Experiment: Light Dark first sampling rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0431 and Synpcc7942_0432 overlap by 11 nucleotides Synpcc7942_0432 and Synpcc7942_0433 are separated by 386 nucleotides
Synpcc7942_0431: Synpcc7942_0431 - hypothetical protein, at 421,289 to 422,557
_0431
Synpcc7942_0432: Synpcc7942_0432 - D-alanyl-D-alanine dipeptidase-like, at 422,547 to 423,245
_0432
Synpcc7942_0433: Synpcc7942_0433 - hypothetical protein, at 423,632 to 424,840
_0433
Position (kb) 422
423
424 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 421.591 kb on - strand, within Synpcc7942_0431 at 421.591 kb on - strand, within Synpcc7942_0431 at 421.654 kb on + strand, within Synpcc7942_0431 at 421.654 kb on - strand, within Synpcc7942_0431 at 421.664 kb on + strand, within Synpcc7942_0431 at 421.718 kb on + strand, within Synpcc7942_0431 at 421.719 kb on + strand, within Synpcc7942_0431 at 421.733 kb on - strand, within Synpcc7942_0431 at 421.733 kb on - strand, within Synpcc7942_0431 at 421.789 kb on + strand, within Synpcc7942_0431 at 421.789 kb on + strand, within Synpcc7942_0431 at 421.795 kb on - strand, within Synpcc7942_0431 at 421.797 kb on - strand, within Synpcc7942_0431 at 421.797 kb on - strand, within Synpcc7942_0431 at 421.797 kb on - strand, within Synpcc7942_0431 at 421.797 kb on - strand, within Synpcc7942_0431 at 421.830 kb on - strand, within Synpcc7942_0431 at 421.866 kb on + strand, within Synpcc7942_0431 at 421.866 kb on - strand, within Synpcc7942_0431 at 421.866 kb on - strand, within Synpcc7942_0431 at 421.876 kb on - strand, within Synpcc7942_0431 at 421.876 kb on - strand, within Synpcc7942_0431 at 421.896 kb on + strand, within Synpcc7942_0431 at 421.897 kb on + strand, within Synpcc7942_0431 at 421.897 kb on + strand, within Synpcc7942_0431 at 421.921 kb on + strand, within Synpcc7942_0431 at 421.921 kb on + strand, within Synpcc7942_0431 at 421.930 kb on - strand, within Synpcc7942_0431 at 421.962 kb on + strand, within Synpcc7942_0431 at 421.963 kb on + strand, within Synpcc7942_0431 at 421.963 kb on + strand, within Synpcc7942_0431 at 421.963 kb on + strand, within Synpcc7942_0431 at 421.963 kb on + strand, within Synpcc7942_0431 at 421.970 kb on - strand, within Synpcc7942_0431 at 421.970 kb on - strand, within Synpcc7942_0431 at 421.970 kb on - strand, within Synpcc7942_0431 at 421.971 kb on - strand, within Synpcc7942_0431 at 421.977 kb on - strand, within Synpcc7942_0431 at 422.005 kb on + strand, within Synpcc7942_0431 at 422.024 kb on + strand, within Synpcc7942_0431 at 422.054 kb on + strand, within Synpcc7942_0431 at 422.070 kb on - strand, within Synpcc7942_0431 at 422.075 kb on - strand, within Synpcc7942_0431 at 422.090 kb on + strand, within Synpcc7942_0431 at 422.098 kb on - strand, within Synpcc7942_0431 at 422.111 kb on - strand, within Synpcc7942_0431 at 422.150 kb on + strand, within Synpcc7942_0431 at 422.203 kb on - strand, within Synpcc7942_0431 at 422.213 kb on + strand, within Synpcc7942_0431 at 422.233 kb on - strand, within Synpcc7942_0431 at 422.237 kb on + strand, within Synpcc7942_0431 at 422.245 kb on - strand, within Synpcc7942_0431 at 422.252 kb on + strand, within Synpcc7942_0431 at 422.258 kb on - strand, within Synpcc7942_0431 at 422.270 kb on + strand, within Synpcc7942_0431 at 422.281 kb on + strand, within Synpcc7942_0431 at 422.286 kb on + strand, within Synpcc7942_0431 at 422.294 kb on + strand, within Synpcc7942_0431 at 422.320 kb on + strand, within Synpcc7942_0431 at 422.328 kb on - strand, within Synpcc7942_0431 at 422.328 kb on - strand, within Synpcc7942_0431 at 422.328 kb on - strand, within Synpcc7942_0431 at 422.330 kb on + strand, within Synpcc7942_0431 at 422.330 kb on + strand, within Synpcc7942_0431 at 422.332 kb on + strand, within Synpcc7942_0431 at 422.338 kb on - strand, within Synpcc7942_0431 at 422.342 kb on - strand, within Synpcc7942_0431 at 422.346 kb on - strand, within Synpcc7942_0431 at 422.358 kb on - strand, within Synpcc7942_0431 at 422.408 kb on + strand, within Synpcc7942_0431 at 422.408 kb on + strand, within Synpcc7942_0431 at 422.408 kb on - strand, within Synpcc7942_0431 at 422.409 kb on - strand, within Synpcc7942_0431 at 422.411 kb on - strand, within Synpcc7942_0431 at 422.413 kb on + strand, within Synpcc7942_0431 at 422.413 kb on + strand, within Synpcc7942_0431 at 422.421 kb on - strand, within Synpcc7942_0431 at 422.472 kb on + strand at 422.490 kb on - strand at 422.538 kb on + strand at 422.637 kb on + strand, within Synpcc7942_0432 at 422.642 kb on + strand, within Synpcc7942_0432 at 422.642 kb on + strand, within Synpcc7942_0432 at 422.642 kb on + strand, within Synpcc7942_0432 at 422.650 kb on - strand, within Synpcc7942_0432 at 422.650 kb on - strand, within Synpcc7942_0432 at 422.652 kb on + strand, within Synpcc7942_0432 at 422.655 kb on - strand, within Synpcc7942_0432 at 422.667 kb on - strand, within Synpcc7942_0432 at 422.683 kb on + strand, within Synpcc7942_0432 at 422.691 kb on - strand, within Synpcc7942_0432 at 422.698 kb on + strand, within Synpcc7942_0432 at 422.711 kb on - strand, within Synpcc7942_0432 at 422.744 kb on + strand, within Synpcc7942_0432 at 422.752 kb on - strand, within Synpcc7942_0432 at 422.752 kb on - strand, within Synpcc7942_0432 at 422.752 kb on - strand, within Synpcc7942_0432 at 422.757 kb on - strand, within Synpcc7942_0432 at 422.813 kb on + strand, within Synpcc7942_0432 at 422.818 kb on + strand, within Synpcc7942_0432 at 422.841 kb on + strand, within Synpcc7942_0432 at 422.841 kb on + strand, within Synpcc7942_0432 at 422.871 kb on - strand, within Synpcc7942_0432 at 422.878 kb on + strand, within Synpcc7942_0432 at 422.886 kb on - strand, within Synpcc7942_0432 at 422.886 kb on - strand, within Synpcc7942_0432 at 422.908 kb on - strand, within Synpcc7942_0432 at 422.908 kb on - strand, within Synpcc7942_0432 at 422.908 kb on - strand, within Synpcc7942_0432 at 422.908 kb on - strand, within Synpcc7942_0432 at 422.908 kb on - strand, within Synpcc7942_0432 at 422.908 kb on - strand, within Synpcc7942_0432 at 422.908 kb on - strand at 422.931 kb on + strand, within Synpcc7942_0432 at 422.992 kb on - strand, within Synpcc7942_0432 at 423.003 kb on + strand, within Synpcc7942_0432 at 423.008 kb on + strand, within Synpcc7942_0432 at 423.044 kb on + strand, within Synpcc7942_0432 at 423.044 kb on + strand, within Synpcc7942_0432 at 423.044 kb on + strand, within Synpcc7942_0432 at 423.083 kb on - strand, within Synpcc7942_0432 at 423.083 kb on - strand, within Synpcc7942_0432 at 423.110 kb on + strand, within Synpcc7942_0432 at 423.110 kb on + strand, within Synpcc7942_0432 at 423.113 kb on + strand, within Synpcc7942_0432 at 423.118 kb on - strand, within Synpcc7942_0432 at 423.126 kb on - strand, within Synpcc7942_0432 at 423.176 kb on + strand at 423.176 kb on + strand at 423.176 kb on + strand at 423.182 kb on + strand at 423.184 kb on - strand at 423.184 kb on - strand at 423.184 kb on - strand at 423.193 kb on + strand at 423.228 kb on + strand at 423.228 kb on + strand at 423.228 kb on + strand at 423.236 kb on - strand at 423.240 kb on + strand at 423.248 kb on - strand at 423.250 kb on + strand at 423.300 kb on + strand at 423.380 kb on + strand at 423.392 kb on + strand at 423.397 kb on + strand at 423.397 kb on + strand at 423.397 kb on + strand at 423.402 kb on + strand at 423.402 kb on + strand at 423.402 kb on + strand at 423.402 kb on + strand at 423.405 kb on - strand at 423.407 kb on - strand at 423.409 kb on + strand at 423.409 kb on + strand at 423.410 kb on - strand at 423.411 kb on + strand at 423.411 kb on + strand at 423.419 kb on - strand at 423.419 kb on - strand at 423.451 kb on + strand at 423.503 kb on + strand at 423.503 kb on + strand at 423.511 kb on - strand at 423.511 kb on - strand at 423.545 kb on + strand at 423.545 kb on + strand at 423.553 kb on - strand at 423.553 kb on - strand at 423.553 kb on - strand at 423.689 kb on + strand at 423.740 kb on + strand at 423.740 kb on + strand at 423.816 kb on - strand, within Synpcc7942_0433 at 423.887 kb on - strand, within Synpcc7942_0433 at 423.887 kb on - strand, within Synpcc7942_0433 at 423.887 kb on - strand, within Synpcc7942_0433 at 423.894 kb on + strand, within Synpcc7942_0433 at 423.894 kb on - strand, within Synpcc7942_0433 at 423.911 kb on - strand, within Synpcc7942_0433 at 423.913 kb on + strand, within Synpcc7942_0433 at 423.913 kb on + strand, within Synpcc7942_0433 at 423.925 kb on + strand, within Synpcc7942_0433 at 423.941 kb on - strand, within Synpcc7942_0433 at 423.951 kb on + strand, within Synpcc7942_0433 at 423.958 kb on + strand, within Synpcc7942_0433 at 423.958 kb on + strand, within Synpcc7942_0433 at 423.961 kb on - strand, within Synpcc7942_0433 at 423.963 kb on + strand, within Synpcc7942_0433 at 423.966 kb on - strand, within Synpcc7942_0433 at 423.986 kb on - strand, within Synpcc7942_0433 at 423.986 kb on - strand, within Synpcc7942_0433 at 423.986 kb on - strand, within Synpcc7942_0433 at 423.986 kb on - strand, within Synpcc7942_0433 at 423.990 kb on - strand, within Synpcc7942_0433 at 423.999 kb on - strand, within Synpcc7942_0433 at 423.999 kb on - strand, within Synpcc7942_0433 at 424.011 kb on + strand, within Synpcc7942_0433 at 424.013 kb on + strand, within Synpcc7942_0433 at 424.016 kb on - strand, within Synpcc7942_0433 at 424.023 kb on + strand, within Synpcc7942_0433 at 424.049 kb on - strand, within Synpcc7942_0433 at 424.061 kb on + strand, within Synpcc7942_0433 at 424.068 kb on - strand, within Synpcc7942_0433 at 424.069 kb on - strand, within Synpcc7942_0433 at 424.084 kb on + strand, within Synpcc7942_0433 at 424.127 kb on + strand, within Synpcc7942_0433 at 424.135 kb on - strand, within Synpcc7942_0433 at 424.137 kb on + strand, within Synpcc7942_0433 at 424.198 kb on + strand, within Synpcc7942_0433 at 424.198 kb on + strand, within Synpcc7942_0433 at 424.206 kb on - strand, within Synpcc7942_0433 at 424.214 kb on - strand, within Synpcc7942_0433 at 424.220 kb on + strand, within Synpcc7942_0433 at 424.228 kb on - strand, within Synpcc7942_0433 at 424.228 kb on - strand, within Synpcc7942_0433
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep2 remove 421,591 - Synpcc7942_0431 0.24 +0.3 421,591 - Synpcc7942_0431 0.24 -0.4 421,654 + Synpcc7942_0431 0.29 +0.5 421,654 - Synpcc7942_0431 0.29 +0.3 421,664 + Synpcc7942_0431 0.30 +0.4 421,718 + Synpcc7942_0431 0.34 -0.3 421,719 + Synpcc7942_0431 0.34 +0.3 421,733 - Synpcc7942_0431 0.35 +1.2 421,733 - Synpcc7942_0431 0.35 +0.1 421,789 + Synpcc7942_0431 0.39 -0.4 421,789 + Synpcc7942_0431 0.39 -0.1 421,795 - Synpcc7942_0431 0.40 +0.2 421,797 - Synpcc7942_0431 0.40 +0.4 421,797 - Synpcc7942_0431 0.40 +0.1 421,797 - Synpcc7942_0431 0.40 -0.4 421,797 - Synpcc7942_0431 0.40 -1.6 421,830 - Synpcc7942_0431 0.43 +0.0 421,866 + Synpcc7942_0431 0.45 +0.6 421,866 - Synpcc7942_0431 0.45 +0.6 421,866 - Synpcc7942_0431 0.45 +0.3 421,876 - Synpcc7942_0431 0.46 -0.2 421,876 - Synpcc7942_0431 0.46 -0.0 421,896 + Synpcc7942_0431 0.48 -1.1 421,897 + Synpcc7942_0431 0.48 +0.3 421,897 + Synpcc7942_0431 0.48 +0.5 421,921 + Synpcc7942_0431 0.50 -0.4 421,921 + Synpcc7942_0431 0.50 -0.1 421,930 - Synpcc7942_0431 0.51 +0.4 421,962 + Synpcc7942_0431 0.53 -0.4 421,963 + Synpcc7942_0431 0.53 +1.9 421,963 + Synpcc7942_0431 0.53 +0.9 421,963 + Synpcc7942_0431 0.53 +0.6 421,963 + Synpcc7942_0431 0.53 -0.5 421,970 - Synpcc7942_0431 0.54 -0.3 421,970 - Synpcc7942_0431 0.54 +0.4 421,970 - Synpcc7942_0431 0.54 +0.2 421,971 - Synpcc7942_0431 0.54 +0.1 421,977 - Synpcc7942_0431 0.54 +0.6 422,005 + Synpcc7942_0431 0.56 +1.0 422,024 + Synpcc7942_0431 0.58 -0.4 422,054 + Synpcc7942_0431 0.60 +0.5 422,070 - Synpcc7942_0431 0.62 +1.4 422,075 - Synpcc7942_0431 0.62 +0.5 422,090 + Synpcc7942_0431 0.63 -1.9 422,098 - Synpcc7942_0431 0.64 -0.1 422,111 - Synpcc7942_0431 0.65 -0.3 422,150 + Synpcc7942_0431 0.68 +0.3 422,203 - Synpcc7942_0431 0.72 -0.1 422,213 + Synpcc7942_0431 0.73 +0.4 422,233 - Synpcc7942_0431 0.74 +1.6 422,237 + Synpcc7942_0431 0.75 -0.2 422,245 - Synpcc7942_0431 0.75 +0.4 422,252 + Synpcc7942_0431 0.76 -0.1 422,258 - Synpcc7942_0431 0.76 -0.5 422,270 + Synpcc7942_0431 0.77 -0.4 422,281 + Synpcc7942_0431 0.78 -1.7 422,286 + Synpcc7942_0431 0.79 -0.3 422,294 + Synpcc7942_0431 0.79 +0.4 422,320 + Synpcc7942_0431 0.81 -1.2 422,328 - Synpcc7942_0431 0.82 +0.7 422,328 - Synpcc7942_0431 0.82 -0.3 422,328 - Synpcc7942_0431 0.82 +0.2 422,330 + Synpcc7942_0431 0.82 +0.9 422,330 + Synpcc7942_0431 0.82 +0.6 422,332 + Synpcc7942_0431 0.82 -0.3 422,338 - Synpcc7942_0431 0.83 +0.0 422,342 - Synpcc7942_0431 0.83 -0.3 422,346 - Synpcc7942_0431 0.83 +0.5 422,358 - Synpcc7942_0431 0.84 -0.3 422,408 + Synpcc7942_0431 0.88 +0.7 422,408 + Synpcc7942_0431 0.88 -0.4 422,408 - Synpcc7942_0431 0.88 -0.2 422,409 - Synpcc7942_0431 0.88 +0.5 422,411 - Synpcc7942_0431 0.88 +0.3 422,413 + Synpcc7942_0431 0.89 -0.8 422,413 + Synpcc7942_0431 0.89 -0.2 422,421 - Synpcc7942_0431 0.89 +0.8 422,472 + -0.3 422,490 - +1.1 422,538 + +0.5 422,637 + Synpcc7942_0432 0.13 +0.7 422,642 + Synpcc7942_0432 0.14 +0.5 422,642 + Synpcc7942_0432 0.14 +0.5 422,642 + Synpcc7942_0432 0.14 +0.1 422,650 - Synpcc7942_0432 0.15 +0.6 422,650 - Synpcc7942_0432 0.15 +0.1 422,652 + Synpcc7942_0432 0.15 -1.9 422,655 - Synpcc7942_0432 0.15 +0.2 422,667 - Synpcc7942_0432 0.17 -0.3 422,683 + Synpcc7942_0432 0.19 -0.5 422,691 - Synpcc7942_0432 0.21 -0.3 422,698 + Synpcc7942_0432 0.22 +0.7 422,711 - Synpcc7942_0432 0.23 +0.2 422,744 + Synpcc7942_0432 0.28 +0.2 422,752 - Synpcc7942_0432 0.29 +0.1 422,752 - Synpcc7942_0432 0.29 +0.2 422,752 - Synpcc7942_0432 0.29 +0.3 422,757 - Synpcc7942_0432 0.30 -0.3 422,813 + Synpcc7942_0432 0.38 -0.9 422,818 + Synpcc7942_0432 0.39 +0.2 422,841 + Synpcc7942_0432 0.42 +0.7 422,841 + Synpcc7942_0432 0.42 +0.8 422,871 - Synpcc7942_0432 0.46 +0.2 422,878 + Synpcc7942_0432 0.47 +0.7 422,886 - Synpcc7942_0432 0.48 -0.1 422,886 - Synpcc7942_0432 0.48 +0.1 422,908 - Synpcc7942_0432 0.52 -0.5 422,908 - Synpcc7942_0432 0.52 +0.4 422,908 - Synpcc7942_0432 0.52 +0.8 422,908 - Synpcc7942_0432 0.52 +0.5 422,908 - Synpcc7942_0432 0.52 +0.5 422,908 - Synpcc7942_0432 0.52 -0.3 422,908 - +0.0 422,931 + Synpcc7942_0432 0.55 -0.9 422,992 - Synpcc7942_0432 0.64 +0.4 423,003 + Synpcc7942_0432 0.65 +0.5 423,008 + Synpcc7942_0432 0.66 +0.7 423,044 + Synpcc7942_0432 0.71 +0.8 423,044 + Synpcc7942_0432 0.71 +1.8 423,044 + Synpcc7942_0432 0.71 -0.1 423,083 - Synpcc7942_0432 0.77 +0.5 423,083 - Synpcc7942_0432 0.77 +0.0 423,110 + Synpcc7942_0432 0.81 +1.0 423,110 + Synpcc7942_0432 0.81 -0.0 423,113 + Synpcc7942_0432 0.81 +0.2 423,118 - Synpcc7942_0432 0.82 +0.8 423,126 - Synpcc7942_0432 0.83 +1.1 423,176 + +0.5 423,176 + -0.3 423,176 + +0.1 423,182 + +0.8 423,184 - +0.2 423,184 - +0.7 423,184 - +1.7 423,193 + +0.6 423,228 + +0.2 423,228 + +0.0 423,228 + +0.4 423,236 - -0.5 423,240 + -0.0 423,248 - +0.9 423,250 + -1.0 423,300 + -0.5 423,380 + -0.1 423,392 + -0.1 423,397 + -0.2 423,397 + -0.0 423,397 + +0.5 423,402 + -0.4 423,402 + +0.2 423,402 + -0.0 423,402 + -1.9 423,405 - -0.1 423,407 - -2.8 423,409 + -0.7 423,409 + +0.2 423,410 - -1.9 423,411 + +0.8 423,411 + +0.2 423,419 - -0.5 423,419 - +0.8 423,451 + +0.5 423,503 + +0.1 423,503 + -0.3 423,511 - +0.8 423,511 - +0.7 423,545 + -0.0 423,545 + +0.6 423,553 - +0.1 423,553 - -0.5 423,553 - -0.5 423,689 + +0.5 423,740 + -0.0 423,740 + -1.9 423,816 - Synpcc7942_0433 0.15 -0.2 423,887 - Synpcc7942_0433 0.21 -0.4 423,887 - Synpcc7942_0433 0.21 +0.5 423,887 - Synpcc7942_0433 0.21 -1.3 423,894 + Synpcc7942_0433 0.22 +0.4 423,894 - Synpcc7942_0433 0.22 -0.5 423,911 - Synpcc7942_0433 0.23 +0.5 423,913 + Synpcc7942_0433 0.23 +0.2 423,913 + Synpcc7942_0433 0.23 +0.3 423,925 + Synpcc7942_0433 0.24 -0.2 423,941 - Synpcc7942_0433 0.26 -0.3 423,951 + Synpcc7942_0433 0.26 -0.8 423,958 + Synpcc7942_0433 0.27 +0.3 423,958 + Synpcc7942_0433 0.27 -0.0 423,961 - Synpcc7942_0433 0.27 +0.3 423,963 + Synpcc7942_0433 0.27 +0.6 423,966 - Synpcc7942_0433 0.28 -0.4 423,986 - Synpcc7942_0433 0.29 +0.0 423,986 - Synpcc7942_0433 0.29 -1.7 423,986 - Synpcc7942_0433 0.29 +1.8 423,986 - Synpcc7942_0433 0.29 +0.3 423,990 - Synpcc7942_0433 0.30 +0.1 423,999 - Synpcc7942_0433 0.30 +0.4 423,999 - Synpcc7942_0433 0.30 +0.5 424,011 + Synpcc7942_0433 0.31 -0.2 424,013 + Synpcc7942_0433 0.32 -0.1 424,016 - Synpcc7942_0433 0.32 +2.5 424,023 + Synpcc7942_0433 0.32 -1.2 424,049 - Synpcc7942_0433 0.34 +0.7 424,061 + Synpcc7942_0433 0.35 +0.4 424,068 - Synpcc7942_0433 0.36 +0.7 424,069 - Synpcc7942_0433 0.36 -0.0 424,084 + Synpcc7942_0433 0.37 +0.9 424,127 + Synpcc7942_0433 0.41 +1.1 424,135 - Synpcc7942_0433 0.42 -1.7 424,137 + Synpcc7942_0433 0.42 +0.5 424,198 + Synpcc7942_0433 0.47 -0.4 424,198 + Synpcc7942_0433 0.47 +0.1 424,206 - Synpcc7942_0433 0.47 -0.3 424,214 - Synpcc7942_0433 0.48 +0.8 424,220 + Synpcc7942_0433 0.49 -1.2 424,228 - Synpcc7942_0433 0.49 -0.2 424,228 - Synpcc7942_0433 0.49 +0.1
Or see this region's nucleotide sequence