Experiment: Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS04020 and RS_RS04025 are separated by 26 nucleotides RS_RS04025 and RS_RS04030 are separated by 9 nucleotides RS_RS04030 and RS_RS04035 are separated by 11 nucleotides
RS_RS04020: RS_RS04020 - TonB-dependent siderophore receptor, at 846,636 to 848,744
_RS04020
RS_RS04025: RS_RS04025 - hypothetical protein, at 848,771 to 849,481
_RS04025
RS_RS04030: RS_RS04030 - membrane protein, at 849,491 to 850,240
_RS04030
RS_RS04035: RS_RS04035 - serine protease, at 850,252 to 851,664
_RS04035
Position (kb) 849
850
851 Strain fitness (log2 ratio) -2
-1
0
1 at 848.518 kb on - strand, within RS_RS04020 at 848.518 kb on - strand, within RS_RS04020 at 848.963 kb on + strand, within RS_RS04025 at 849.164 kb on + strand, within RS_RS04025 at 849.165 kb on - strand, within RS_RS04025 at 849.165 kb on - strand, within RS_RS04025 at 849.165 kb on - strand, within RS_RS04025 at 849.330 kb on - strand, within RS_RS04025 at 849.493 kb on - strand at 849.972 kb on + strand, within RS_RS04030 at 849.972 kb on + strand, within RS_RS04030 at 849.972 kb on + strand, within RS_RS04030 at 850.113 kb on - strand, within RS_RS04030 at 850.233 kb on + strand at 850.233 kb on + strand at 850.234 kb on - strand at 850.234 kb on - strand at 850.234 kb on - strand at 850.234 kb on - strand at 850.234 kb on - strand at 850.234 kb on - strand at 850.244 kb on + strand at 850.718 kb on + strand, within RS_RS04035 at 850.718 kb on + strand, within RS_RS04035 at 850.719 kb on - strand, within RS_RS04035 at 850.745 kb on + strand, within RS_RS04035 at 850.746 kb on - strand, within RS_RS04035 at 850.826 kb on + strand, within RS_RS04035 at 850.827 kb on - strand, within RS_RS04035 at 850.827 kb on - strand, within RS_RS04035 at 850.932 kb on + strand, within RS_RS04035
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 848,518 - RS_RS04020 0.89 -1.2 848,518 - RS_RS04020 0.89 +0.0 848,963 + RS_RS04025 0.27 -2.6 849,164 + RS_RS04025 0.55 -0.1 849,165 - RS_RS04025 0.55 -0.0 849,165 - RS_RS04025 0.55 -0.3 849,165 - RS_RS04025 0.55 -0.1 849,330 - RS_RS04025 0.79 -1.0 849,493 - -0.8 849,972 + RS_RS04030 0.64 +0.1 849,972 + RS_RS04030 0.64 -0.3 849,972 + RS_RS04030 0.64 -0.6 850,113 - RS_RS04030 0.83 +0.2 850,233 + -0.7 850,233 + +0.3 850,234 - -0.2 850,234 - +0.0 850,234 - -0.2 850,234 - -1.5 850,234 - -0.0 850,234 - +1.1 850,244 + -0.9 850,718 + RS_RS04035 0.33 -0.2 850,718 + RS_RS04035 0.33 +1.0 850,719 - RS_RS04035 0.33 +0.8 850,745 + RS_RS04035 0.35 -0.7 850,746 - RS_RS04035 0.35 -0.1 850,826 + RS_RS04035 0.41 +0.3 850,827 - RS_RS04035 0.41 -0.7 850,827 - RS_RS04035 0.41 -0.6 850,932 + RS_RS04035 0.48 +0.6
Or see this region's nucleotide sequence