Experiment: Light Dark first sampling rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lipA and Synpcc7942_0543 overlap by 4 nucleotides Synpcc7942_0543 and Synpcc7942_0544 are separated by 78 nucleotides Synpcc7942_0544 and Synpcc7942_0545 overlap by 19 nucleotides Synpcc7942_0545 and nha4 are separated by 40 nucleotides
Synpcc7942_0542: lipA - lipoyl synthase, at 525,360 to 526,253
lipA
Synpcc7942_0543: Synpcc7942_0543 - hypothetical protein, at 526,250 to 526,813
_0543
Synpcc7942_0544: Synpcc7942_0544 - YciI-like protein, at 526,892 to 527,161
_0544
Synpcc7942_0545: Synpcc7942_0545 - hypothetical protein, at 527,143 to 527,835
_0545
Synpcc7942_0546: nha4 - Na+/H+ antiporter, at 527,876 to 530,023
nha4
Position (kb) 526
527
528 Strain fitness (log2 ratio) -2
-1
0
1
2 at 526.266 kb on - strand at 526.268 kb on + strand at 526.328 kb on + strand, within Synpcc7942_0543 at 526.358 kb on + strand, within Synpcc7942_0543 at 526.361 kb on - strand, within Synpcc7942_0543 at 526.361 kb on - strand, within Synpcc7942_0543 at 526.395 kb on + strand, within Synpcc7942_0543 at 526.403 kb on - strand, within Synpcc7942_0543 at 526.418 kb on + strand, within Synpcc7942_0543 at 526.426 kb on - strand, within Synpcc7942_0543 at 526.439 kb on + strand, within Synpcc7942_0543 at 526.439 kb on + strand at 526.498 kb on - strand, within Synpcc7942_0543 at 526.505 kb on + strand, within Synpcc7942_0543 at 526.505 kb on + strand, within Synpcc7942_0543 at 526.518 kb on - strand, within Synpcc7942_0543 at 526.532 kb on - strand, within Synpcc7942_0543 at 526.552 kb on + strand, within Synpcc7942_0543 at 526.565 kb on + strand, within Synpcc7942_0543 at 526.573 kb on - strand, within Synpcc7942_0543 at 526.573 kb on - strand, within Synpcc7942_0543 at 526.573 kb on - strand, within Synpcc7942_0543 at 526.588 kb on - strand, within Synpcc7942_0543 at 526.644 kb on - strand, within Synpcc7942_0543 at 526.646 kb on - strand, within Synpcc7942_0543 at 526.651 kb on - strand, within Synpcc7942_0543 at 526.689 kb on - strand, within Synpcc7942_0543 at 526.689 kb on - strand, within Synpcc7942_0543 at 526.711 kb on + strand, within Synpcc7942_0543 at 526.764 kb on + strand at 526.769 kb on + strand at 526.770 kb on - strand at 526.770 kb on - strand at 526.774 kb on + strand at 526.782 kb on - strand at 526.803 kb on + strand at 526.804 kb on - strand at 526.804 kb on - strand at 526.820 kb on + strand at 526.876 kb on + strand at 526.877 kb on + strand at 526.915 kb on - strand at 526.921 kb on + strand, within Synpcc7942_0544 at 526.982 kb on + strand, within Synpcc7942_0544 at 526.990 kb on - strand, within Synpcc7942_0544 at 526.997 kb on + strand at 526.999 kb on - strand, within Synpcc7942_0544 at 527.000 kb on + strand, within Synpcc7942_0544 at 527.002 kb on + strand, within Synpcc7942_0544 at 527.022 kb on + strand, within Synpcc7942_0544 at 527.022 kb on + strand, within Synpcc7942_0544 at 527.022 kb on + strand, within Synpcc7942_0544 at 527.022 kb on + strand, within Synpcc7942_0544 at 527.022 kb on + strand, within Synpcc7942_0544 at 527.022 kb on + strand, within Synpcc7942_0544 at 527.022 kb on + strand, within Synpcc7942_0544 at 527.027 kb on + strand, within Synpcc7942_0544 at 527.030 kb on - strand, within Synpcc7942_0544 at 527.030 kb on - strand, within Synpcc7942_0544 at 527.035 kb on - strand, within Synpcc7942_0544 at 527.035 kb on - strand, within Synpcc7942_0544 at 527.081 kb on - strand, within Synpcc7942_0544 at 527.081 kb on - strand, within Synpcc7942_0544 at 527.126 kb on + strand, within Synpcc7942_0544 at 527.135 kb on + strand at 527.135 kb on - strand at 527.135 kb on - strand at 527.207 kb on - strand at 527.207 kb on - strand at 527.207 kb on - strand at 527.207 kb on - strand at 527.207 kb on - strand at 527.207 kb on - strand at 527.209 kb on + strand at 527.209 kb on + strand at 527.209 kb on + strand at 527.209 kb on + strand at 527.209 kb on + strand at 527.209 kb on + strand at 527.209 kb on + strand at 527.209 kb on + strand at 527.217 kb on - strand, within Synpcc7942_0545 at 527.217 kb on - strand, within Synpcc7942_0545 at 527.246 kb on - strand, within Synpcc7942_0545 at 527.272 kb on - strand, within Synpcc7942_0545 at 527.282 kb on + strand, within Synpcc7942_0545 at 527.282 kb on + strand, within Synpcc7942_0545 at 527.290 kb on - strand, within Synpcc7942_0545 at 527.297 kb on + strand, within Synpcc7942_0545 at 527.307 kb on + strand, within Synpcc7942_0545 at 527.307 kb on + strand, within Synpcc7942_0545 at 527.307 kb on + strand, within Synpcc7942_0545 at 527.307 kb on + strand, within Synpcc7942_0545 at 527.307 kb on + strand, within Synpcc7942_0545 at 527.307 kb on + strand, within Synpcc7942_0545 at 527.313 kb on + strand, within Synpcc7942_0545 at 527.315 kb on - strand, within Synpcc7942_0545 at 527.315 kb on - strand, within Synpcc7942_0545 at 527.315 kb on - strand, within Synpcc7942_0545 at 527.315 kb on - strand, within Synpcc7942_0545 at 527.330 kb on - strand, within Synpcc7942_0545 at 527.347 kb on + strand, within Synpcc7942_0545 at 527.350 kb on - strand, within Synpcc7942_0545 at 527.355 kb on - strand, within Synpcc7942_0545 at 527.355 kb on - strand, within Synpcc7942_0545 at 527.382 kb on + strand, within Synpcc7942_0545 at 527.398 kb on - strand, within Synpcc7942_0545 at 527.441 kb on - strand, within Synpcc7942_0545 at 527.468 kb on - strand, within Synpcc7942_0545 at 527.516 kb on + strand, within Synpcc7942_0545 at 527.521 kb on + strand, within Synpcc7942_0545 at 527.527 kb on + strand, within Synpcc7942_0545 at 527.529 kb on - strand, within Synpcc7942_0545 at 527.590 kb on + strand, within Synpcc7942_0545 at 527.598 kb on + strand, within Synpcc7942_0545 at 527.598 kb on + strand, within Synpcc7942_0545 at 527.606 kb on - strand, within Synpcc7942_0545 at 527.629 kb on + strand, within Synpcc7942_0545 at 527.637 kb on - strand, within Synpcc7942_0545 at 527.653 kb on - strand, within Synpcc7942_0545 at 527.661 kb on - strand, within Synpcc7942_0545 at 527.716 kb on - strand, within Synpcc7942_0545 at 527.757 kb on - strand, within Synpcc7942_0545 at 527.767 kb on + strand at 527.775 kb on - strand at 527.784 kb on + strand at 527.796 kb on - strand at 527.811 kb on + strand at 527.819 kb on - strand at 527.845 kb on + strand at 527.845 kb on + strand at 527.845 kb on + strand at 527.852 kb on - strand at 527.853 kb on - strand at 527.853 kb on - strand at 527.862 kb on + strand at 527.864 kb on + strand at 527.872 kb on - strand at 527.879 kb on + strand at 527.890 kb on + strand at 527.890 kb on + strand at 527.921 kb on + strand at 527.923 kb on - strand at 527.969 kb on - strand at 527.973 kb on + strand at 528.000 kb on + strand at 528.021 kb on + strand at 528.024 kb on - strand at 528.042 kb on + strand at 528.075 kb on + strand at 528.076 kb on + strand at 528.081 kb on + strand at 528.084 kb on - strand at 528.099 kb on + strand, within nha4 at 528.102 kb on - strand, within nha4 at 528.102 kb on - strand, within nha4 at 528.140 kb on - strand, within nha4 at 528.140 kb on - strand, within nha4 at 528.140 kb on - strand, within nha4 at 528.140 kb on - strand, within nha4 at 528.140 kb on - strand, within nha4 at 528.140 kb on - strand, within nha4
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep2 remove 526,266 - +0.1 526,268 + -0.3 526,328 + Synpcc7942_0543 0.14 +0.2 526,358 + Synpcc7942_0543 0.19 +0.3 526,361 - Synpcc7942_0543 0.20 -0.7 526,361 - Synpcc7942_0543 0.20 -0.9 526,395 + Synpcc7942_0543 0.26 +0.1 526,403 - Synpcc7942_0543 0.27 +0.5 526,418 + Synpcc7942_0543 0.30 -0.3 526,426 - Synpcc7942_0543 0.31 +0.1 526,439 + Synpcc7942_0543 0.34 +0.4 526,439 + -0.2 526,498 - Synpcc7942_0543 0.44 +0.3 526,505 + Synpcc7942_0543 0.45 +0.2 526,505 + Synpcc7942_0543 0.45 +0.3 526,518 - Synpcc7942_0543 0.48 +0.0 526,532 - Synpcc7942_0543 0.50 +0.8 526,552 + Synpcc7942_0543 0.54 +0.2 526,565 + Synpcc7942_0543 0.56 +0.2 526,573 - Synpcc7942_0543 0.57 -0.2 526,573 - Synpcc7942_0543 0.57 -0.5 526,573 - Synpcc7942_0543 0.57 +0.9 526,588 - Synpcc7942_0543 0.60 +0.4 526,644 - Synpcc7942_0543 0.70 +0.4 526,646 - Synpcc7942_0543 0.70 +0.3 526,651 - Synpcc7942_0543 0.71 +0.6 526,689 - Synpcc7942_0543 0.78 +0.8 526,689 - Synpcc7942_0543 0.78 +0.4 526,711 + Synpcc7942_0543 0.82 +0.1 526,764 + +0.0 526,769 + -1.8 526,770 - +0.2 526,770 - -0.4 526,774 + -0.0 526,782 - +0.1 526,803 + +0.2 526,804 - -0.8 526,804 - -0.3 526,820 + -0.5 526,876 + +0.3 526,877 + +0.6 526,915 - -0.2 526,921 + Synpcc7942_0544 0.11 +0.3 526,982 + Synpcc7942_0544 0.33 -0.0 526,990 - Synpcc7942_0544 0.36 -1.1 526,997 + +1.7 526,999 - Synpcc7942_0544 0.40 +0.7 527,000 + Synpcc7942_0544 0.40 +0.9 527,002 + Synpcc7942_0544 0.41 -0.2 527,022 + Synpcc7942_0544 0.48 +0.0 527,022 + Synpcc7942_0544 0.48 +0.8 527,022 + Synpcc7942_0544 0.48 -0.3 527,022 + Synpcc7942_0544 0.48 +0.4 527,022 + Synpcc7942_0544 0.48 -0.2 527,022 + Synpcc7942_0544 0.48 -0.5 527,022 + Synpcc7942_0544 0.48 -0.7 527,027 + Synpcc7942_0544 0.50 +1.1 527,030 - Synpcc7942_0544 0.51 -0.1 527,030 - Synpcc7942_0544 0.51 +0.0 527,035 - Synpcc7942_0544 0.53 -0.1 527,035 - Synpcc7942_0544 0.53 -0.0 527,081 - Synpcc7942_0544 0.70 +0.8 527,081 - Synpcc7942_0544 0.70 +0.4 527,126 + Synpcc7942_0544 0.87 +0.5 527,135 + -0.9 527,135 - +0.2 527,135 - +1.7 527,207 - -0.2 527,207 - +0.9 527,207 - +1.7 527,207 - +0.2 527,207 - +0.7 527,207 - +0.3 527,209 + +0.4 527,209 + -0.5 527,209 + +0.1 527,209 + -0.6 527,209 + +0.6 527,209 + -0.2 527,209 + +0.1 527,209 + -0.0 527,217 - Synpcc7942_0545 0.11 -0.0 527,217 - Synpcc7942_0545 0.11 +0.7 527,246 - Synpcc7942_0545 0.15 -0.3 527,272 - Synpcc7942_0545 0.19 +0.5 527,282 + Synpcc7942_0545 0.20 -1.2 527,282 + Synpcc7942_0545 0.20 -0.6 527,290 - Synpcc7942_0545 0.21 -0.1 527,297 + Synpcc7942_0545 0.22 +0.1 527,307 + Synpcc7942_0545 0.24 -0.5 527,307 + Synpcc7942_0545 0.24 -0.0 527,307 + Synpcc7942_0545 0.24 +0.6 527,307 + Synpcc7942_0545 0.24 -0.6 527,307 + Synpcc7942_0545 0.24 -0.0 527,307 + Synpcc7942_0545 0.24 -0.1 527,313 + Synpcc7942_0545 0.25 -0.7 527,315 - Synpcc7942_0545 0.25 +0.1 527,315 - Synpcc7942_0545 0.25 +0.7 527,315 - Synpcc7942_0545 0.25 +0.8 527,315 - Synpcc7942_0545 0.25 -0.1 527,330 - Synpcc7942_0545 0.27 +0.2 527,347 + Synpcc7942_0545 0.29 +0.9 527,350 - Synpcc7942_0545 0.30 +0.8 527,355 - Synpcc7942_0545 0.31 +0.1 527,355 - Synpcc7942_0545 0.31 -0.3 527,382 + Synpcc7942_0545 0.34 +1.8 527,398 - Synpcc7942_0545 0.37 +0.7 527,441 - Synpcc7942_0545 0.43 -0.7 527,468 - Synpcc7942_0545 0.47 -0.2 527,516 + Synpcc7942_0545 0.54 -0.3 527,521 + Synpcc7942_0545 0.55 +0.7 527,527 + Synpcc7942_0545 0.55 +0.2 527,529 - Synpcc7942_0545 0.56 -1.5 527,590 + Synpcc7942_0545 0.65 +0.0 527,598 + Synpcc7942_0545 0.66 +1.7 527,598 + Synpcc7942_0545 0.66 +0.5 527,606 - Synpcc7942_0545 0.67 -0.7 527,629 + Synpcc7942_0545 0.70 +0.2 527,637 - Synpcc7942_0545 0.71 +0.1 527,653 - Synpcc7942_0545 0.74 +0.4 527,661 - Synpcc7942_0545 0.75 -1.7 527,716 - Synpcc7942_0545 0.83 -0.1 527,757 - Synpcc7942_0545 0.89 +0.5 527,767 + -0.1 527,775 - +0.3 527,784 + -0.9 527,796 - -0.3 527,811 + +0.6 527,819 - +0.3 527,845 + -0.2 527,845 + +0.3 527,845 + +0.1 527,852 - +0.1 527,853 - +0.9 527,853 - -1.7 527,862 + +0.5 527,864 + -0.7 527,872 - +0.4 527,879 + +0.7 527,890 + +0.3 527,890 + +0.5 527,921 + -0.1 527,923 - +0.7 527,969 - -0.9 527,973 + +1.3 528,000 + +0.7 528,021 + -0.5 528,024 - -0.2 528,042 + -1.2 528,075 + +0.3 528,076 + +0.2 528,081 + -0.1 528,084 - +0.4 528,099 + nha4 Synpcc7942_0546 0.10 -0.1 528,102 - nha4 Synpcc7942_0546 0.11 -0.4 528,102 - nha4 Synpcc7942_0546 0.11 +0.5 528,140 - nha4 Synpcc7942_0546 0.12 +0.7 528,140 - nha4 Synpcc7942_0546 0.12 +0.0 528,140 - nha4 Synpcc7942_0546 0.12 +0.1 528,140 - nha4 Synpcc7942_0546 0.12 -0.0 528,140 - nha4 Synpcc7942_0546 0.12 -0.1 528,140 - nha4 Synpcc7942_0546 0.12 -0.0
Or see this region's nucleotide sequence