Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0003

Experiment: Light Dark first sampling rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdnaN and Synpcc7942_0002 are separated by 24 nucleotidesSynpcc7942_0002 and purL are separated by 43 nucleotidespurL and purF are separated by 84 nucleotides Synpcc7942_0001: dnaN - DNA polymerase III subunit beta, at 65 to 1,237 dnaN Synpcc7942_0002: Synpcc7942_0002 - hypothetical protein, at 1,262 to 2,134 _0002 Synpcc7942_0003: purL - phosphoribosylformylglycinamidine synthase II, at 2,178 to 4,511 purL Synpcc7942_0004: purF - amidophosphoribosyltransferase, at 4,596 to 6,077 purF Position (kb) 2 3 4 5Strain fitness (log2 ratio) -2 -1 0 1at 1.200 kb on - strandat 1.231 kb on + strandat 1.287 kb on - strandat 1.294 kb on + strandat 1.294 kb on - strandat 1.348 kb on - strandat 1.363 kb on + strand, within Synpcc7942_0002at 1.363 kb on + strand, within Synpcc7942_0002at 1.371 kb on - strand, within Synpcc7942_0002at 1.399 kb on - strand, within Synpcc7942_0002at 1.418 kb on - strand, within Synpcc7942_0002at 1.430 kb on - strand, within Synpcc7942_0002at 1.451 kb on + strand, within Synpcc7942_0002at 1.459 kb on - strand, within Synpcc7942_0002at 1.464 kb on - strand, within Synpcc7942_0002at 1.486 kb on + strand, within Synpcc7942_0002at 1.486 kb on + strand, within Synpcc7942_0002at 1.486 kb on + strand, within Synpcc7942_0002at 1.486 kb on + strand, within Synpcc7942_0002at 1.488 kb on + strand, within Synpcc7942_0002at 1.492 kb on - strand, within Synpcc7942_0002at 1.494 kb on - strand, within Synpcc7942_0002at 1.531 kb on + strand, within Synpcc7942_0002at 1.536 kb on + strand, within Synpcc7942_0002at 1.564 kb on - strand, within Synpcc7942_0002at 1.619 kb on + strand, within Synpcc7942_0002at 1.619 kb on + strand, within Synpcc7942_0002at 1.619 kb on + strand, within Synpcc7942_0002at 1.619 kb on + strand, within Synpcc7942_0002at 1.624 kb on + strand, within Synpcc7942_0002at 1.624 kb on + strand, within Synpcc7942_0002at 1.627 kb on - strand, within Synpcc7942_0002at 1.627 kb on - strand, within Synpcc7942_0002at 1.629 kb on + strand, within Synpcc7942_0002at 1.629 kb on + strand, within Synpcc7942_0002at 1.632 kb on + strand, within Synpcc7942_0002at 1.632 kb on - strand, within Synpcc7942_0002at 1.632 kb on - strand, within Synpcc7942_0002at 1.672 kb on - strand, within Synpcc7942_0002at 1.683 kb on - strand, within Synpcc7942_0002at 1.689 kb on + strand, within Synpcc7942_0002at 1.700 kb on + strand, within Synpcc7942_0002at 1.700 kb on + strand, within Synpcc7942_0002at 1.708 kb on - strand, within Synpcc7942_0002at 1.708 kb on - strand, within Synpcc7942_0002at 1.708 kb on - strand, within Synpcc7942_0002at 1.708 kb on - strand, within Synpcc7942_0002at 1.731 kb on - strand, within Synpcc7942_0002at 1.780 kb on - strand, within Synpcc7942_0002at 1.802 kb on - strand, within Synpcc7942_0002at 1.825 kb on - strand, within Synpcc7942_0002at 1.827 kb on + strand, within Synpcc7942_0002at 1.827 kb on + strand, within Synpcc7942_0002at 1.827 kb on + strandat 1.835 kb on - strand, within Synpcc7942_0002at 1.856 kb on - strand, within Synpcc7942_0002at 1.862 kb on - strand, within Synpcc7942_0002at 1.868 kb on + strand, within Synpcc7942_0002at 1.882 kb on + strand, within Synpcc7942_0002at 1.882 kb on + strand, within Synpcc7942_0002at 1.890 kb on - strand, within Synpcc7942_0002at 1.904 kb on + strand, within Synpcc7942_0002at 1.912 kb on - strand, within Synpcc7942_0002at 1.912 kb on - strand, within Synpcc7942_0002at 1.912 kb on - strand, within Synpcc7942_0002at 1.912 kb on - strand, within Synpcc7942_0002at 1.912 kb on - strand, within Synpcc7942_0002at 1.913 kb on - strand, within Synpcc7942_0002at 1.915 kb on + strand, within Synpcc7942_0002at 1.915 kb on + strand, within Synpcc7942_0002at 1.925 kb on + strand, within Synpcc7942_0002at 1.937 kb on + strand, within Synpcc7942_0002at 1.937 kb on + strandat 1.945 kb on - strand, within Synpcc7942_0002at 1.960 kb on - strand, within Synpcc7942_0002at 1.973 kb on - strand, within Synpcc7942_0002at 1.983 kb on - strand, within Synpcc7942_0002at 1.983 kb on - strand, within Synpcc7942_0002at 1.996 kb on + strand, within Synpcc7942_0002at 1.996 kb on + strand, within Synpcc7942_0002at 1.996 kb on + strand, within Synpcc7942_0002at 2.003 kb on - strand, within Synpcc7942_0002at 2.004 kb on - strand, within Synpcc7942_0002at 2.004 kb on - strand, within Synpcc7942_0002at 2.053 kb on + strandat 2.129 kb on + strandat 2.129 kb on + strandat 2.129 kb on + strandat 2.129 kb on + strandat 2.728 kb on - strand, within purLat 2.859 kb on + strand, within purLat 2.941 kb on + strand, within purLat 3.165 kb on - strand, within purLat 3.457 kb on + strand, within purLat 4.500 kb on + strandat 4.519 kb on + strandat 4.527 kb on - strandat 4.594 kb on - strandat 4.601 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Light Dark first sampling rep2
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1,200 - +0.2
1,231 + +0.3
1,287 - +0.1
1,294 + -0.5
1,294 - +1.3
1,348 - -0.8
1,363 + Synpcc7942_0002 0.12 -1.0
1,363 + Synpcc7942_0002 0.12 +0.0
1,371 - Synpcc7942_0002 0.12 -0.4
1,399 - Synpcc7942_0002 0.16 -0.4
1,418 - Synpcc7942_0002 0.18 -0.6
1,430 - Synpcc7942_0002 0.19 -0.1
1,451 + Synpcc7942_0002 0.22 -0.9
1,459 - Synpcc7942_0002 0.23 +0.1
1,464 - Synpcc7942_0002 0.23 +0.0
1,486 + Synpcc7942_0002 0.26 -1.3
1,486 + Synpcc7942_0002 0.26 -0.3
1,486 + Synpcc7942_0002 0.26 -0.9
1,486 + Synpcc7942_0002 0.26 -1.0
1,488 + Synpcc7942_0002 0.26 +0.9
1,492 - Synpcc7942_0002 0.26 -0.8
1,494 - Synpcc7942_0002 0.27 +0.1
1,531 + Synpcc7942_0002 0.31 -0.1
1,536 + Synpcc7942_0002 0.31 +0.8
1,564 - Synpcc7942_0002 0.35 -0.0
1,619 + Synpcc7942_0002 0.41 -0.1
1,619 + Synpcc7942_0002 0.41 -0.0
1,619 + Synpcc7942_0002 0.41 +0.1
1,619 + Synpcc7942_0002 0.41 +0.2
1,624 + Synpcc7942_0002 0.41 +1.3
1,624 + Synpcc7942_0002 0.41 -1.0
1,627 - Synpcc7942_0002 0.42 -1.0
1,627 - Synpcc7942_0002 0.42 -1.4
1,629 + Synpcc7942_0002 0.42 +0.2
1,629 + Synpcc7942_0002 0.42 -1.3
1,632 + Synpcc7942_0002 0.42 +0.1
1,632 - Synpcc7942_0002 0.42 -0.2
1,632 - Synpcc7942_0002 0.42 +0.0
1,672 - Synpcc7942_0002 0.47 -0.4
1,683 - Synpcc7942_0002 0.48 -0.0
1,689 + Synpcc7942_0002 0.49 -0.4
1,700 + Synpcc7942_0002 0.50 +0.6
1,700 + Synpcc7942_0002 0.50 -0.3
1,708 - Synpcc7942_0002 0.51 -0.2
1,708 - Synpcc7942_0002 0.51 +0.9
1,708 - Synpcc7942_0002 0.51 -0.8
1,708 - Synpcc7942_0002 0.51 -0.7
1,731 - Synpcc7942_0002 0.54 +0.1
1,780 - Synpcc7942_0002 0.59 -0.9
1,802 - Synpcc7942_0002 0.62 -0.1
1,825 - Synpcc7942_0002 0.64 -0.7
1,827 + Synpcc7942_0002 0.65 -0.1
1,827 + Synpcc7942_0002 0.65 +0.1
1,827 + -0.6
1,835 - Synpcc7942_0002 0.66 -2.0
1,856 - Synpcc7942_0002 0.68 -0.6
1,862 - Synpcc7942_0002 0.69 +1.2
1,868 + Synpcc7942_0002 0.69 +0.1
1,882 + Synpcc7942_0002 0.71 -0.5
1,882 + Synpcc7942_0002 0.71 -0.3
1,890 - Synpcc7942_0002 0.72 -1.8
1,904 + Synpcc7942_0002 0.74 -1.9
1,912 - Synpcc7942_0002 0.74 +0.5
1,912 - Synpcc7942_0002 0.74 -0.9
1,912 - Synpcc7942_0002 0.74 +0.6
1,912 - Synpcc7942_0002 0.74 -0.2
1,912 - Synpcc7942_0002 0.74 -1.1
1,913 - Synpcc7942_0002 0.75 -1.0
1,915 + Synpcc7942_0002 0.75 +0.1
1,915 + Synpcc7942_0002 0.75 -0.1
1,925 + Synpcc7942_0002 0.76 +0.2
1,937 + Synpcc7942_0002 0.77 -0.5
1,937 + -1.0
1,945 - Synpcc7942_0002 0.78 +0.6
1,960 - Synpcc7942_0002 0.80 +0.4
1,973 - Synpcc7942_0002 0.81 -0.2
1,983 - Synpcc7942_0002 0.83 -0.9
1,983 - Synpcc7942_0002 0.83 -1.0
1,996 + Synpcc7942_0002 0.84 -0.3
1,996 + Synpcc7942_0002 0.84 -1.7
1,996 + Synpcc7942_0002 0.84 +0.2
2,003 - Synpcc7942_0002 0.85 -2.4
2,004 - Synpcc7942_0002 0.85 -0.9
2,004 - Synpcc7942_0002 0.85 -0.7
2,053 + +0.3
2,129 + +0.1
2,129 + +0.3
2,129 + -0.7
2,129 + +0.2
2,728 - purL Synpcc7942_0003 0.24 +0.4
2,859 + purL Synpcc7942_0003 0.29 +0.2
2,941 + purL Synpcc7942_0003 0.33 +0.5
3,165 - purL Synpcc7942_0003 0.42 -0.0
3,457 + purL Synpcc7942_0003 0.55 +0.4
4,500 + +0.7
4,519 + -1.7
4,527 - -0.3
4,594 - -2.6
4,601 - +0.1

Or see this region's nucleotide sequence