Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS06030 and RS_RS06035 are separated by 15 nucleotides RS_RS06035 and RS_RS06040 are separated by 1 nucleotides RS_RS06040 and RS_RS06045 are separated by 8 nucleotides
RS_RS06030: RS_RS06030 - 5'-nucleotidase SurE, at 1,272,903 to 1,273,658
_RS06030
RS_RS06035: RS_RS06035 - protein-L-isoaspartate O-methyltransferase, at 1,273,674 to 1,274,639
_RS06035
RS_RS06040: RS_RS06040 - LysM peptidoglycan-binding domain-containing protein, at 1,274,641 to 1,275,468
_RS06040
RS_RS06045: RS_RS06045 - RNA polymerase sigma factor RpoS, at 1,275,477 to 1,276,610
_RS06045
Position (kb) 1274
1275
1276 Strain fitness (log2 ratio) -1
0
1
2
3 at 1274.088 kb on + strand, within RS_RS06035 at 1274.298 kb on + strand, within RS_RS06035 at 1274.298 kb on + strand, within RS_RS06035 at 1274.638 kb on - strand at 1274.827 kb on + strand, within RS_RS06040 at 1274.858 kb on - strand, within RS_RS06040 at 1275.288 kb on + strand, within RS_RS06040 at 1275.288 kb on + strand, within RS_RS06040 at 1275.318 kb on + strand, within RS_RS06040 at 1275.318 kb on + strand, within RS_RS06040 at 1275.318 kb on + strand, within RS_RS06040 at 1275.319 kb on - strand, within RS_RS06040 at 1276.050 kb on + strand, within RS_RS06045 at 1276.050 kb on + strand, within RS_RS06045 at 1276.319 kb on + strand, within RS_RS06045 at 1276.438 kb on - strand, within RS_RS06045
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 1,274,088 + RS_RS06035 0.43 -1.2 1,274,298 + RS_RS06035 0.65 +0.2 1,274,298 + RS_RS06035 0.65 -0.2 1,274,638 - -0.7 1,274,827 + RS_RS06040 0.22 +0.9 1,274,858 - RS_RS06040 0.26 -0.5 1,275,288 + RS_RS06040 0.78 +0.9 1,275,288 + RS_RS06040 0.78 +1.0 1,275,318 + RS_RS06040 0.82 +0.6 1,275,318 + RS_RS06040 0.82 +1.0 1,275,318 + RS_RS06040 0.82 -0.8 1,275,319 - RS_RS06040 0.82 +2.3 1,276,050 + RS_RS06045 0.51 +3.0 1,276,050 + RS_RS06045 0.51 +3.1 1,276,319 + RS_RS06045 0.74 +2.9 1,276,438 - RS_RS06045 0.85 +3.5
Or see this region's nucleotide sequence