Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3220 and Pf6N2E2_3221 are separated by 207 nucleotides Pf6N2E2_3221 and Pf6N2E2_3222 are separated by 108 nucleotides Pf6N2E2_3222 and Pf6N2E2_3223 are separated by 29 nucleotides
Pf6N2E2_3220 - hypothetical protein, at 3,725,713 to 3,727,221
_3220
Pf6N2E2_3221 - FIG00352444: hypothetical protein, at 3,727,429 to 3,727,974
_3221
Pf6N2E2_3222 - Hydroxypyruvate isomerase (EC 5.3.1.22), at 3,728,083 to 3,728,844
_3222
Pf6N2E2_3223 - uncharacterized protein SCO0976, at 3,728,874 to 3,729,506
_3223
Position (kb)
3727
3728 Strain fitness (log2 ratio)
-2
-1
0
1 at 3726.495 kb on + strand, within Pf6N2E2_3220 at 3726.499 kb on + strand, within Pf6N2E2_3220 at 3726.500 kb on - strand, within Pf6N2E2_3220 at 3726.500 kb on - strand, within Pf6N2E2_3220 at 3726.703 kb on + strand, within Pf6N2E2_3220 at 3726.704 kb on - strand, within Pf6N2E2_3220 at 3726.704 kb on - strand, within Pf6N2E2_3220 at 3726.704 kb on - strand, within Pf6N2E2_3220 at 3726.705 kb on + strand, within Pf6N2E2_3220 at 3726.705 kb on + strand, within Pf6N2E2_3220 at 3726.706 kb on - strand, within Pf6N2E2_3220 at 3726.706 kb on - strand, within Pf6N2E2_3220 at 3726.727 kb on + strand, within Pf6N2E2_3220 at 3726.881 kb on + strand, within Pf6N2E2_3220 at 3726.882 kb on - strand, within Pf6N2E2_3220 at 3726.927 kb on + strand, within Pf6N2E2_3220 at 3726.927 kb on + strand, within Pf6N2E2_3220 at 3726.927 kb on + strand, within Pf6N2E2_3220 at 3726.928 kb on - strand, within Pf6N2E2_3220 at 3726.928 kb on - strand, within Pf6N2E2_3220 at 3727.005 kb on + strand, within Pf6N2E2_3220 at 3727.005 kb on + strand, within Pf6N2E2_3220 at 3727.006 kb on - strand, within Pf6N2E2_3220 at 3727.006 kb on - strand, within Pf6N2E2_3220 at 3727.080 kb on + strand at 3727.081 kb on - strand at 3727.130 kb on - strand at 3727.314 kb on + strand at 3727.315 kb on - strand at 3727.469 kb on + strand at 3727.470 kb on - strand at 3727.470 kb on - strand at 3727.491 kb on - strand, within Pf6N2E2_3221 at 3727.718 kb on + strand, within Pf6N2E2_3221 at 3727.718 kb on + strand, within Pf6N2E2_3221 at 3727.719 kb on - strand, within Pf6N2E2_3221 at 3728.027 kb on + strand at 3728.027 kb on + strand at 3728.031 kb on + strand at 3728.031 kb on + strand at 3728.031 kb on + strand at 3728.031 kb on + strand at 3728.031 kb on + strand at 3728.032 kb on - strand at 3728.032 kb on - strand at 3728.032 kb on - strand at 3728.036 kb on + strand at 3728.043 kb on - strand at 3728.125 kb on - strand at 3728.273 kb on + strand, within Pf6N2E2_3222 at 3728.273 kb on + strand, within Pf6N2E2_3222 at 3728.325 kb on - strand, within Pf6N2E2_3222 at 3728.396 kb on + strand, within Pf6N2E2_3222 at 3728.396 kb on + strand, within Pf6N2E2_3222 at 3728.396 kb on + strand, within Pf6N2E2_3222 at 3728.396 kb on + strand, within Pf6N2E2_3222 at 3728.396 kb on + strand, within Pf6N2E2_3222 at 3728.396 kb on + strand, within Pf6N2E2_3222 at 3728.396 kb on + strand, within Pf6N2E2_3222 at 3728.396 kb on + strand, within Pf6N2E2_3222 at 3728.396 kb on + strand, within Pf6N2E2_3222 at 3728.396 kb on + strand, within Pf6N2E2_3222 at 3728.397 kb on - strand, within Pf6N2E2_3222 at 3728.397 kb on - strand, within Pf6N2E2_3222 at 3728.397 kb on - strand, within Pf6N2E2_3222 at 3728.397 kb on - strand, within Pf6N2E2_3222 at 3728.397 kb on - strand, within Pf6N2E2_3222 at 3728.397 kb on - strand, within Pf6N2E2_3222 at 3728.397 kb on - strand, within Pf6N2E2_3222 at 3728.397 kb on - strand, within Pf6N2E2_3222 at 3728.399 kb on + strand, within Pf6N2E2_3222 at 3728.399 kb on + strand, within Pf6N2E2_3222 at 3728.399 kb on + strand, within Pf6N2E2_3222 at 3728.399 kb on + strand, within Pf6N2E2_3222 at 3728.399 kb on + strand, within Pf6N2E2_3222 at 3728.399 kb on + strand, within Pf6N2E2_3222 at 3728.400 kb on - strand, within Pf6N2E2_3222 at 3728.400 kb on - strand, within Pf6N2E2_3222 at 3728.462 kb on + strand, within Pf6N2E2_3222 at 3728.462 kb on + strand, within Pf6N2E2_3222 at 3728.474 kb on + strand, within Pf6N2E2_3222 at 3728.493 kb on - strand, within Pf6N2E2_3222 at 3728.496 kb on + strand, within Pf6N2E2_3222 at 3728.497 kb on - strand, within Pf6N2E2_3222 at 3728.497 kb on - strand, within Pf6N2E2_3222 at 3728.676 kb on + strand, within Pf6N2E2_3222 at 3728.676 kb on + strand, within Pf6N2E2_3222 at 3728.676 kb on + strand, within Pf6N2E2_3222 at 3728.677 kb on - strand, within Pf6N2E2_3222 at 3728.677 kb on - strand, within Pf6N2E2_3222 at 3728.677 kb on - strand, within Pf6N2E2_3222 at 3728.677 kb on - strand, within Pf6N2E2_3222 at 3728.720 kb on + strand, within Pf6N2E2_3222 at 3728.720 kb on + strand, within Pf6N2E2_3222 at 3728.779 kb on + strand at 3728.837 kb on + strand at 3728.876 kb on - strand at 3728.876 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 3,726,495 + Pf6N2E2_3220 0.52 +0.5 3,726,499 + Pf6N2E2_3220 0.52 +0.1 3,726,500 - Pf6N2E2_3220 0.52 +0.2 3,726,500 - Pf6N2E2_3220 0.52 +0.6 3,726,703 + Pf6N2E2_3220 0.66 -0.3 3,726,704 - Pf6N2E2_3220 0.66 -0.8 3,726,704 - Pf6N2E2_3220 0.66 -0.3 3,726,704 - Pf6N2E2_3220 0.66 +0.5 3,726,705 + Pf6N2E2_3220 0.66 +1.2 3,726,705 + Pf6N2E2_3220 0.66 -0.7 3,726,706 - Pf6N2E2_3220 0.66 +0.4 3,726,706 - Pf6N2E2_3220 0.66 +0.2 3,726,727 + Pf6N2E2_3220 0.67 -0.4 3,726,881 + Pf6N2E2_3220 0.77 +0.2 3,726,882 - Pf6N2E2_3220 0.77 +0.6 3,726,927 + Pf6N2E2_3220 0.80 +0.6 3,726,927 + Pf6N2E2_3220 0.80 -0.7 3,726,927 + Pf6N2E2_3220 0.80 -0.2 3,726,928 - Pf6N2E2_3220 0.81 +0.8 3,726,928 - Pf6N2E2_3220 0.81 +0.6 3,727,005 + Pf6N2E2_3220 0.86 -0.1 3,727,005 + Pf6N2E2_3220 0.86 -0.8 3,727,006 - Pf6N2E2_3220 0.86 +0.6 3,727,006 - Pf6N2E2_3220 0.86 +0.2 3,727,080 + +0.1 3,727,081 - -0.1 3,727,130 - +0.9 3,727,314 + +0.0 3,727,315 - -0.3 3,727,469 + +0.5 3,727,470 - -0.5 3,727,470 - +0.3 3,727,491 - Pf6N2E2_3221 0.11 +0.2 3,727,718 + Pf6N2E2_3221 0.53 -1.0 3,727,718 + Pf6N2E2_3221 0.53 -1.2 3,727,719 - Pf6N2E2_3221 0.53 -0.8 3,728,027 + +1.3 3,728,027 + -0.0 3,728,031 + +0.1 3,728,031 + +0.7 3,728,031 + +0.1 3,728,031 + +1.1 3,728,031 + -0.0 3,728,032 - +0.4 3,728,032 - -0.4 3,728,032 - +0.1 3,728,036 + +0.5 3,728,043 - -0.2 3,728,125 - -0.4 3,728,273 + Pf6N2E2_3222 0.25 -0.8 3,728,273 + Pf6N2E2_3222 0.25 +0.2 3,728,325 - Pf6N2E2_3222 0.32 +0.4 3,728,396 + Pf6N2E2_3222 0.41 +0.1 3,728,396 + Pf6N2E2_3222 0.41 -0.4 3,728,396 + Pf6N2E2_3222 0.41 +0.2 3,728,396 + Pf6N2E2_3222 0.41 +0.6 3,728,396 + Pf6N2E2_3222 0.41 +0.6 3,728,396 + Pf6N2E2_3222 0.41 +0.3 3,728,396 + Pf6N2E2_3222 0.41 +0.4 3,728,396 + Pf6N2E2_3222 0.41 -0.6 3,728,396 + Pf6N2E2_3222 0.41 -0.5 3,728,396 + Pf6N2E2_3222 0.41 +0.8 3,728,397 - Pf6N2E2_3222 0.41 -0.1 3,728,397 - Pf6N2E2_3222 0.41 +0.3 3,728,397 - Pf6N2E2_3222 0.41 +0.7 3,728,397 - Pf6N2E2_3222 0.41 -0.3 3,728,397 - Pf6N2E2_3222 0.41 +0.4 3,728,397 - Pf6N2E2_3222 0.41 -0.5 3,728,397 - Pf6N2E2_3222 0.41 -0.1 3,728,397 - Pf6N2E2_3222 0.41 -0.0 3,728,399 + Pf6N2E2_3222 0.41 -0.3 3,728,399 + Pf6N2E2_3222 0.41 -0.5 3,728,399 + Pf6N2E2_3222 0.41 -0.6 3,728,399 + Pf6N2E2_3222 0.41 +0.3 3,728,399 + Pf6N2E2_3222 0.41 -0.0 3,728,399 + Pf6N2E2_3222 0.41 -0.5 3,728,400 - Pf6N2E2_3222 0.42 +0.1 3,728,400 - Pf6N2E2_3222 0.42 -0.4 3,728,462 + Pf6N2E2_3222 0.50 +0.6 3,728,462 + Pf6N2E2_3222 0.50 +0.6 3,728,474 + Pf6N2E2_3222 0.51 +0.3 3,728,493 - Pf6N2E2_3222 0.54 +0.2 3,728,496 + Pf6N2E2_3222 0.54 -0.1 3,728,497 - Pf6N2E2_3222 0.54 -0.1 3,728,497 - Pf6N2E2_3222 0.54 -0.6 3,728,676 + Pf6N2E2_3222 0.78 +0.5 3,728,676 + Pf6N2E2_3222 0.78 +1.1 3,728,676 + Pf6N2E2_3222 0.78 +1.2 3,728,677 - Pf6N2E2_3222 0.78 -0.1 3,728,677 - Pf6N2E2_3222 0.78 -0.2 3,728,677 - Pf6N2E2_3222 0.78 +0.7 3,728,677 - Pf6N2E2_3222 0.78 +1.2 3,728,720 + Pf6N2E2_3222 0.84 -1.2 3,728,720 + Pf6N2E2_3222 0.84 +1.0 3,728,779 + -1.6 3,728,837 + +1.0 3,728,876 - -2.0 3,728,876 - +0.8
Or see this region's nucleotide sequence