Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS06030

Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS06025 and RS_RS06030 are separated by 191 nucleotidesRS_RS06030 and RS_RS06035 are separated by 15 nucleotidesRS_RS06035 and RS_RS06040 are separated by 1 nucleotides RS_RS06025: RS_RS06025 - NADPH:quinone oxidoreductase family protein, at 1,271,737 to 1,272,711 _RS06025 RS_RS06030: RS_RS06030 - 5'-nucleotidase SurE, at 1,272,903 to 1,273,658 _RS06030 RS_RS06035: RS_RS06035 - protein-L-isoaspartate O-methyltransferase, at 1,273,674 to 1,274,639 _RS06035 RS_RS06040: RS_RS06040 - LysM peptidoglycan-binding domain-containing protein, at 1,274,641 to 1,275,468 _RS06040 Position (kb) 1272 1273 1274Strain fitness (log2 ratio) -2 -1 0 1at 1272.053 kb on + strand, within RS_RS06025at 1272.053 kb on + strand, within RS_RS06025at 1272.053 kb on + strand, within RS_RS06025at 1272.054 kb on - strand, within RS_RS06025at 1272.054 kb on - strand, within RS_RS06025at 1272.054 kb on - strand, within RS_RS06025at 1272.140 kb on + strand, within RS_RS06025at 1272.141 kb on - strand, within RS_RS06025at 1272.341 kb on + strand, within RS_RS06025at 1272.342 kb on - strand, within RS_RS06025at 1272.770 kb on + strandat 1272.891 kb on - strandat 1272.891 kb on - strandat 1272.908 kb on + strandat 1273.251 kb on + strand, within RS_RS06030at 1273.252 kb on - strand, within RS_RS06030at 1273.350 kb on + strand, within RS_RS06030at 1273.350 kb on + strand, within RS_RS06030at 1274.088 kb on + strand, within RS_RS06035at 1274.298 kb on + strand, within RS_RS06035at 1274.298 kb on + strand, within RS_RS06035at 1274.638 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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1,272,053 + RS_RS06025 0.32 +0.5
1,272,053 + RS_RS06025 0.32 +0.2
1,272,053 + RS_RS06025 0.32 +0.8
1,272,054 - RS_RS06025 0.33 +0.1
1,272,054 - RS_RS06025 0.33 -0.3
1,272,054 - RS_RS06025 0.33 -0.1
1,272,140 + RS_RS06025 0.41 -0.5
1,272,141 - RS_RS06025 0.41 -0.7
1,272,341 + RS_RS06025 0.62 -0.1
1,272,342 - RS_RS06025 0.62 -0.5
1,272,770 + -0.6
1,272,891 - -2.3
1,272,891 - +0.2
1,272,908 + +0.8
1,273,251 + RS_RS06030 0.46 +0.6
1,273,252 - RS_RS06030 0.46 -0.5
1,273,350 + RS_RS06030 0.59 -0.4
1,273,350 + RS_RS06030 0.59 -1.1
1,274,088 + RS_RS06035 0.43 -1.2
1,274,298 + RS_RS06035 0.65 +0.2
1,274,298 + RS_RS06035 0.65 -0.2
1,274,638 - -0.7

Or see this region's nucleotide sequence