Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0167

Experiment: Light Dark first sampling rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0166 and tRNA-Met are separated by 95 nucleotidestRNA-Met and Synpcc7942_0167 are separated by 86 nucleotidesSynpcc7942_0167 and Synpcc7942_0168 are separated by 139 nucleotides Synpcc7942_0166: Synpcc7942_0166 - hypothetical protein, at 165,483 to 166,436 _0166 Synpcc7942_R0028: tRNA-Met - tRNA-Met, at 166,532 to 166,608 tRNA-Met Synpcc7942_0167: Synpcc7942_0167 - hypothetical protein, at 166,695 to 166,925 _0167 Synpcc7942_0168: Synpcc7942_0168 - hypothetical protein, at 167,065 to 167,748 _0168 Position (kb) 166 167Strain fitness (log2 ratio) -3 -2 -1 0 1at 165.697 kb on + strand, within Synpcc7942_0166at 165.697 kb on + strand, within Synpcc7942_0166at 165.705 kb on - strand, within Synpcc7942_0166at 165.820 kb on + strand, within Synpcc7942_0166at 165.834 kb on - strand, within Synpcc7942_0166at 165.839 kb on + strand, within Synpcc7942_0166at 165.846 kb on + strand, within Synpcc7942_0166at 165.846 kb on + strand, within Synpcc7942_0166at 165.852 kb on + strand, within Synpcc7942_0166at 165.852 kb on + strand, within Synpcc7942_0166at 165.852 kb on + strand, within Synpcc7942_0166at 165.852 kb on - strand, within Synpcc7942_0166at 165.855 kb on - strand, within Synpcc7942_0166at 165.860 kb on - strand, within Synpcc7942_0166at 165.892 kb on + strand, within Synpcc7942_0166at 165.905 kb on + strand, within Synpcc7942_0166at 166.021 kb on + strand, within Synpcc7942_0166at 166.029 kb on + strand, within Synpcc7942_0166at 166.067 kb on + strand, within Synpcc7942_0166at 166.075 kb on - strand, within Synpcc7942_0166at 166.087 kb on - strand, within Synpcc7942_0166at 166.104 kb on - strand, within Synpcc7942_0166at 166.121 kb on + strand, within Synpcc7942_0166at 166.157 kb on + strand, within Synpcc7942_0166at 166.173 kb on + strand, within Synpcc7942_0166at 166.184 kb on + strand, within Synpcc7942_0166at 166.227 kb on + strand, within Synpcc7942_0166at 166.247 kb on - strand, within Synpcc7942_0166at 166.252 kb on - strand, within Synpcc7942_0166at 166.254 kb on + strand, within Synpcc7942_0166at 166.274 kb on + strand, within Synpcc7942_0166at 166.369 kb on - strandat 166.376 kb on + strandat 166.383 kb on + strandat 166.384 kb on + strandat 166.419 kb on + strandat 166.425 kb on + strandat 166.427 kb on - strandat 166.433 kb on - strandat 166.438 kb on - strandat 166.662 kb on - strandat 166.677 kb on - strandat 166.690 kb on + strandat 166.692 kb on + strandat 166.700 kb on - strandat 166.720 kb on + strand, within Synpcc7942_0167at 166.720 kb on + strand, within Synpcc7942_0167at 166.728 kb on - strand, within Synpcc7942_0167at 166.738 kb on - strand, within Synpcc7942_0167at 166.784 kb on - strand, within Synpcc7942_0167at 166.837 kb on + strand, within Synpcc7942_0167at 166.845 kb on - strand, within Synpcc7942_0167at 166.845 kb on - strand, within Synpcc7942_0167at 166.871 kb on + strand, within Synpcc7942_0167at 166.927 kb on + strandat 166.927 kb on + strandat 166.927 kb on + strandat 166.935 kb on - strandat 166.935 kb on - strandat 166.949 kb on + strandat 166.949 kb on + strandat 166.954 kb on + strandat 166.962 kb on - strandat 166.972 kb on - strandat 166.979 kb on - strandat 167.005 kb on + strandat 167.005 kb on + strandat 167.005 kb on + strandat 167.005 kb on + strandat 167.005 kb on + strandat 167.005 kb on + strandat 167.013 kb on - strandat 167.013 kb on - strandat 167.013 kb on - strandat 167.013 kb on - strandat 167.022 kb on + strandat 167.023 kb on - strandat 167.033 kb on + strandat 167.080 kb on + strandat 167.080 kb on + strandat 167.080 kb on + strandat 167.080 kb on + strandat 167.080 kb on + strandat 167.080 kb on + strandat 167.080 kb on + strandat 167.085 kb on + strandat 167.085 kb on + strandat 167.088 kb on - strandat 167.088 kb on - strandat 167.088 kb on - strandat 167.088 kb on - strandat 167.093 kb on - strandat 167.093 kb on - strandat 167.163 kb on - strand, within Synpcc7942_0168at 167.178 kb on + strand, within Synpcc7942_0168at 167.185 kb on - strand, within Synpcc7942_0168at 167.205 kb on + strand, within Synpcc7942_0168at 167.224 kb on - strand, within Synpcc7942_0168at 167.241 kb on + strand, within Synpcc7942_0168at 167.249 kb on + strand, within Synpcc7942_0168at 167.249 kb on - strand, within Synpcc7942_0168at 167.257 kb on - strand, within Synpcc7942_0168at 167.278 kb on - strand, within Synpcc7942_0168at 167.285 kb on + strand, within Synpcc7942_0168at 167.312 kb on + strandat 167.340 kb on + strand, within Synpcc7942_0168at 167.340 kb on + strand, within Synpcc7942_0168at 167.340 kb on + strand, within Synpcc7942_0168at 167.380 kb on - strand, within Synpcc7942_0168at 167.380 kb on - strand, within Synpcc7942_0168at 167.425 kb on + strand, within Synpcc7942_0168at 167.432 kb on + strand, within Synpcc7942_0168at 167.437 kb on + strand, within Synpcc7942_0168at 167.440 kb on - strand, within Synpcc7942_0168at 167.440 kb on - strand, within Synpcc7942_0168at 167.440 kb on - strand, within Synpcc7942_0168at 167.485 kb on + strand, within Synpcc7942_0168at 167.493 kb on - strand, within Synpcc7942_0168at 167.509 kb on + strand, within Synpcc7942_0168at 167.519 kb on - strand, within Synpcc7942_0168at 167.570 kb on + strand, within Synpcc7942_0168at 167.594 kb on + strand, within Synpcc7942_0168at 167.603 kb on - strand, within Synpcc7942_0168at 167.611 kb on + strand, within Synpcc7942_0168at 167.614 kb on + strand, within Synpcc7942_0168at 167.657 kb on + strand, within Synpcc7942_0168at 167.657 kb on + strand, within Synpcc7942_0168at 167.665 kb on - strand, within Synpcc7942_0168at 167.670 kb on - strand, within Synpcc7942_0168at 167.682 kb on - strandat 167.689 kb on + strandat 167.690 kb on - strandat 167.758 kb on + strandat 167.771 kb on - strandat 167.792 kb on - strandat 167.826 kb on - strandat 167.844 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Light Dark first sampling rep2
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165,697 + Synpcc7942_0166 0.22 -2.0
165,697 + Synpcc7942_0166 0.22 -0.7
165,705 - Synpcc7942_0166 0.23 -0.7
165,820 + Synpcc7942_0166 0.35 +0.6
165,834 - Synpcc7942_0166 0.37 -1.3
165,839 + Synpcc7942_0166 0.37 -3.0
165,846 + Synpcc7942_0166 0.38 -1.1
165,846 + Synpcc7942_0166 0.38 -1.6
165,852 + Synpcc7942_0166 0.39 -2.4
165,852 + Synpcc7942_0166 0.39 -0.8
165,852 + Synpcc7942_0166 0.39 -0.8
165,852 - Synpcc7942_0166 0.39 -0.7
165,855 - Synpcc7942_0166 0.39 -1.4
165,860 - Synpcc7942_0166 0.40 -1.0
165,892 + Synpcc7942_0166 0.43 -0.4
165,905 + Synpcc7942_0166 0.44 +0.1
166,021 + Synpcc7942_0166 0.56 -2.1
166,029 + Synpcc7942_0166 0.57 -1.4
166,067 + Synpcc7942_0166 0.61 -2.5
166,075 - Synpcc7942_0166 0.62 -0.7
166,087 - Synpcc7942_0166 0.63 -0.1
166,104 - Synpcc7942_0166 0.65 -2.4
166,121 + Synpcc7942_0166 0.67 -0.8
166,157 + Synpcc7942_0166 0.71 -0.7
166,173 + Synpcc7942_0166 0.72 +0.1
166,184 + Synpcc7942_0166 0.73 -0.2
166,227 + Synpcc7942_0166 0.78 +0.3
166,247 - Synpcc7942_0166 0.80 -1.5
166,252 - Synpcc7942_0166 0.81 +0.3
166,254 + Synpcc7942_0166 0.81 -3.2
166,274 + Synpcc7942_0166 0.83 -1.2
166,369 - -1.4
166,376 + -1.4
166,383 + -0.4
166,384 + -1.8
166,419 + +0.4
166,425 + -0.2
166,427 - +0.4
166,433 - +0.4
166,438 - +0.2
166,662 - -0.2
166,677 - +0.3
166,690 + +0.3
166,692 + -0.7
166,700 - -0.1
166,720 + Synpcc7942_0167 0.11 +0.8
166,720 + Synpcc7942_0167 0.11 -0.0
166,728 - Synpcc7942_0167 0.14 -0.3
166,738 - Synpcc7942_0167 0.19 +0.6
166,784 - Synpcc7942_0167 0.39 -0.3
166,837 + Synpcc7942_0167 0.61 +0.7
166,845 - Synpcc7942_0167 0.65 -0.3
166,845 - Synpcc7942_0167 0.65 -0.1
166,871 + Synpcc7942_0167 0.76 +0.6
166,927 + +0.3
166,927 + -0.5
166,927 + +0.6
166,935 - +0.4
166,935 - -0.5
166,949 + +0.7
166,949 + -0.3
166,954 + +0.4
166,962 - -2.6
166,972 - -1.5
166,979 - +0.4
167,005 + +0.1
167,005 + -0.8
167,005 + +0.0
167,005 + +0.2
167,005 + +0.6
167,005 + -0.6
167,013 - -0.2
167,013 - +0.3
167,013 - +0.5
167,013 - -0.4
167,022 + -1.0
167,023 - +0.1
167,033 + +0.4
167,080 + +0.6
167,080 + -0.0
167,080 + +0.1
167,080 + +1.0
167,080 + +0.0
167,080 + +0.1
167,080 + -0.3
167,085 + +0.9
167,085 + +0.0
167,088 - -1.1
167,088 - +0.9
167,088 - -0.6
167,088 - +0.4
167,093 - -0.4
167,093 - -2.0
167,163 - Synpcc7942_0168 0.14 +0.3
167,178 + Synpcc7942_0168 0.17 +0.4
167,185 - Synpcc7942_0168 0.18 -0.1
167,205 + Synpcc7942_0168 0.20 -0.1
167,224 - Synpcc7942_0168 0.23 -1.0
167,241 + Synpcc7942_0168 0.26 -0.2
167,249 + Synpcc7942_0168 0.27 -0.3
167,249 - Synpcc7942_0168 0.27 +0.6
167,257 - Synpcc7942_0168 0.28 +0.2
167,278 - Synpcc7942_0168 0.31 +0.5
167,285 + Synpcc7942_0168 0.32 +0.2
167,312 + +0.6
167,340 + Synpcc7942_0168 0.40 -0.4
167,340 + Synpcc7942_0168 0.40 +0.1
167,340 + Synpcc7942_0168 0.40 -0.4
167,380 - Synpcc7942_0168 0.46 +0.9
167,380 - Synpcc7942_0168 0.46 -0.2
167,425 + Synpcc7942_0168 0.53 +1.0
167,432 + Synpcc7942_0168 0.54 +0.1
167,437 + Synpcc7942_0168 0.54 +0.4
167,440 - Synpcc7942_0168 0.55 -0.2
167,440 - Synpcc7942_0168 0.55 +0.4
167,440 - Synpcc7942_0168 0.55 -1.3
167,485 + Synpcc7942_0168 0.61 -0.4
167,493 - Synpcc7942_0168 0.63 +0.2
167,509 + Synpcc7942_0168 0.65 +0.5
167,519 - Synpcc7942_0168 0.66 +0.6
167,570 + Synpcc7942_0168 0.74 -0.1
167,594 + Synpcc7942_0168 0.77 -1.6
167,603 - Synpcc7942_0168 0.79 -0.2
167,611 + Synpcc7942_0168 0.80 -0.2
167,614 + Synpcc7942_0168 0.80 -0.3
167,657 + Synpcc7942_0168 0.87 -2.0
167,657 + Synpcc7942_0168 0.87 +0.4
167,665 - Synpcc7942_0168 0.88 +0.9
167,670 - Synpcc7942_0168 0.88 -0.3
167,682 - +0.2
167,689 + -0.4
167,690 - +0.5
167,758 + +0.2
167,771 - -0.2
167,792 - +1.0
167,826 - +0.1
167,844 - -0.3

Or see this region's nucleotide sequence