Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS06520 and RS_RS06525 are separated by 268 nucleotides RS_RS06525 and RS_RS06530 are separated by 122 nucleotides RS_RS06530 and RS_RS25450 are separated by 290 nucleotides RS_RS25450 and RS_RS06535 are separated by 74 nucleotides RS_RS06535 and RS_RS06540 are separated by 115 nucleotides
RS_RS06520: RS_RS06520 - hypothetical protein, at 1,386,613 to 1,387,851
_RS06520
RS_RS06525: RS_RS06525 - hypothetical protein, at 1,388,120 to 1,388,509
_RS06525
RS_RS06530: RS_RS06530 - hypothetical protein, at 1,388,632 to 1,390,359
_RS06530
RS_RS25450: RS_RS25450 - hypothetical protein, at 1,390,650 to 1,390,854
_RS25450
RS_RS06535: RS_RS06535 - hypothetical protein, at 1,390,929 to 1,391,117
_RS06535
RS_RS06540: RS_RS06540 - LexA repressor, at 1,391,233 to 1,391,883
_RS06540
Position (kb) 1388
1389
1390
1391 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1387.947 kb on + strand at 1387.948 kb on - strand at 1387.948 kb on - strand at 1387.948 kb on - strand at 1387.950 kb on - strand at 1387.962 kb on + strand at 1387.962 kb on + strand at 1387.962 kb on + strand at 1387.963 kb on - strand at 1387.991 kb on + strand at 1387.992 kb on - strand at 1388.122 kb on - strand at 1388.122 kb on - strand at 1388.122 kb on - strand at 1388.129 kb on + strand at 1388.129 kb on + strand at 1388.225 kb on - strand, within RS_RS06525 at 1388.226 kb on + strand, within RS_RS06525 at 1388.239 kb on - strand, within RS_RS06525 at 1388.239 kb on - strand, within RS_RS06525 at 1388.334 kb on + strand, within RS_RS06525 at 1388.347 kb on - strand, within RS_RS06525 at 1388.594 kb on - strand at 1388.640 kb on + strand at 1388.641 kb on - strand at 1388.900 kb on - strand, within RS_RS06530 at 1388.962 kb on - strand, within RS_RS06530 at 1389.277 kb on + strand, within RS_RS06530 at 1389.380 kb on - strand, within RS_RS06530 at 1389.380 kb on - strand, within RS_RS06530 at 1389.406 kb on + strand, within RS_RS06530 at 1389.407 kb on - strand, within RS_RS06530 at 1389.407 kb on - strand, within RS_RS06530 at 1389.833 kb on - strand, within RS_RS06530 at 1389.859 kb on + strand, within RS_RS06530 at 1389.860 kb on - strand, within RS_RS06530 at 1389.860 kb on - strand, within RS_RS06530 at 1389.887 kb on - strand, within RS_RS06530 at 1389.887 kb on - strand, within RS_RS06530 at 1390.243 kb on - strand at 1390.357 kb on + strand at 1390.437 kb on + strand at 1390.438 kb on - strand at 1390.438 kb on - strand at 1390.464 kb on + strand at 1390.599 kb on + strand at 1390.704 kb on + strand, within RS_RS25450 at 1390.704 kb on + strand, within RS_RS25450 at 1390.705 kb on - strand, within RS_RS25450 at 1390.705 kb on - strand, within RS_RS25450 at 1390.867 kb on - strand at 1390.897 kb on + strand at 1390.898 kb on - strand at 1391.038 kb on + strand, within RS_RS06535 at 1391.038 kb on + strand, within RS_RS06535 at 1391.175 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 1,387,947 + -0.1 1,387,948 - -0.2 1,387,948 - -0.1 1,387,948 - +0.0 1,387,950 - +0.0 1,387,962 + +0.5 1,387,962 + -0.2 1,387,962 + -0.3 1,387,963 - -0.8 1,387,991 + -0.0 1,387,992 - -0.5 1,388,122 - -0.1 1,388,122 - -0.1 1,388,122 - +0.9 1,388,129 + -1.5 1,388,129 + -0.3 1,388,225 - RS_RS06525 0.27 -1.7 1,388,226 + RS_RS06525 0.27 -0.6 1,388,239 - RS_RS06525 0.31 -0.7 1,388,239 - RS_RS06525 0.31 -1.0 1,388,334 + RS_RS06525 0.55 -1.2 1,388,347 - RS_RS06525 0.58 +0.3 1,388,594 - +0.3 1,388,640 + +0.2 1,388,641 - +1.0 1,388,900 - RS_RS06530 0.16 +0.7 1,388,962 - RS_RS06530 0.19 +0.1 1,389,277 + RS_RS06530 0.37 +0.9 1,389,380 - RS_RS06530 0.43 +0.1 1,389,380 - RS_RS06530 0.43 -0.1 1,389,406 + RS_RS06530 0.45 -0.2 1,389,407 - RS_RS06530 0.45 +0.9 1,389,407 - RS_RS06530 0.45 -1.8 1,389,833 - RS_RS06530 0.70 -1.6 1,389,859 + RS_RS06530 0.71 -1.3 1,389,860 - RS_RS06530 0.71 +0.4 1,389,860 - RS_RS06530 0.71 +0.5 1,389,887 - RS_RS06530 0.73 -0.1 1,389,887 - RS_RS06530 0.73 -0.2 1,390,243 - +0.2 1,390,357 + -0.1 1,390,437 + -0.6 1,390,438 - -0.3 1,390,438 - -0.1 1,390,464 + -0.4 1,390,599 + -0.5 1,390,704 + RS_RS25450 0.26 -0.4 1,390,704 + RS_RS25450 0.26 +0.4 1,390,705 - RS_RS25450 0.27 -0.4 1,390,705 - RS_RS25450 0.27 -0.6 1,390,867 - -1.0 1,390,897 + +2.0 1,390,898 - -0.1 1,391,038 + RS_RS06535 0.58 +0.6 1,391,038 + RS_RS06535 0.58 -0.4 1,391,175 + -1.0
Or see this region's nucleotide sequence