Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0314

Experiment: Light Dark first sampling rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0312 and Synpcc7942_0313 are separated by 53 nucleotidesSynpcc7942_0313 and Synpcc7942_0314 are separated by 128 nucleotidesSynpcc7942_0314 and purB are separated by 46 nucleotides Synpcc7942_0312: Synpcc7942_0312 - hypothetical protein, at 311,280 to 311,708 _0312 Synpcc7942_0313: Synpcc7942_0313 - hypothetical protein, at 311,762 to 312,274 _0313 Synpcc7942_0314: Synpcc7942_0314 - succinate dehydrogenase subunit C, at 312,403 to 313,032 _0314 Synpcc7942_0315: purB - adenylosuccinate lyase, at 313,079 to 314,374 purB Position (kb) 312 313 314Strain fitness (log2 ratio) -2 -1 0 1at 311.416 kb on - strand, within Synpcc7942_0312at 311.429 kb on - strand, within Synpcc7942_0312at 311.438 kb on + strand, within Synpcc7942_0312at 311.438 kb on + strand, within Synpcc7942_0312at 311.471 kb on + strand, within Synpcc7942_0312at 311.471 kb on + strand, within Synpcc7942_0312at 311.479 kb on - strand, within Synpcc7942_0312at 311.492 kb on - strand, within Synpcc7942_0312at 311.498 kb on - strand, within Synpcc7942_0312at 311.513 kb on - strand, within Synpcc7942_0312at 311.519 kb on + strand, within Synpcc7942_0312at 311.527 kb on - strand, within Synpcc7942_0312at 311.552 kb on + strand, within Synpcc7942_0312at 311.571 kb on + strand, within Synpcc7942_0312at 311.588 kb on + strand, within Synpcc7942_0312at 311.611 kb on + strand, within Synpcc7942_0312at 311.621 kb on + strand, within Synpcc7942_0312at 311.661 kb on + strand, within Synpcc7942_0312at 311.667 kb on + strandat 311.718 kb on + strandat 311.719 kb on - strandat 311.726 kb on + strandat 311.733 kb on + strandat 311.741 kb on - strandat 311.763 kb on - strandat 311.795 kb on - strandat 311.811 kb on + strandat 311.839 kb on + strand, within Synpcc7942_0313at 311.839 kb on + strand, within Synpcc7942_0313at 311.842 kb on - strand, within Synpcc7942_0313at 311.850 kb on + strand, within Synpcc7942_0313at 311.924 kb on - strand, within Synpcc7942_0313at 311.974 kb on - strand, within Synpcc7942_0313at 311.981 kb on + strand, within Synpcc7942_0313at 311.985 kb on + strand, within Synpcc7942_0313at 312.019 kb on - strand, within Synpcc7942_0313at 312.036 kb on + strand, within Synpcc7942_0313at 312.036 kb on + strand, within Synpcc7942_0313at 312.044 kb on - strand, within Synpcc7942_0313at 312.049 kb on - strand, within Synpcc7942_0313at 312.054 kb on - strand, within Synpcc7942_0313at 312.060 kb on - strand, within Synpcc7942_0313at 312.076 kb on + strand, within Synpcc7942_0313at 312.081 kb on + strand, within Synpcc7942_0313at 312.084 kb on - strand, within Synpcc7942_0313at 312.133 kb on + strand, within Synpcc7942_0313at 312.133 kb on + strand, within Synpcc7942_0313at 312.133 kb on + strand, within Synpcc7942_0313at 312.133 kb on + strand, within Synpcc7942_0313at 312.141 kb on - strand, within Synpcc7942_0313at 312.141 kb on - strand, within Synpcc7942_0313at 312.141 kb on - strand, within Synpcc7942_0313at 312.141 kb on - strand, within Synpcc7942_0313at 312.141 kb on - strand, within Synpcc7942_0313at 312.141 kb on - strand, within Synpcc7942_0313at 312.156 kb on - strand, within Synpcc7942_0313at 312.173 kb on + strand, within Synpcc7942_0313at 312.256 kb on - strandat 312.506 kb on + strand, within Synpcc7942_0314at 312.514 kb on - strand, within Synpcc7942_0314at 312.516 kb on + strand, within Synpcc7942_0314at 312.516 kb on + strand, within Synpcc7942_0314at 312.516 kb on + strand, within Synpcc7942_0314at 312.516 kb on + strand, within Synpcc7942_0314at 312.516 kb on + strand, within Synpcc7942_0314at 312.516 kb on + strand, within Synpcc7942_0314at 312.519 kb on - strand, within Synpcc7942_0314at 312.519 kb on - strand, within Synpcc7942_0314at 312.521 kb on + strandat 312.524 kb on - strandat 312.536 kb on - strand, within Synpcc7942_0314at 312.544 kb on - strand, within Synpcc7942_0314at 312.584 kb on + strand, within Synpcc7942_0314at 312.607 kb on + strand, within Synpcc7942_0314at 312.615 kb on - strand, within Synpcc7942_0314at 312.615 kb on - strand, within Synpcc7942_0314at 312.617 kb on - strand, within Synpcc7942_0314at 312.630 kb on + strand, within Synpcc7942_0314at 312.638 kb on - strand, within Synpcc7942_0314at 312.638 kb on - strand, within Synpcc7942_0314at 312.663 kb on + strand, within Synpcc7942_0314at 312.778 kb on + strand, within Synpcc7942_0314at 312.778 kb on + strand, within Synpcc7942_0314at 312.780 kb on - strand, within Synpcc7942_0314at 312.786 kb on - strand, within Synpcc7942_0314at 312.788 kb on - strand, within Synpcc7942_0314at 312.801 kb on - strand, within Synpcc7942_0314at 312.825 kb on - strand, within Synpcc7942_0314at 312.862 kb on + strand, within Synpcc7942_0314at 312.887 kb on + strand, within Synpcc7942_0314at 312.888 kb on + strand, within Synpcc7942_0314at 312.895 kb on - strand, within Synpcc7942_0314at 312.895 kb on - strand, within Synpcc7942_0314at 312.897 kb on - strand, within Synpcc7942_0314at 312.919 kb on + strand, within Synpcc7942_0314at 312.921 kb on + strand, within Synpcc7942_0314at 312.921 kb on + strand, within Synpcc7942_0314at 312.929 kb on - strand, within Synpcc7942_0314at 312.929 kb on - strand, within Synpcc7942_0314at 313.009 kb on + strandat 313.031 kb on + strandat 313.042 kb on + strandat 313.050 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Light Dark first sampling rep2
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311,416 - Synpcc7942_0312 0.32 -0.7
311,429 - Synpcc7942_0312 0.35 +0.3
311,438 + Synpcc7942_0312 0.37 -1.6
311,438 + Synpcc7942_0312 0.37 +1.1
311,471 + Synpcc7942_0312 0.45 -0.2
311,471 + Synpcc7942_0312 0.45 +0.2
311,479 - Synpcc7942_0312 0.46 -0.4
311,492 - Synpcc7942_0312 0.49 -0.4
311,498 - Synpcc7942_0312 0.51 +0.3
311,513 - Synpcc7942_0312 0.54 -0.4
311,519 + Synpcc7942_0312 0.56 -0.1
311,527 - Synpcc7942_0312 0.58 -0.2
311,552 + Synpcc7942_0312 0.63 +1.0
311,571 + Synpcc7942_0312 0.68 -1.0
311,588 + Synpcc7942_0312 0.72 +0.1
311,611 + Synpcc7942_0312 0.77 +0.6
311,621 + Synpcc7942_0312 0.79 +0.3
311,661 + Synpcc7942_0312 0.89 -0.5
311,667 + +0.0
311,718 + +0.5
311,719 - -0.3
311,726 + +1.0
311,733 + -0.0
311,741 - -0.0
311,763 - +0.6
311,795 - +1.0
311,811 + +1.2
311,839 + Synpcc7942_0313 0.15 +0.3
311,839 + Synpcc7942_0313 0.15 +0.1
311,842 - Synpcc7942_0313 0.16 +0.3
311,850 + Synpcc7942_0313 0.17 +0.4
311,924 - Synpcc7942_0313 0.32 -0.1
311,974 - Synpcc7942_0313 0.41 +0.1
311,981 + Synpcc7942_0313 0.43 -0.8
311,985 + Synpcc7942_0313 0.43 +0.8
312,019 - Synpcc7942_0313 0.50 +0.2
312,036 + Synpcc7942_0313 0.53 +0.0
312,036 + Synpcc7942_0313 0.53 -0.1
312,044 - Synpcc7942_0313 0.55 -0.0
312,049 - Synpcc7942_0313 0.56 -0.4
312,054 - Synpcc7942_0313 0.57 +0.3
312,060 - Synpcc7942_0313 0.58 +0.4
312,076 + Synpcc7942_0313 0.61 -1.2
312,081 + Synpcc7942_0313 0.62 -0.3
312,084 - Synpcc7942_0313 0.63 -1.4
312,133 + Synpcc7942_0313 0.72 -1.3
312,133 + Synpcc7942_0313 0.72 +0.9
312,133 + Synpcc7942_0313 0.72 +0.7
312,133 + Synpcc7942_0313 0.72 +0.4
312,141 - Synpcc7942_0313 0.74 -0.4
312,141 - Synpcc7942_0313 0.74 -1.0
312,141 - Synpcc7942_0313 0.74 -0.4
312,141 - Synpcc7942_0313 0.74 -0.1
312,141 - Synpcc7942_0313 0.74 +0.9
312,141 - Synpcc7942_0313 0.74 -0.2
312,156 - Synpcc7942_0313 0.77 -2.7
312,173 + Synpcc7942_0313 0.80 +0.7
312,256 - +0.2
312,506 + Synpcc7942_0314 0.16 +0.1
312,514 - Synpcc7942_0314 0.18 -0.1
312,516 + Synpcc7942_0314 0.18 -0.4
312,516 + Synpcc7942_0314 0.18 +0.5
312,516 + Synpcc7942_0314 0.18 +0.1
312,516 + Synpcc7942_0314 0.18 +0.4
312,516 + Synpcc7942_0314 0.18 -0.5
312,516 + Synpcc7942_0314 0.18 +0.2
312,519 - Synpcc7942_0314 0.18 +1.0
312,519 - Synpcc7942_0314 0.18 -0.2
312,521 + +0.3
312,524 - +1.2
312,536 - Synpcc7942_0314 0.21 -1.0
312,544 - Synpcc7942_0314 0.22 +0.1
312,584 + Synpcc7942_0314 0.29 +0.8
312,607 + Synpcc7942_0314 0.32 -0.4
312,615 - Synpcc7942_0314 0.34 +0.4
312,615 - Synpcc7942_0314 0.34 +0.2
312,617 - Synpcc7942_0314 0.34 -0.8
312,630 + Synpcc7942_0314 0.36 +0.9
312,638 - Synpcc7942_0314 0.37 +1.0
312,638 - Synpcc7942_0314 0.37 -0.0
312,663 + Synpcc7942_0314 0.41 +0.3
312,778 + Synpcc7942_0314 0.60 +0.2
312,778 + Synpcc7942_0314 0.60 -0.6
312,780 - Synpcc7942_0314 0.60 +0.4
312,786 - Synpcc7942_0314 0.61 +0.6
312,788 - Synpcc7942_0314 0.61 +0.1
312,801 - Synpcc7942_0314 0.63 -0.4
312,825 - Synpcc7942_0314 0.67 +1.2
312,862 + Synpcc7942_0314 0.73 +0.4
312,887 + Synpcc7942_0314 0.77 -1.6
312,888 + Synpcc7942_0314 0.77 -0.2
312,895 - Synpcc7942_0314 0.78 +0.2
312,895 - Synpcc7942_0314 0.78 +0.3
312,897 - Synpcc7942_0314 0.78 -0.3
312,919 + Synpcc7942_0314 0.82 +1.0
312,921 + Synpcc7942_0314 0.82 +0.5
312,921 + Synpcc7942_0314 0.82 +0.6
312,929 - Synpcc7942_0314 0.83 +1.5
312,929 - Synpcc7942_0314 0.83 -0.0
313,009 + +0.3
313,031 + +0.1
313,042 + -0.1
313,050 - +0.4

Or see this region's nucleotide sequence