Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS06035 and RS_RS06040 are separated by 1 nucleotides RS_RS06040 and RS_RS06045 are separated by 8 nucleotides RS_RS06045 and RS_RS06050 are separated by 33 nucleotides
RS_RS06035: RS_RS06035 - protein-L-isoaspartate O-methyltransferase, at 1,273,674 to 1,274,639
_RS06035
RS_RS06040: RS_RS06040 - LysM peptidoglycan-binding domain-containing protein, at 1,274,641 to 1,275,468
_RS06040
RS_RS06045: RS_RS06045 - RNA polymerase sigma factor RpoS, at 1,275,477 to 1,276,610
_RS06045
RS_RS06050: RS_RS06050 - EEP domain-containing protein, at 1,276,644 to 1,277,513
_RS06050
Position (kb) 1275
1276
1277 Strain fitness (log2 ratio) -1
0
1
2
3 at 1274.638 kb on - strand at 1274.827 kb on + strand, within RS_RS06040 at 1274.858 kb on - strand, within RS_RS06040 at 1275.288 kb on + strand, within RS_RS06040 at 1275.288 kb on + strand, within RS_RS06040 at 1275.318 kb on + strand, within RS_RS06040 at 1275.318 kb on + strand, within RS_RS06040 at 1275.318 kb on + strand, within RS_RS06040 at 1275.319 kb on - strand, within RS_RS06040 at 1276.050 kb on + strand, within RS_RS06045 at 1276.050 kb on + strand, within RS_RS06045 at 1276.319 kb on + strand, within RS_RS06045 at 1276.438 kb on - strand, within RS_RS06045 at 1276.609 kb on - strand at 1277.086 kb on + strand, within RS_RS06050 at 1277.089 kb on + strand, within RS_RS06050 at 1277.090 kb on - strand, within RS_RS06050 at 1277.533 kb on - strand at 1277.533 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 1,274,638 - -0.7 1,274,827 + RS_RS06040 0.22 +0.9 1,274,858 - RS_RS06040 0.26 -0.5 1,275,288 + RS_RS06040 0.78 +0.9 1,275,288 + RS_RS06040 0.78 +1.0 1,275,318 + RS_RS06040 0.82 +0.6 1,275,318 + RS_RS06040 0.82 +1.0 1,275,318 + RS_RS06040 0.82 -0.8 1,275,319 - RS_RS06040 0.82 +2.3 1,276,050 + RS_RS06045 0.51 +3.0 1,276,050 + RS_RS06045 0.51 +3.1 1,276,319 + RS_RS06045 0.74 +2.9 1,276,438 - RS_RS06045 0.85 +3.5 1,276,609 - -0.4 1,277,086 + RS_RS06050 0.51 +0.2 1,277,089 + RS_RS06050 0.51 +0.1 1,277,090 - RS_RS06050 0.51 +1.1 1,277,533 - +0.0 1,277,533 - +0.8
Or see this region's nucleotide sequence