Experiment: Light Dark first sampling rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0435 and Synpcc7942_0436 are separated by 14 nucleotides Synpcc7942_0436 and Synpcc7942_0437 are separated by 312 nucleotides Synpcc7942_0437 and Synpcc7942_0438 overlap by 41 nucleotides Synpcc7942_0438 and chlM are separated by 115 nucleotides
Synpcc7942_0435: Synpcc7942_0435 - hypothetical protein, at 426,075 to 426,830
_0435
Synpcc7942_0436: Synpcc7942_0436 - hypothetical protein, at 426,845 to 427,150
_0436
Synpcc7942_0437: Synpcc7942_0437 - putative glutathione peroxidase, at 427,463 to 428,029
_0437
Synpcc7942_0438: Synpcc7942_0438 - hypothetical protein, at 427,989 to 428,495
_0438
Synpcc7942_0439: chlM - Mg-protoporphyrin IX methyl transferase, at 428,611 to 429,300
chlM
Position (kb) 427
428
429 Strain fitness (log2 ratio) -2
-1
0
1 at 426.498 kb on - strand, within Synpcc7942_0435 at 426.503 kb on + strand, within Synpcc7942_0435 at 426.511 kb on + strand, within Synpcc7942_0435 at 426.518 kb on + strand, within Synpcc7942_0435 at 426.518 kb on + strand, within Synpcc7942_0435 at 426.519 kb on - strand, within Synpcc7942_0435 at 426.519 kb on - strand, within Synpcc7942_0435 at 426.519 kb on - strand, within Synpcc7942_0435 at 426.519 kb on - strand, within Synpcc7942_0435 at 426.523 kb on + strand, within Synpcc7942_0435 at 426.531 kb on - strand, within Synpcc7942_0435 at 426.544 kb on - strand, within Synpcc7942_0435 at 426.549 kb on - strand, within Synpcc7942_0435 at 426.568 kb on + strand, within Synpcc7942_0435 at 426.583 kb on + strand, within Synpcc7942_0435 at 426.591 kb on + strand, within Synpcc7942_0435 at 426.619 kb on + strand, within Synpcc7942_0435 at 426.619 kb on + strand, within Synpcc7942_0435 at 426.629 kb on + strand, within Synpcc7942_0435 at 426.642 kb on - strand, within Synpcc7942_0435 at 426.655 kb on - strand, within Synpcc7942_0435 at 426.656 kb on - strand, within Synpcc7942_0435 at 426.695 kb on + strand, within Synpcc7942_0435 at 426.703 kb on - strand, within Synpcc7942_0435 at 426.703 kb on - strand, within Synpcc7942_0435 at 426.708 kb on + strand, within Synpcc7942_0435 at 426.708 kb on + strand, within Synpcc7942_0435 at 426.716 kb on - strand, within Synpcc7942_0435 at 426.730 kb on + strand, within Synpcc7942_0435 at 426.740 kb on + strand, within Synpcc7942_0435 at 426.809 kb on + strand at 426.824 kb on - strand at 426.839 kb on + strand at 426.857 kb on + strand at 426.903 kb on - strand, within Synpcc7942_0436 at 427.011 kb on - strand, within Synpcc7942_0436 at 427.025 kb on - strand, within Synpcc7942_0436 at 427.027 kb on + strand, within Synpcc7942_0436 at 427.027 kb on + strand, within Synpcc7942_0436 at 427.027 kb on + strand, within Synpcc7942_0436 at 427.189 kb on - strand at 427.189 kb on - strand at 427.189 kb on - strand at 427.214 kb on - strand at 427.359 kb on - strand at 427.497 kb on - strand at 427.679 kb on - strand, within Synpcc7942_0437 at 427.729 kb on + strand, within Synpcc7942_0437 at 427.930 kb on - strand, within Synpcc7942_0437 at 427.952 kb on - strand, within Synpcc7942_0437 at 428.014 kb on + strand at 428.097 kb on + strand, within Synpcc7942_0438 at 428.334 kb on - strand, within Synpcc7942_0438 at 428.460 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep2 remove 426,498 - Synpcc7942_0435 0.56 +0.4 426,503 + Synpcc7942_0435 0.57 -0.2 426,511 + Synpcc7942_0435 0.58 -0.6 426,518 + Synpcc7942_0435 0.59 +0.6 426,518 + Synpcc7942_0435 0.59 +0.5 426,519 - Synpcc7942_0435 0.59 +0.3 426,519 - Synpcc7942_0435 0.59 +0.2 426,519 - Synpcc7942_0435 0.59 -0.4 426,519 - Synpcc7942_0435 0.59 -0.1 426,523 + Synpcc7942_0435 0.59 -0.2 426,531 - Synpcc7942_0435 0.60 -1.0 426,544 - Synpcc7942_0435 0.62 -2.4 426,549 - Synpcc7942_0435 0.63 +0.5 426,568 + Synpcc7942_0435 0.65 +0.2 426,583 + Synpcc7942_0435 0.67 +0.5 426,591 + Synpcc7942_0435 0.68 -0.1 426,619 + Synpcc7942_0435 0.72 -0.2 426,619 + Synpcc7942_0435 0.72 -0.6 426,629 + Synpcc7942_0435 0.73 +0.2 426,642 - Synpcc7942_0435 0.75 +0.1 426,655 - Synpcc7942_0435 0.77 -0.1 426,656 - Synpcc7942_0435 0.77 +0.6 426,695 + Synpcc7942_0435 0.82 +0.2 426,703 - Synpcc7942_0435 0.83 +0.2 426,703 - Synpcc7942_0435 0.83 +0.2 426,708 + Synpcc7942_0435 0.84 -0.1 426,708 + Synpcc7942_0435 0.84 +0.1 426,716 - Synpcc7942_0435 0.85 -0.7 426,730 + Synpcc7942_0435 0.87 +0.0 426,740 + Synpcc7942_0435 0.88 +0.4 426,809 + +0.3 426,824 - +0.2 426,839 + -0.0 426,857 + +0.5 426,903 - Synpcc7942_0436 0.19 +0.5 427,011 - Synpcc7942_0436 0.54 -0.1 427,025 - Synpcc7942_0436 0.59 +0.4 427,027 + Synpcc7942_0436 0.59 +0.4 427,027 + Synpcc7942_0436 0.59 -0.1 427,027 + Synpcc7942_0436 0.59 -0.6 427,189 - -0.7 427,189 - -0.2 427,189 - +0.9 427,214 - +0.5 427,359 - -1.1 427,497 - -0.2 427,679 - Synpcc7942_0437 0.38 +0.0 427,729 + Synpcc7942_0437 0.47 +0.4 427,930 - Synpcc7942_0437 0.82 +0.3 427,952 - Synpcc7942_0437 0.86 +0.1 428,014 + +1.2 428,097 + Synpcc7942_0438 0.21 -0.4 428,334 - Synpcc7942_0438 0.68 +0.1 428,460 - -0.1
Or see this region's nucleotide sequence