Experiment: Light Dark first sampling rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0614 and Synpcc7942_0615 are separated by 160 nucleotides Synpcc7942_0615 and hrcA are separated by 57 nucleotides
Synpcc7942_0614: Synpcc7942_0614 - hypothetical protein, at 603,996 to 605,675
_0614
Synpcc7942_0615: Synpcc7942_0615 - Rhodanese-like, at 605,836 to 606,180
_0615
Synpcc7942_0616: hrcA - heat-inducible transcription repressor, at 606,238 to 607,299
hrcA
Position (kb) 605
606
607 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 605.126 kb on + strand at 605.140 kb on + strand, within Synpcc7942_0614 at 605.720 kb on - strand at 605.781 kb on + strand at 605.781 kb on + strand at 605.781 kb on + strand at 605.781 kb on + strand at 605.789 kb on - strand at 605.806 kb on - strand at 605.811 kb on + strand at 605.819 kb on - strand at 605.832 kb on + strand at 605.840 kb on - strand at 605.840 kb on - strand at 605.860 kb on + strand at 605.867 kb on + strand at 605.875 kb on - strand, within Synpcc7942_0615 at 605.885 kb on - strand, within Synpcc7942_0615 at 605.887 kb on + strand, within Synpcc7942_0615 at 605.887 kb on + strand, within Synpcc7942_0615 at 605.887 kb on + strand, within Synpcc7942_0615 at 605.887 kb on + strand, within Synpcc7942_0615 at 605.912 kb on + strand, within Synpcc7942_0615 at 605.960 kb on + strand, within Synpcc7942_0615 at 605.974 kb on + strand, within Synpcc7942_0615 at 605.982 kb on - strand, within Synpcc7942_0615 at 605.993 kb on + strand, within Synpcc7942_0615 at 606.016 kb on + strand, within Synpcc7942_0615 at 606.024 kb on - strand, within Synpcc7942_0615 at 606.078 kb on - strand, within Synpcc7942_0615 at 606.100 kb on + strand, within Synpcc7942_0615 at 606.102 kb on - strand, within Synpcc7942_0615 at 606.102 kb on - strand, within Synpcc7942_0615 at 606.102 kb on - strand, within Synpcc7942_0615 at 606.109 kb on - strand, within Synpcc7942_0615 at 606.112 kb on + strand, within Synpcc7942_0615 at 606.113 kb on + strand, within Synpcc7942_0615 at 606.166 kb on + strand at 606.173 kb on - strand at 606.174 kb on + strand at 606.209 kb on - strand at 606.213 kb on - strand at 606.232 kb on + strand at 606.323 kb on + strand at 606.323 kb on + strand at 606.323 kb on + strand at 606.323 kb on + strand at 606.326 kb on - strand at 606.331 kb on - strand at 606.331 kb on - strand at 606.342 kb on + strand at 606.357 kb on + strand, within hrcA at 606.382 kb on + strand, within hrcA at 606.383 kb on - strand, within hrcA at 606.390 kb on - strand, within hrcA at 606.399 kb on - strand, within hrcA at 606.406 kb on + strand, within hrcA at 606.406 kb on + strand, within hrcA at 606.454 kb on - strand, within hrcA at 606.465 kb on + strand, within hrcA at 606.465 kb on + strand, within hrcA at 606.491 kb on - strand, within hrcA at 606.497 kb on - strand, within hrcA at 606.502 kb on + strand, within hrcA at 606.510 kb on - strand, within hrcA at 606.517 kb on + strand, within hrcA at 606.530 kb on + strand, within hrcA at 606.538 kb on - strand, within hrcA at 606.563 kb on + strand, within hrcA at 606.565 kb on + strand, within hrcA at 606.573 kb on + strand, within hrcA at 606.573 kb on + strand, within hrcA at 606.583 kb on + strand, within hrcA at 606.591 kb on - strand, within hrcA at 606.669 kb on - strand, within hrcA at 606.684 kb on + strand, within hrcA at 606.697 kb on - strand, within hrcA at 606.719 kb on + strand, within hrcA at 606.726 kb on - strand, within hrcA at 606.773 kb on - strand, within hrcA at 606.826 kb on + strand, within hrcA at 606.833 kb on + strand, within hrcA at 606.834 kb on - strand, within hrcA at 606.846 kb on + strand, within hrcA at 606.854 kb on - strand, within hrcA at 606.864 kb on - strand, within hrcA at 606.864 kb on - strand, within hrcA at 606.871 kb on + strand, within hrcA at 606.915 kb on + strand, within hrcA at 606.943 kb on + strand, within hrcA at 606.952 kb on + strand, within hrcA at 606.959 kb on + strand, within hrcA at 606.969 kb on + strand, within hrcA at 607.030 kb on - strand, within hrcA at 607.057 kb on + strand, within hrcA at 607.073 kb on + strand, within hrcA at 607.121 kb on + strand, within hrcA at 607.133 kb on + strand, within hrcA at 607.141 kb on - strand, within hrcA at 607.141 kb on - strand, within hrcA at 607.144 kb on + strand, within hrcA at 607.156 kb on + strand, within hrcA at 607.168 kb on + strand, within hrcA at 607.168 kb on + strand, within hrcA at 607.178 kb on + strand, within hrcA
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep2 remove 605,126 + +0.0 605,140 + Synpcc7942_0614 0.68 +0.6 605,720 - +0.3 605,781 + +0.6 605,781 + +1.6 605,781 + -0.8 605,781 + -1.5 605,789 - -2.2 605,806 - +0.2 605,811 + -0.2 605,819 - -0.8 605,832 + +0.1 605,840 - +0.2 605,840 - -0.7 605,860 + -0.1 605,867 + -0.7 605,875 - Synpcc7942_0615 0.11 +0.7 605,885 - Synpcc7942_0615 0.14 -0.2 605,887 + Synpcc7942_0615 0.15 +0.4 605,887 + Synpcc7942_0615 0.15 +0.0 605,887 + Synpcc7942_0615 0.15 +0.6 605,887 + Synpcc7942_0615 0.15 +0.0 605,912 + Synpcc7942_0615 0.22 +0.8 605,960 + Synpcc7942_0615 0.36 -0.1 605,974 + Synpcc7942_0615 0.40 +0.2 605,982 - Synpcc7942_0615 0.42 +0.1 605,993 + Synpcc7942_0615 0.46 -0.3 606,016 + Synpcc7942_0615 0.52 +0.8 606,024 - Synpcc7942_0615 0.54 +0.2 606,078 - Synpcc7942_0615 0.70 +0.6 606,100 + Synpcc7942_0615 0.77 -0.3 606,102 - Synpcc7942_0615 0.77 -0.3 606,102 - Synpcc7942_0615 0.77 +0.7 606,102 - Synpcc7942_0615 0.77 -2.4 606,109 - Synpcc7942_0615 0.79 +0.2 606,112 + Synpcc7942_0615 0.80 +0.8 606,113 + Synpcc7942_0615 0.80 +0.5 606,166 + +0.1 606,173 - +0.6 606,174 + -1.0 606,209 - +0.9 606,213 - +0.9 606,232 + -0.5 606,323 + -0.3 606,323 + +1.4 606,323 + +0.5 606,323 + -1.5 606,326 - -0.1 606,331 - +0.6 606,331 - +0.0 606,342 + +0.4 606,357 + hrcA Synpcc7942_0616 0.11 -1.1 606,382 + hrcA Synpcc7942_0616 0.14 -0.8 606,383 - hrcA Synpcc7942_0616 0.14 +0.3 606,390 - hrcA Synpcc7942_0616 0.14 +0.5 606,399 - hrcA Synpcc7942_0616 0.15 +0.2 606,406 + hrcA Synpcc7942_0616 0.16 +0.1 606,406 + hrcA Synpcc7942_0616 0.16 +0.4 606,454 - hrcA Synpcc7942_0616 0.20 +0.3 606,465 + hrcA Synpcc7942_0616 0.21 +0.9 606,465 + hrcA Synpcc7942_0616 0.21 -0.8 606,491 - hrcA Synpcc7942_0616 0.24 -2.1 606,497 - hrcA Synpcc7942_0616 0.24 +0.4 606,502 + hrcA Synpcc7942_0616 0.25 -0.0 606,510 - hrcA Synpcc7942_0616 0.26 +1.6 606,517 + hrcA Synpcc7942_0616 0.26 -1.1 606,530 + hrcA Synpcc7942_0616 0.27 +0.8 606,538 - hrcA Synpcc7942_0616 0.28 +0.3 606,563 + hrcA Synpcc7942_0616 0.31 -0.4 606,565 + hrcA Synpcc7942_0616 0.31 -0.1 606,573 + hrcA Synpcc7942_0616 0.32 +2.9 606,573 + hrcA Synpcc7942_0616 0.32 -0.6 606,583 + hrcA Synpcc7942_0616 0.32 +0.5 606,591 - hrcA Synpcc7942_0616 0.33 -0.3 606,669 - hrcA Synpcc7942_0616 0.41 +0.0 606,684 + hrcA Synpcc7942_0616 0.42 -1.9 606,697 - hrcA Synpcc7942_0616 0.43 -0.7 606,719 + hrcA Synpcc7942_0616 0.45 -0.3 606,726 - hrcA Synpcc7942_0616 0.46 -1.9 606,773 - hrcA Synpcc7942_0616 0.50 +0.5 606,826 + hrcA Synpcc7942_0616 0.55 +1.2 606,833 + hrcA Synpcc7942_0616 0.56 -0.1 606,834 - hrcA Synpcc7942_0616 0.56 -0.4 606,846 + hrcA Synpcc7942_0616 0.57 +0.2 606,854 - hrcA Synpcc7942_0616 0.58 +1.6 606,864 - hrcA Synpcc7942_0616 0.59 +0.2 606,864 - hrcA Synpcc7942_0616 0.59 +0.0 606,871 + hrcA Synpcc7942_0616 0.60 -1.7 606,915 + hrcA Synpcc7942_0616 0.64 -1.2 606,943 + hrcA Synpcc7942_0616 0.66 -0.6 606,952 + hrcA Synpcc7942_0616 0.67 +0.1 606,959 + hrcA Synpcc7942_0616 0.68 -0.7 606,969 + hrcA Synpcc7942_0616 0.69 +0.2 607,030 - hrcA Synpcc7942_0616 0.75 +0.5 607,057 + hrcA Synpcc7942_0616 0.77 -0.1 607,073 + hrcA Synpcc7942_0616 0.79 +0.3 607,121 + hrcA Synpcc7942_0616 0.83 -2.6 607,133 + hrcA Synpcc7942_0616 0.84 +0.3 607,141 - hrcA Synpcc7942_0616 0.85 +0.3 607,141 - hrcA Synpcc7942_0616 0.85 -0.3 607,144 + hrcA Synpcc7942_0616 0.85 -0.3 607,156 + hrcA Synpcc7942_0616 0.86 +0.4 607,168 + hrcA Synpcc7942_0616 0.88 -0.4 607,168 + hrcA Synpcc7942_0616 0.88 +0.2 607,178 + hrcA Synpcc7942_0616 0.89 -0.6
Or see this region's nucleotide sequence