Experiment: Light Dark first sampling rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0531 and Synpcc7942_0532 are separated by 237 nucleotides Synpcc7942_0532 and Synpcc7942_0533 overlap by 4 nucleotides Synpcc7942_0533 and glmS are separated by 15 nucleotides
Synpcc7942_0531: Synpcc7942_0531 - TPR repeat, at 515,313 to 516,176
_0531
Synpcc7942_0532: Synpcc7942_0532 - hypothetical protein, at 516,414 to 516,767
_0532
Synpcc7942_0533: Synpcc7942_0533 - hypothetical protein, at 516,764 to 517,000
_0533
Synpcc7942_0534: glmS - D-fructose-6-phosphate amidotransferase, at 517,016 to 518,941
glmS
Position (kb) 516
517 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 515.438 kb on - strand, within Synpcc7942_0531 at 515.438 kb on - strand, within Synpcc7942_0531 at 515.682 kb on + strand, within Synpcc7942_0531 at 516.124 kb on - strand at 516.136 kb on - strand at 516.141 kb on - strand at 516.235 kb on + strand at 516.285 kb on - strand at 516.289 kb on - strand at 516.348 kb on - strand at 516.358 kb on - strand at 516.487 kb on + strand, within Synpcc7942_0532 at 516.551 kb on - strand, within Synpcc7942_0532 at 516.619 kb on + strand, within Synpcc7942_0532 at 516.634 kb on + strand, within Synpcc7942_0532 at 516.653 kb on + strand, within Synpcc7942_0532 at 516.666 kb on + strand, within Synpcc7942_0532 at 517.004 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep2 remove 515,438 - Synpcc7942_0531 0.14 -0.1 515,438 - Synpcc7942_0531 0.14 -5.0 515,682 + Synpcc7942_0531 0.43 -2.7 516,124 - -0.6 516,136 - -1.1 516,141 - -2.0 516,235 + +1.7 516,285 - +0.8 516,289 - -0.6 516,348 - -0.5 516,358 - +0.2 516,487 + Synpcc7942_0532 0.21 +1.1 516,551 - Synpcc7942_0532 0.39 +0.5 516,619 + Synpcc7942_0532 0.58 +0.3 516,634 + Synpcc7942_0532 0.62 +1.0 516,653 + Synpcc7942_0532 0.68 +0.1 516,666 + Synpcc7942_0532 0.71 -0.1 517,004 + +0.3
Or see this region's nucleotide sequence