Experiment: Light Dark first sampling rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0051 and Synpcc7942_0052 are separated by 4 nucleotides Synpcc7942_0052 and Synpcc7942_0053 are separated by 173 nucleotides Synpcc7942_0053 and Synpcc7942_0054 are separated by 70 nucleotides Synpcc7942_0054 and Synpcc7942_0055 are separated by 32 nucleotides
Synpcc7942_0051: Synpcc7942_0051 - TPR repeat, at 52,606 to 54,507
_0051
Synpcc7942_0052: Synpcc7942_0052 - hypothetical protein, at 54,512 to 55,030
_0052
Synpcc7942_0053: Synpcc7942_0053 - hypothetical protein, at 55,204 to 56,352
_0053
Synpcc7942_0054: Synpcc7942_0054 - hypothetical protein, at 56,423 to 57,190
_0054
Synpcc7942_0055: Synpcc7942_0055 - hypothetical protein, at 57,223 to 57,906
_0055
Position (kb) 55
56
57 Strain fitness (log2 ratio) -2
-1
0
1
2 at 54.316 kb on + strand, within Synpcc7942_0051 at 54.361 kb on - strand at 54.496 kb on - strand at 54.707 kb on - strand, within Synpcc7942_0052 at 54.755 kb on - strand, within Synpcc7942_0052 at 54.768 kb on - strand, within Synpcc7942_0052 at 54.768 kb on - strand, within Synpcc7942_0052 at 55.322 kb on + strand, within Synpcc7942_0053 at 55.656 kb on + strand, within Synpcc7942_0053 at 55.664 kb on - strand, within Synpcc7942_0053 at 55.678 kb on + strand, within Synpcc7942_0053 at 55.700 kb on - strand, within Synpcc7942_0053 at 55.731 kb on + strand, within Synpcc7942_0053 at 55.858 kb on + strand, within Synpcc7942_0053 at 56.006 kb on - strand, within Synpcc7942_0053 at 56.115 kb on + strand at 56.134 kb on - strand, within Synpcc7942_0053 at 56.256 kb on + strand at 56.268 kb on + strand at 56.294 kb on - strand at 56.302 kb on - strand at 56.556 kb on + strand, within Synpcc7942_0054 at 56.564 kb on - strand, within Synpcc7942_0054 at 56.564 kb on - strand, within Synpcc7942_0054 at 56.683 kb on - strand, within Synpcc7942_0054 at 56.694 kb on - strand, within Synpcc7942_0054 at 56.809 kb on - strand, within Synpcc7942_0054 at 56.881 kb on + strand, within Synpcc7942_0054 at 56.953 kb on + strand, within Synpcc7942_0054 at 56.961 kb on - strand, within Synpcc7942_0054 at 57.014 kb on + strand, within Synpcc7942_0054 at 57.014 kb on - strand, within Synpcc7942_0054 at 57.022 kb on - strand, within Synpcc7942_0054 at 57.147 kb on + strand at 57.278 kb on + strand at 57.329 kb on - strand, within Synpcc7942_0055
Per-strain Table
Position Strand Gene LocusTag Fraction Light Dark first sampling rep2 remove 54,316 + Synpcc7942_0051 0.90 -0.8 54,361 - -0.2 54,496 - -0.1 54,707 - Synpcc7942_0052 0.38 +0.7 54,755 - Synpcc7942_0052 0.47 +0.6 54,768 - Synpcc7942_0052 0.49 +0.6 54,768 - Synpcc7942_0052 0.49 +0.3 55,322 + Synpcc7942_0053 0.10 +0.1 55,656 + Synpcc7942_0053 0.39 -0.6 55,664 - Synpcc7942_0053 0.40 -0.4 55,678 + Synpcc7942_0053 0.41 -0.5 55,700 - Synpcc7942_0053 0.43 +0.5 55,731 + Synpcc7942_0053 0.46 +0.7 55,858 + Synpcc7942_0053 0.57 +1.9 56,006 - Synpcc7942_0053 0.70 +0.6 56,115 + +0.9 56,134 - Synpcc7942_0053 0.81 +0.2 56,256 + -0.3 56,268 + +0.9 56,294 - -0.3 56,302 - +1.1 56,556 + Synpcc7942_0054 0.17 +0.3 56,564 - Synpcc7942_0054 0.18 -0.1 56,564 - Synpcc7942_0054 0.18 +0.8 56,683 - Synpcc7942_0054 0.34 +0.7 56,694 - Synpcc7942_0054 0.35 +0.3 56,809 - Synpcc7942_0054 0.50 -0.1 56,881 + Synpcc7942_0054 0.60 +0.4 56,953 + Synpcc7942_0054 0.69 -0.2 56,961 - Synpcc7942_0054 0.70 -0.2 57,014 + Synpcc7942_0054 0.77 -2.2 57,014 - Synpcc7942_0054 0.77 -0.1 57,022 - Synpcc7942_0054 0.78 -0.4 57,147 + -0.2 57,278 + +0.8 57,329 - Synpcc7942_0055 0.15 +0.4
Or see this region's nucleotide sequence