Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS06865

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS06855 and RS_RS06860 overlap by 4 nucleotidesRS_RS06860 and RS_RS06865 are separated by 70 nucleotidesRS_RS06865 and RS_RS06870 are separated by 120 nucleotides RS_RS06855: RS_RS06855 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB, at 1,456,302 to 1,457,033 _RS06855 RS_RS06860: RS_RS06860 - ribosomal-protein-alanine N-acetyltransferase, at 1,457,030 to 1,457,563 _RS06860 RS_RS06865: RS_RS06865 - uracil-DNA glycosylase, at 1,457,634 to 1,458,512 _RS06865 RS_RS06870: RS_RS06870 - lysophospholipid transporter LplT, at 1,458,633 to 1,459,949 _RS06870 Position (kb) 1457 1458 1459Strain fitness (log2 ratio) -2 -1 0 1at 1457.480 kb on + strand, within RS_RS06860at 1458.673 kb on + strandat 1458.790 kb on + strand, within RS_RS06870at 1458.950 kb on - strand, within RS_RS06870at 1458.964 kb on + strand, within RS_RS06870at 1458.965 kb on - strand, within RS_RS06870at 1458.965 kb on - strand, within RS_RS06870at 1459.025 kb on - strand, within RS_RS06870at 1459.025 kb on - strand, within RS_RS06870

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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1,457,480 + RS_RS06860 0.84 -0.1
1,458,673 + -0.8
1,458,790 + RS_RS06870 0.12 -0.7
1,458,950 - RS_RS06870 0.24 +0.2
1,458,964 + RS_RS06870 0.25 -0.5
1,458,965 - RS_RS06870 0.25 -1.3
1,458,965 - RS_RS06870 0.25 -1.9
1,459,025 - RS_RS06870 0.30 -2.4
1,459,025 - RS_RS06870 0.30 -0.6

Or see this region's nucleotide sequence