Experiment: Light Dark first sampling rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0380 and Synpcc7942_0381 are separated by 203 nucleotides Synpcc7942_0381 and Synpcc7942_0382 are separated by 109 nucleotides Synpcc7942_0382 and Synpcc7942_0383 are separated by 39 nucleotides Synpcc7942_0383 and Synpcc7942_0384 are separated by 78 nucleotides Synpcc7942_0384 and chlP are separated by 83 nucleotides
Synpcc7942_0380: Synpcc7942_0380 - hypothetical protein, at 373,785 to 374,828
_0380
Synpcc7942_0381: Synpcc7942_0381 - hypothetical protein, at 375,032 to 375,346
_0381
Synpcc7942_0382: Synpcc7942_0382 - hypothetical protein, at 375,456 to 375,722
_0382
Synpcc7942_0383: Synpcc7942_0383 - hypothetical protein, at 375,762 to 376,448
_0383
Synpcc7942_0384: Synpcc7942_0384 - hypothetical protein, at 376,527 to 377,237
_0384
Synpcc7942_0385: chlP - geranylgeranyl reductase, at 377,321 to 378,694
chlP
Position (kb) 375
376
377 Strain fitness (log2 ratio) -2
-1
0
1
2 at 374.812 kb on + strand at 374.832 kb on + strand at 374.850 kb on - strand at 374.924 kb on + strand at 374.928 kb on + strand at 374.969 kb on - strand at 374.970 kb on + strand at 374.978 kb on + strand at 374.990 kb on + strand at 375.025 kb on + strand at 375.030 kb on + strand at 375.030 kb on + strand at 375.056 kb on - strand at 375.083 kb on + strand, within Synpcc7942_0381 at 375.091 kb on - strand, within Synpcc7942_0381 at 375.109 kb on + strand, within Synpcc7942_0381 at 375.115 kb on + strand, within Synpcc7942_0381 at 375.117 kb on - strand, within Synpcc7942_0381 at 375.123 kb on - strand, within Synpcc7942_0381 at 375.137 kb on + strand, within Synpcc7942_0381 at 375.203 kb on - strand, within Synpcc7942_0381 at 375.222 kb on + strand, within Synpcc7942_0381 at 375.247 kb on + strand, within Synpcc7942_0381 at 375.251 kb on + strand, within Synpcc7942_0381 at 375.259 kb on - strand, within Synpcc7942_0381 at 375.262 kb on + strand, within Synpcc7942_0381 at 375.270 kb on - strand, within Synpcc7942_0381 at 375.309 kb on - strand, within Synpcc7942_0381 at 375.309 kb on - strand, within Synpcc7942_0381 at 375.318 kb on + strand at 375.318 kb on + strand at 375.318 kb on + strand at 375.318 kb on + strand at 375.326 kb on - strand at 375.326 kb on - strand at 375.352 kb on - strand at 375.354 kb on + strand at 375.378 kb on + strand at 375.383 kb on + strand at 375.386 kb on - strand at 375.386 kb on - strand at 375.388 kb on - strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.393 kb on + strand at 375.401 kb on - strand at 375.401 kb on - strand at 375.401 kb on - strand at 375.401 kb on - strand at 375.401 kb on - strand at 375.401 kb on - strand at 375.401 kb on - strand at 375.529 kb on + strand, within Synpcc7942_0382 at 375.557 kb on - strand, within Synpcc7942_0382 at 375.584 kb on - strand, within Synpcc7942_0382 at 375.770 kb on + strand at 375.770 kb on + strand at 375.880 kb on + strand, within Synpcc7942_0383 at 375.899 kb on - strand, within Synpcc7942_0383 at 375.954 kb on + strand, within Synpcc7942_0383 at 375.962 kb on - strand, within Synpcc7942_0383 at 375.971 kb on + strand, within Synpcc7942_0383 at 375.979 kb on - strand, within Synpcc7942_0383 at 376.064 kb on + strand, within Synpcc7942_0383 at 376.064 kb on + strand, within Synpcc7942_0383 at 376.064 kb on + strand, within Synpcc7942_0383 at 376.072 kb on - strand, within Synpcc7942_0383 at 376.085 kb on - strand, within Synpcc7942_0383 at 376.244 kb on + strand, within Synpcc7942_0383 at 376.254 kb on - strand, within Synpcc7942_0383 at 376.337 kb on + strand at 376.614 kb on + strand, within Synpcc7942_0384 at 376.627 kb on - strand, within Synpcc7942_0384 at 376.633 kb on - strand, within Synpcc7942_0384 at 376.653 kb on + strand, within Synpcc7942_0384 at 376.658 kb on + strand, within Synpcc7942_0384 at 376.661 kb on - strand, within Synpcc7942_0384 at 376.661 kb on - strand, within Synpcc7942_0384 at 376.661 kb on - strand, within Synpcc7942_0384 at 376.661 kb on - strand, within Synpcc7942_0384 at 376.661 kb on - strand, within Synpcc7942_0384 at 376.661 kb on - strand at 376.666 kb on - strand, within Synpcc7942_0384 at 376.722 kb on + strand, within Synpcc7942_0384 at 376.730 kb on - strand, within Synpcc7942_0384 at 376.743 kb on - strand, within Synpcc7942_0384 at 376.798 kb on - strand, within Synpcc7942_0384 at 376.834 kb on + strand, within Synpcc7942_0384 at 376.882 kb on - strand, within Synpcc7942_0384 at 376.898 kb on - strand, within Synpcc7942_0384 at 376.900 kb on + strand, within Synpcc7942_0384 at 376.900 kb on + strand, within Synpcc7942_0384 at 376.926 kb on + strand, within Synpcc7942_0384 at 376.931 kb on + strand at 376.934 kb on - strand, within Synpcc7942_0384 at 376.934 kb on - strand, within Synpcc7942_0384 at 376.947 kb on - strand, within Synpcc7942_0384 at 376.957 kb on + strand, within Synpcc7942_0384 at 377.050 kb on + strand, within Synpcc7942_0384 at 377.050 kb on + strand, within Synpcc7942_0384 at 377.055 kb on + strand, within Synpcc7942_0384 at 377.055 kb on + strand, within Synpcc7942_0384 at 377.055 kb on + strand, within Synpcc7942_0384 at 377.101 kb on - strand, within Synpcc7942_0384 at 377.103 kb on + strand, within Synpcc7942_0384 at 377.109 kb on + strand, within Synpcc7942_0384 at 377.158 kb on - strand, within Synpcc7942_0384 at 377.181 kb on + strand at 377.220 kb on - strand at 377.240 kb on - strand at 377.241 kb on - strand at 377.243 kb on - strand at 377.264 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep2 remove 374,812 + +0.1 374,832 + -0.1 374,850 - +1.0 374,924 + -0.0 374,928 + +0.0 374,969 - +0.3 374,970 + +0.1 374,978 + -0.3 374,990 + +0.4 375,025 + -0.2 375,030 + -0.2 375,030 + +0.3 375,056 - -0.0 375,083 + Synpcc7942_0381 0.16 -0.1 375,091 - Synpcc7942_0381 0.19 +0.3 375,109 + Synpcc7942_0381 0.24 -0.4 375,115 + Synpcc7942_0381 0.26 -0.6 375,117 - Synpcc7942_0381 0.27 -2.1 375,123 - Synpcc7942_0381 0.29 -0.3 375,137 + Synpcc7942_0381 0.33 -1.0 375,203 - Synpcc7942_0381 0.54 +0.4 375,222 + Synpcc7942_0381 0.60 -0.1 375,247 + Synpcc7942_0381 0.68 +0.5 375,251 + Synpcc7942_0381 0.70 -0.3 375,259 - Synpcc7942_0381 0.72 +0.5 375,262 + Synpcc7942_0381 0.73 +0.3 375,270 - Synpcc7942_0381 0.76 +0.4 375,309 - Synpcc7942_0381 0.88 +0.1 375,309 - Synpcc7942_0381 0.88 -0.4 375,318 + +0.3 375,318 + -0.1 375,318 + +0.6 375,318 + -0.6 375,326 - -0.1 375,326 - -0.5 375,352 - -0.7 375,354 + -0.1 375,378 + -1.0 375,383 + +0.0 375,386 - +0.1 375,386 - +0.3 375,388 - -0.3 375,393 + -0.7 375,393 + -0.2 375,393 + -0.7 375,393 + +0.1 375,393 + -0.3 375,393 + +0.9 375,393 + -1.0 375,393 + +0.2 375,393 + +0.3 375,401 - +0.1 375,401 - +1.0 375,401 - -0.6 375,401 - -0.0 375,401 - -0.2 375,401 - -0.1 375,401 - -0.2 375,529 + Synpcc7942_0382 0.27 +0.1 375,557 - Synpcc7942_0382 0.38 +1.0 375,584 - Synpcc7942_0382 0.48 +0.7 375,770 + +0.8 375,770 + -0.1 375,880 + Synpcc7942_0383 0.17 +0.1 375,899 - Synpcc7942_0383 0.20 -0.4 375,954 + Synpcc7942_0383 0.28 +0.2 375,962 - Synpcc7942_0383 0.29 -0.4 375,971 + Synpcc7942_0383 0.30 +2.2 375,979 - Synpcc7942_0383 0.32 +0.4 376,064 + Synpcc7942_0383 0.44 -0.0 376,064 + Synpcc7942_0383 0.44 -0.1 376,064 + Synpcc7942_0383 0.44 +0.2 376,072 - Synpcc7942_0383 0.45 +1.6 376,085 - Synpcc7942_0383 0.47 +0.4 376,244 + Synpcc7942_0383 0.70 +0.1 376,254 - Synpcc7942_0383 0.72 +0.4 376,337 + +0.4 376,614 + Synpcc7942_0384 0.12 +0.6 376,627 - Synpcc7942_0384 0.14 -0.6 376,633 - Synpcc7942_0384 0.15 -1.4 376,653 + Synpcc7942_0384 0.18 -1.0 376,658 + Synpcc7942_0384 0.18 -1.7 376,661 - Synpcc7942_0384 0.19 +0.2 376,661 - Synpcc7942_0384 0.19 +1.1 376,661 - Synpcc7942_0384 0.19 -0.1 376,661 - Synpcc7942_0384 0.19 +0.9 376,661 - Synpcc7942_0384 0.19 -0.0 376,661 - +0.6 376,666 - Synpcc7942_0384 0.20 +0.1 376,722 + Synpcc7942_0384 0.27 +0.3 376,730 - Synpcc7942_0384 0.29 -0.1 376,743 - Synpcc7942_0384 0.30 -0.4 376,798 - Synpcc7942_0384 0.38 +0.2 376,834 + Synpcc7942_0384 0.43 -0.9 376,882 - Synpcc7942_0384 0.50 -0.2 376,898 - Synpcc7942_0384 0.52 -0.4 376,900 + Synpcc7942_0384 0.52 +0.4 376,900 + Synpcc7942_0384 0.52 -0.4 376,926 + Synpcc7942_0384 0.56 -0.1 376,931 + -0.4 376,934 - Synpcc7942_0384 0.57 -0.1 376,934 - Synpcc7942_0384 0.57 +0.5 376,947 - Synpcc7942_0384 0.59 +0.1 376,957 + Synpcc7942_0384 0.60 -0.5 377,050 + Synpcc7942_0384 0.74 -1.9 377,050 + Synpcc7942_0384 0.74 +0.6 377,055 + Synpcc7942_0384 0.74 +1.0 377,055 + Synpcc7942_0384 0.74 +0.4 377,055 + Synpcc7942_0384 0.74 -0.2 377,101 - Synpcc7942_0384 0.81 -0.5 377,103 + Synpcc7942_0384 0.81 +0.2 377,109 + Synpcc7942_0384 0.82 -0.3 377,158 - Synpcc7942_0384 0.89 +0.5 377,181 + +0.1 377,220 - -0.0 377,240 - -0.5 377,241 - -0.1 377,243 - +0.2 377,264 + +0.4
Or see this region's nucleotide sequence