Experiment: Light Dark first sampling rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0255 and ama are separated by 89 nucleotides ama and Synpcc7942_0257 overlap by 4 nucleotides Synpcc7942_0257 and Synpcc7942_0258 are separated by 48 nucleotides
Synpcc7942_0255: Synpcc7942_0255 - ATPase, at 251,503 to 252,783
_0255
Synpcc7942_0256: ama - Peptidase M20D, amidohydrolase, at 252,873 to 254,099
ama
Synpcc7942_0257: Synpcc7942_0257 - Protein of unknown function DUF92, transmembrane, at 254,096 to 254,845
_0257
Synpcc7942_0258: Synpcc7942_0258 - hypothetical protein, at 254,894 to 255,334
_0258
Position (kb) 252
253
254
255 Strain fitness (log2 ratio) -1
0
1 at 251.883 kb on + strand, within Synpcc7942_0255 at 251.891 kb on - strand, within Synpcc7942_0255 at 251.891 kb on - strand, within Synpcc7942_0255 at 251.905 kb on - strand, within Synpcc7942_0255 at 252.008 kb on + strand, within Synpcc7942_0255 at 252.016 kb on - strand, within Synpcc7942_0255 at 252.016 kb on - strand, within Synpcc7942_0255 at 252.017 kb on + strand, within Synpcc7942_0255 at 252.050 kb on + strand, within Synpcc7942_0255 at 252.055 kb on + strand, within Synpcc7942_0255 at 252.058 kb on - strand, within Synpcc7942_0255 at 252.062 kb on + strand, within Synpcc7942_0255 at 252.062 kb on + strand, within Synpcc7942_0255 at 252.063 kb on - strand, within Synpcc7942_0255 at 252.175 kb on + strand, within Synpcc7942_0255 at 252.216 kb on + strand, within Synpcc7942_0255 at 252.216 kb on + strand, within Synpcc7942_0255 at 252.216 kb on + strand, within Synpcc7942_0255 at 252.223 kb on + strand, within Synpcc7942_0255 at 252.224 kb on - strand, within Synpcc7942_0255 at 252.224 kb on - strand, within Synpcc7942_0255 at 252.224 kb on - strand, within Synpcc7942_0255 at 252.224 kb on - strand, within Synpcc7942_0255 at 252.247 kb on + strand, within Synpcc7942_0255 at 252.254 kb on + strand, within Synpcc7942_0255 at 252.254 kb on + strand, within Synpcc7942_0255 at 252.254 kb on + strand, within Synpcc7942_0255 at 252.262 kb on - strand, within Synpcc7942_0255 at 252.262 kb on - strand, within Synpcc7942_0255 at 252.289 kb on - strand, within Synpcc7942_0255 at 252.296 kb on - strand, within Synpcc7942_0255 at 252.309 kb on - strand, within Synpcc7942_0255 at 252.311 kb on + strand, within Synpcc7942_0255 at 252.323 kb on + strand, within Synpcc7942_0255 at 252.372 kb on - strand, within Synpcc7942_0255 at 252.377 kb on - strand, within Synpcc7942_0255 at 252.377 kb on - strand, within Synpcc7942_0255 at 252.389 kb on + strand, within Synpcc7942_0255 at 252.409 kb on + strand, within Synpcc7942_0255 at 252.432 kb on + strand, within Synpcc7942_0255 at 252.443 kb on + strand, within Synpcc7942_0255 at 252.446 kb on - strand, within Synpcc7942_0255 at 252.463 kb on + strand, within Synpcc7942_0255 at 252.509 kb on - strand, within Synpcc7942_0255 at 252.556 kb on + strand, within Synpcc7942_0255 at 252.578 kb on - strand, within Synpcc7942_0255 at 252.578 kb on - strand, within Synpcc7942_0255 at 252.578 kb on - strand, within Synpcc7942_0255 at 252.610 kb on - strand, within Synpcc7942_0255 at 252.610 kb on - strand, within Synpcc7942_0255 at 252.623 kb on + strand, within Synpcc7942_0255 at 252.631 kb on - strand, within Synpcc7942_0255 at 252.633 kb on - strand at 252.633 kb on - strand, within Synpcc7942_0255 at 252.633 kb on - strand, within Synpcc7942_0255 at 252.634 kb on - strand, within Synpcc7942_0255 at 252.706 kb on + strand at 252.706 kb on + strand at 252.766 kb on + strand at 252.811 kb on + strand at 252.811 kb on + strand at 252.824 kb on - strand at 252.835 kb on + strand at 252.865 kb on + strand at 252.883 kb on + strand at 252.884 kb on - strand at 252.885 kb on - strand at 252.886 kb on - strand at 252.891 kb on - strand at 252.891 kb on - strand at 252.898 kb on + strand at 252.915 kb on + strand at 252.915 kb on + strand at 252.923 kb on - strand at 252.970 kb on + strand at 253.000 kb on + strand, within ama at 253.008 kb on - strand, within ama at 253.012 kb on + strand, within ama at 253.028 kb on - strand, within ama at 253.112 kb on + strand, within ama at 253.374 kb on + strand, within ama at 253.382 kb on - strand, within ama at 253.382 kb on - strand, within ama at 253.408 kb on + strand, within ama at 253.416 kb on - strand, within ama at 253.446 kb on + strand, within ama at 253.464 kb on - strand, within ama at 253.474 kb on - strand, within ama at 253.491 kb on - strand, within ama at 253.558 kb on + strand, within ama at 253.558 kb on - strand, within ama at 253.575 kb on - strand, within ama at 253.585 kb on + strand, within ama at 253.585 kb on + strand, within ama at 253.593 kb on - strand, within ama at 253.601 kb on + strand, within ama at 253.613 kb on + strand, within ama at 253.614 kb on - strand, within ama at 253.618 kb on + strand, within ama at 253.618 kb on - strand, within ama at 253.621 kb on - strand, within ama at 253.623 kb on - strand, within ama at 253.633 kb on - strand, within ama at 253.650 kb on + strand, within ama at 253.656 kb on + strand, within ama at 253.664 kb on - strand, within ama at 253.664 kb on - strand, within ama at 253.686 kb on + strand, within ama at 253.706 kb on - strand, within ama at 253.786 kb on + strand, within ama at 253.804 kb on - strand, within ama at 253.813 kb on + strand, within ama at 253.821 kb on - strand, within ama at 253.821 kb on - strand, within ama at 253.821 kb on - strand, within ama at 253.821 kb on - strand, within ama at 253.821 kb on - strand, within ama at 253.858 kb on - strand, within ama at 253.881 kb on - strand, within ama at 253.925 kb on + strand, within ama at 253.931 kb on - strand, within ama at 253.933 kb on - strand, within ama at 253.939 kb on - strand, within ama at 253.939 kb on - strand, within ama at 253.950 kb on - strand, within ama at 254.052 kb on - strand at 254.829 kb on + strand at 254.839 kb on + strand at 254.839 kb on + strand at 254.846 kb on + strand at 254.847 kb on - strand at 254.849 kb on - strand at 254.909 kb on + strand at 254.917 kb on - strand at 254.917 kb on - strand at 254.977 kb on - strand, within Synpcc7942_0258 at 255.044 kb on + strand, within Synpcc7942_0258 at 255.044 kb on + strand, within Synpcc7942_0258 at 255.044 kb on + strand, within Synpcc7942_0258 at 255.052 kb on - strand, within Synpcc7942_0258 at 255.052 kb on - strand, within Synpcc7942_0258 at 255.052 kb on - strand, within Synpcc7942_0258 at 255.052 kb on - strand, within Synpcc7942_0258 at 255.054 kb on - strand, within Synpcc7942_0258 at 255.067 kb on - strand, within Synpcc7942_0258 at 255.076 kb on - strand, within Synpcc7942_0258 at 255.078 kb on + strand, within Synpcc7942_0258
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep2 remove 251,883 + Synpcc7942_0255 0.30 -0.4 251,891 - Synpcc7942_0255 0.30 -0.7 251,891 - Synpcc7942_0255 0.30 +0.4 251,905 - Synpcc7942_0255 0.31 +0.0 252,008 + Synpcc7942_0255 0.39 +0.4 252,016 - Synpcc7942_0255 0.40 +0.8 252,016 - Synpcc7942_0255 0.40 -0.0 252,017 + Synpcc7942_0255 0.40 -0.1 252,050 + Synpcc7942_0255 0.43 +0.6 252,055 + Synpcc7942_0255 0.43 +0.3 252,058 - Synpcc7942_0255 0.43 -0.5 252,062 + Synpcc7942_0255 0.44 +0.2 252,062 + Synpcc7942_0255 0.44 +0.7 252,063 - Synpcc7942_0255 0.44 -0.4 252,175 + Synpcc7942_0255 0.52 +0.6 252,216 + Synpcc7942_0255 0.56 +0.0 252,216 + Synpcc7942_0255 0.56 +0.1 252,216 + Synpcc7942_0255 0.56 -0.6 252,223 + Synpcc7942_0255 0.56 -0.1 252,224 - Synpcc7942_0255 0.56 -0.3 252,224 - Synpcc7942_0255 0.56 +0.3 252,224 - Synpcc7942_0255 0.56 -0.3 252,224 - Synpcc7942_0255 0.56 +1.2 252,247 + Synpcc7942_0255 0.58 -0.8 252,254 + Synpcc7942_0255 0.59 +0.2 252,254 + Synpcc7942_0255 0.59 -0.1 252,254 + Synpcc7942_0255 0.59 -0.0 252,262 - Synpcc7942_0255 0.59 +0.6 252,262 - Synpcc7942_0255 0.59 -1.5 252,289 - Synpcc7942_0255 0.61 -0.4 252,296 - Synpcc7942_0255 0.62 +0.1 252,309 - Synpcc7942_0255 0.63 +0.3 252,311 + Synpcc7942_0255 0.63 +0.7 252,323 + Synpcc7942_0255 0.64 +0.2 252,372 - Synpcc7942_0255 0.68 +0.3 252,377 - Synpcc7942_0255 0.68 -1.0 252,377 - Synpcc7942_0255 0.68 +0.3 252,389 + Synpcc7942_0255 0.69 -0.4 252,409 + Synpcc7942_0255 0.71 +0.4 252,432 + Synpcc7942_0255 0.73 -0.8 252,443 + Synpcc7942_0255 0.73 +1.1 252,446 - Synpcc7942_0255 0.74 +1.6 252,463 + Synpcc7942_0255 0.75 +0.5 252,509 - Synpcc7942_0255 0.79 -0.7 252,556 + Synpcc7942_0255 0.82 -0.1 252,578 - Synpcc7942_0255 0.84 +0.4 252,578 - Synpcc7942_0255 0.84 +0.0 252,578 - Synpcc7942_0255 0.84 -0.6 252,610 - Synpcc7942_0255 0.86 -0.5 252,610 - Synpcc7942_0255 0.86 -0.6 252,623 + Synpcc7942_0255 0.87 +0.5 252,631 - Synpcc7942_0255 0.88 -0.0 252,633 - +0.2 252,633 - Synpcc7942_0255 0.88 +0.3 252,633 - Synpcc7942_0255 0.88 -0.1 252,634 - Synpcc7942_0255 0.88 +0.6 252,706 + -0.1 252,706 + +0.3 252,766 + +0.4 252,811 + -0.4 252,811 + -0.4 252,824 - -1.0 252,835 + +0.0 252,865 + +0.7 252,883 + +0.1 252,884 - +0.2 252,885 - +0.3 252,886 - +1.0 252,891 - +0.9 252,891 - -0.4 252,898 + +0.3 252,915 + +1.0 252,915 + -0.1 252,923 - -0.4 252,970 + -1.2 253,000 + ama Synpcc7942_0256 0.10 -1.0 253,008 - ama Synpcc7942_0256 0.11 +0.6 253,012 + ama Synpcc7942_0256 0.11 +0.6 253,028 - ama Synpcc7942_0256 0.13 -0.4 253,112 + ama Synpcc7942_0256 0.19 +0.1 253,374 + ama Synpcc7942_0256 0.41 +0.5 253,382 - ama Synpcc7942_0256 0.41 +1.1 253,382 - ama Synpcc7942_0256 0.41 +0.0 253,408 + ama Synpcc7942_0256 0.44 +0.2 253,416 - ama Synpcc7942_0256 0.44 +0.0 253,446 + ama Synpcc7942_0256 0.47 +0.2 253,464 - ama Synpcc7942_0256 0.48 +0.3 253,474 - ama Synpcc7942_0256 0.49 -0.7 253,491 - ama Synpcc7942_0256 0.50 +1.0 253,558 + ama Synpcc7942_0256 0.56 -0.4 253,558 - ama Synpcc7942_0256 0.56 +0.9 253,575 - ama Synpcc7942_0256 0.57 -1.4 253,585 + ama Synpcc7942_0256 0.58 +0.1 253,585 + ama Synpcc7942_0256 0.58 -0.0 253,593 - ama Synpcc7942_0256 0.59 +0.5 253,601 + ama Synpcc7942_0256 0.59 +0.5 253,613 + ama Synpcc7942_0256 0.60 -0.1 253,614 - ama Synpcc7942_0256 0.60 +0.4 253,618 + ama Synpcc7942_0256 0.61 +0.5 253,618 - ama Synpcc7942_0256 0.61 +0.3 253,621 - ama Synpcc7942_0256 0.61 +0.4 253,623 - ama Synpcc7942_0256 0.61 +0.1 253,633 - ama Synpcc7942_0256 0.62 -0.1 253,650 + ama Synpcc7942_0256 0.63 +0.1 253,656 + ama Synpcc7942_0256 0.64 +0.8 253,664 - ama Synpcc7942_0256 0.64 +1.3 253,664 - ama Synpcc7942_0256 0.64 +0.3 253,686 + ama Synpcc7942_0256 0.66 +0.1 253,706 - ama Synpcc7942_0256 0.68 -0.7 253,786 + ama Synpcc7942_0256 0.74 +0.5 253,804 - ama Synpcc7942_0256 0.76 -0.8 253,813 + ama Synpcc7942_0256 0.77 +0.3 253,821 - ama Synpcc7942_0256 0.77 +0.8 253,821 - ama Synpcc7942_0256 0.77 -0.6 253,821 - ama Synpcc7942_0256 0.77 -0.3 253,821 - ama Synpcc7942_0256 0.77 +0.4 253,821 - ama Synpcc7942_0256 0.77 -1.0 253,858 - ama Synpcc7942_0256 0.80 +0.6 253,881 - ama Synpcc7942_0256 0.82 +0.3 253,925 + ama Synpcc7942_0256 0.86 +0.7 253,931 - ama Synpcc7942_0256 0.86 +0.6 253,933 - ama Synpcc7942_0256 0.86 +0.4 253,939 - ama Synpcc7942_0256 0.87 -0.5 253,939 - ama Synpcc7942_0256 0.87 -0.0 253,950 - ama Synpcc7942_0256 0.88 -0.5 254,052 - +0.7 254,829 + -0.4 254,839 + +0.3 254,839 + -0.7 254,846 + +0.0 254,847 - -0.3 254,849 - +0.5 254,909 + +0.3 254,917 - -0.8 254,917 - +0.3 254,977 - Synpcc7942_0258 0.19 +0.2 255,044 + Synpcc7942_0258 0.34 +0.2 255,044 + Synpcc7942_0258 0.34 -1.1 255,044 + Synpcc7942_0258 0.34 -0.0 255,052 - Synpcc7942_0258 0.36 +0.2 255,052 - Synpcc7942_0258 0.36 +0.7 255,052 - Synpcc7942_0258 0.36 -0.7 255,052 - Synpcc7942_0258 0.36 -0.2 255,054 - Synpcc7942_0258 0.36 -0.4 255,067 - Synpcc7942_0258 0.39 +0.2 255,076 - Synpcc7942_0258 0.41 +0.6 255,078 + Synpcc7942_0258 0.42 -0.5
Or see this region's nucleotide sequence