0.4 823,383 + -0.4 823,447 - +0.3 823,481 - +0.3 823,481 - +0.1 823,563 + Synpcc7942_0829 0.17 -0.5 823,563 + Synpcc7942_0829 0.17 -0.4 823,585 - -1.2 823,590 - Synpcc7942_0829 0.25 +1.0 823,650 + Synpcc7942_0829 0.43 -0.1 823,658 - Synpcc7942_0829 0.46 +0.5 823,725 - Synpcc7942_0829 0.66 +0.4 823,758 + Synpcc7942_0829 0.76 -1.1 823,766 - Synpcc7942_0829 0.78 -0.8 823,767 - Synpcc7942_0829 0.78 +1.1 823,791 + Synpcc7942_0829 0.86 -0.2 823,804 - Synpcc7942_0829 0.89 +2.2 823,808 - -0.7 823,815 + -0.8 823,823 - +1.0 823,823 - -0.3 823,828 + -1.2 823,837 + -0.0 823,850 + +0.3 823,854 + -1.0 823,883 + -0.0 823,885 + +0.2 823,885 + +1.0 823,885 + +0.0 823,893 - +0.3 823,893 - +0.2 823,893 - -0.4 823,893 - +0.1 823,893 - +0.3 823,893 - -0.4 823,922 + +0.3 823,956 + +3.0 823,967 + +0.4 823,972 + +0.4 823,976 - +0.2 823,987 + +0.5 823,995 - +0.3 824,010 - +0.2 824,013 + +1.1 824,013 + +0.1 824,021 - +0.3 824,029 - -0.0 824,029 - +0.0 824,032 + -0.4 824,038 + +0.4 824,038 + +0.6 824,038 + +0.3 824,099 + asnC Synpcc7942_0830 0.11 -0.0 824,106 - asnC Synpcc7942_0830 0.12 +0.7 824,136 + asnC Synpcc7942_0830 0.14 +0.1 824,139 + asnC Synpcc7942_0830 0.14 +0.1 824,147 - asnC Synpcc7942_0830 0.15 +1.1 824,147 - asnC Synpcc7942_0830 0.15 -0.0 824,152 - asnC Synpcc7942_0830 0.15 +0.2 824,161 + asnC Synpcc7942_0830 0.16 +0.0 824,161 + asnC Synpcc7942_0830 0.16 -1.1 824,180 - asnC Synpcc7942_0830 0.17 +0.5 824,181 - asnC Synpcc7942_0830 0.17 -0.4 824,187 + asnC Synpcc7942_0830 0.18 +0.3 824,194 + asnC Synpcc7942_0830 0.18 +0.1 824,195 - -0.4 824,195 - asnC Synpcc7942_0830 0.18 +0.0 824,201 - asnC Synpcc7942_0830 0.19 -0.3 824,207 - asnC Synpcc7942_0830 0.19 -0.7 824,216 - asnC Synpcc7942_0830 0.20 +0.4 824,242 + asnC Synpcc7942_0830 0.22 +0.4 824,249 - asnC Synpcc7942_0830 0.22 +0.7 824,310 + asnC Synpcc7942_0830 0.26 +0.7 824,330 - asnC Synpcc7942_0830 0.28 -0.7 824,330 - asnC Synpcc7942_0830 0.28 -0.1 824,384 + asnC Synpcc7942_0830 0.32 -0.1 824,384 + asnC Synpcc7942_0830 0.32 -0.6 824,392 - asnC Synpcc7942_0830 0.32 -0.1 824,460 + asnC Synpcc7942_0830 0.37 +0.3 824,468 - asnC Synpcc7942_0830 0.38 +0.8 824,469 + asnC Synpcc7942_0830 0.38 +0.4 824,489 + asnC Synpcc7942_0830 0.39 +0.4 824,489 + asnC Synpcc7942_0830 0.39 +0.5 824,492 - asnC Synpcc7942_0830 0.40 +0.7 824,497 - asnC Synpcc7942_0830 0.40 -0.3 824,497 - asnC Synpcc7942_0830 0.40 -0.2 824,497 - asnC Synpcc7942_0830 0.40 +0.4 824,497 - asnC Synpcc7942_0830 0.40 -0.4 824,549 + asnC Synpcc7942_0830 0.44 -0.1 824,568 + asnC Synpcc7942_0830 0.45 +0.3 824,576 - asnC Synpcc7942_0830 0.46 +2.4 824,580 + asnC Synpcc7942_0830 0.46 +0.1 824,588 - asnC Synpcc7942_0830 0.47 +0.3 824,604 + asnC Synpcc7942_0830 0.48 +0.4 824,604 + asnC Synpcc7942_0830 0.48 -0.6 824,605 + asnC Synpcc7942_0830 0.48 +0.6 824,612 + asnC Synpcc7942_0830 0.48 +0.5 824,612 - asnC Synpcc7942_0830 0.48 +0.2 824,612 - asnC Synpcc7942_0830 0.48 +0.1 824,612 - asnC Synpcc7942_0830 0.48 +0.4 824,613 - asnC Synpcc7942_0830 0.48 +0.9 824,613 - -1.4 824,620 - asnC Synpcc7942_0830 0.49 +0.0 824,620 - asnC Synpcc7942_0830 0.49 +0.4 824,640 + asnC Synpcc7942_0830 0.50 +0.2 824,648 - asnC Synpcc7942_0830 0.51 -0.6 824,648 - asnC Synpcc7942_0830 0.51 +0.1 824,667 + asnC Synpcc7942_0830 0.52 +0.2 824,668 - asnC Synpcc7942_0830 0.52 +2.6 824,675 - asnC Synpcc7942_0830 0.53 +0.2 824,713 + asnC Synpcc7942_0830 0.56 +0.2 824,721 - asnC Synpcc7942_0830 0.56 -0.2 824,721 - asnC Synpcc7942_0830 0.56 -1.0 824,756 - asnC Synpcc7942_0830 0.59 +0.1 824,779 + asnC Synpcc7942_0830 0.60 +0.5 824,788 - asnC Synpcc7942_0830 0.61 -0.1 824,815 + asnC Synpcc7942_0830 0.63 +0.2 824,815 + asnC Synpcc7942_0830 0.63 +0.8 824,823 - asnC Synpcc7942_0830 0.63 -0.3 824,836 + asnC Synpcc7942_0830 0.64 -2.2 824,844 - asnC Synpcc7942_0830 0.65 -0.3 824,863 + asnC Synpcc7942_0830 0.66 -1.4 824,871 - asnC Synpcc7942_0830 0.67 -0.5 824,930 - asnC Synpcc7942_0830 0.71 +0.5 824,966 - asnC Synpcc7942_0830 0.74 +0.4 824,979 - asnC Synpcc7942_0830 0.75 +0.2 825,036 + asnC Synpcc7942_0830 0.79 -0.3 825,036 + asnC Synpcc7942_0830 0.79 +0.4 825,044 - asnC Synpcc7942_0830 0.79 -2.5 825,087 - asnC Synpcc7942_0830 0.82 +0.4 825,088 - asnC Synpcc7942_0830 0.83 +0.6 825,115 - asnC Synpcc7942_0830 0.84 +0.8 825,142 - asnC Synpcc7942_0830 0.86 +0.3 825,142 - asnC Synpcc7942_0830 0.86 +0.0 825,169 + asnC Synpcc7942_0830 0.88 +0.6 825,188 + asnC Synpcc7942_0830 0.90 -0.4 825,188 + asnC Synpcc7942_0830 0.90 -1.0 825,239 + -0.2 825,239 + -0.4 825,240 - -0.1 825,253 + +0.4 825,268 + +0.0 825,268 + +0.5 825,318 - +0.4 825,340 + +0.2 825,348 - +0.2 825,378 - +0.5 825,378 - +0.1 825,378 - +0.1 825,400 - +0.1 825,409 - +0.2 825,409 - +0.5 825,413 + +0.1 825,470 - Synpcc7942_0831 0.11 +1.0 825,521 - Synpcc7942_0831 0.20 -0.2 825,535 + Synpcc7942_0831 0.22 -0.0 825,539 + Synpcc7942_0831 0.23 +0.3 825,545 + Synpcc7942_0831 0.24 -1.4 825,545 + Synpcc7942_0831 0.24 -0.3 825,545 + Synpcc7942_0831 0.24 +0.6 825,553 - Synpcc7942_0831 0.25 -0.3 825,553 - Synpcc7942_0831 0.25 -0.3 825,553 - Synpcc7942_0831 0.25 -1.2 825,553 - Synpcc7942_0831 0.25 +0.6 825,562 + Synpcc7942_0831 0.26 +1.2 825,564 + Synpcc7942_0831 0.27 -0.3 825,564 + Synpcc7942_0831 0.27 -0.1 825,564 + Synpcc7942_0831 0.27 -1.0 825,564 + Synpcc7942_0831 0.27 +0.1 825,570 + Synpcc7942_0831 0.28 -0.7 825,578 - Synpcc7942_0831 0.29 +0.3 825,578 - Synpcc7942_0831 0.29 -0.7 825,689 - Synpcc7942_0831 0.47 +0.0 825,739 + Synpcc7942_0831 0.56 -0.7 825,740 + Synpcc7942_0831 0.56 +0.5 825,747 - Synpcc7942_0831 0.57 -0.4 825,747 - Synpcc7942_0831 0.57 +0.8 825,781 + Synpcc7942_0831 0.63 -0.3 825,802 + Synpcc7942_0831 0.66 -0.2 825,823 + Synpcc7942_0831 0.70 +0.4 825,823 + Synpcc7942_0831 0.70 -0.0 825,831 - Synpcc7942_0831 0.71 +0.1 825,831 - Synpcc7942_0831 0.71 +0.5 825,870 + Synpcc7942_0831 0.77 +1.2 825,897 - Synpcc7942_0831 0.82 +0.2 825,902 + Synpcc7942_0831 0.83 -0.4 825,938 + Synpcc7942_0831 0.89 +0.3 825,938 + Synpcc7942_0831 0.89 +0.2 825,938 + Synpcc7942_0831 0.89 +0.3 825,946 - +0.5 825,946 - +0.5 825,951 - +1.0 825,951 - -0.1 825,958 + -0.0 825,958 - +0.0 825,966 - +0.4 825,969 + +0.6 825,976 - -0.2 826,017 + -0.4 826,042 + -1.0 826,053 + +0.8 826,054 + +0.9 826,061 - -0.3 826,076 + -0.6 826,084 - +0.5 826,158 + +0.3 826,172 - -1.2 826,202 - +1.2 826,221 - +0.4 826,247 - -1.1
Or see this region's nucleotide sequence