Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03763 and CCNA_03764 are separated by 81 nucleotides CCNA_03764 and CCNA_03765 are separated by 3 nucleotides CCNA_03765 and CCNA_03766 are separated by 23 nucleotides CCNA_03766 and CCNA_03767 are separated by 56 nucleotides
CCNA_03763: CCNA_03763 - deacetylase, at 3,931,762 to 3,932,676
_03763
CCNA_03764: CCNA_03764 - acyl-CoA thioesterase, at 3,932,758 to 3,933,612
_03764
CCNA_03765: CCNA_03765 - phosphohydrolase, MutT/nudix family protein, at 3,933,616 to 3,934,179
_03765
CCNA_03766: CCNA_03766 - 16S rRNA processing protein RimM, at 3,934,203 to 3,934,784
_03766
CCNA_03767: CCNA_03767 - SSU ribosomal protein S16P, at 3,934,841 to 3,935,338
_03767
Position (kb)
3933
3934
3935 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3932.640 kb on + strand at 3932.679 kb on - strand at 3932.683 kb on + strand at 3932.719 kb on + strand at 3932.741 kb on + strand at 3932.758 kb on + strand at 3932.761 kb on - strand at 3932.767 kb on + strand at 3932.767 kb on + strand at 3932.767 kb on + strand at 3932.775 kb on - strand at 3932.802 kb on + strand at 3932.825 kb on - strand at 3932.825 kb on - strand at 3932.895 kb on + strand, within CCNA_03764 at 3932.895 kb on + strand, within CCNA_03764 at 3932.913 kb on - strand, within CCNA_03764 at 3932.921 kb on + strand, within CCNA_03764 at 3932.927 kb on - strand, within CCNA_03764 at 3932.965 kb on + strand, within CCNA_03764 at 3932.976 kb on - strand, within CCNA_03764 at 3933.029 kb on + strand, within CCNA_03764 at 3933.053 kb on + strand, within CCNA_03764 at 3933.072 kb on + strand, within CCNA_03764 at 3933.102 kb on + strand, within CCNA_03764 at 3933.119 kb on + strand, within CCNA_03764 at 3933.162 kb on - strand, within CCNA_03764 at 3933.180 kb on + strand, within CCNA_03764 at 3933.296 kb on - strand, within CCNA_03764 at 3933.351 kb on - strand, within CCNA_03764 at 3933.351 kb on - strand, within CCNA_03764 at 3933.356 kb on - strand, within CCNA_03764 at 3933.361 kb on + strand, within CCNA_03764 at 3933.367 kb on + strand, within CCNA_03764 at 3933.369 kb on - strand, within CCNA_03764 at 3933.400 kb on - strand, within CCNA_03764 at 3933.402 kb on + strand, within CCNA_03764 at 3933.402 kb on + strand, within CCNA_03764 at 3933.410 kb on - strand, within CCNA_03764 at 3933.410 kb on - strand, within CCNA_03764 at 3933.410 kb on - strand, within CCNA_03764 at 3933.410 kb on - strand, within CCNA_03764 at 3933.438 kb on + strand, within CCNA_03764 at 3933.441 kb on - strand, within CCNA_03764 at 3933.496 kb on - strand, within CCNA_03764 at 3933.501 kb on - strand, within CCNA_03764 at 3933.501 kb on - strand, within CCNA_03764 at 3933.501 kb on - strand, within CCNA_03764 at 3933.503 kb on + strand, within CCNA_03764 at 3933.504 kb on + strand, within CCNA_03764 at 3933.521 kb on + strand, within CCNA_03764 at 3933.570 kb on + strand at 3933.573 kb on - strand at 3933.573 kb on - strand at 3933.614 kb on + strand at 3933.621 kb on - strand at 3933.622 kb on - strand at 3933.622 kb on - strand at 3933.668 kb on + strand at 3933.681 kb on - strand, within CCNA_03765 at 3933.700 kb on + strand, within CCNA_03765 at 3933.700 kb on + strand, within CCNA_03765 at 3933.708 kb on - strand, within CCNA_03765 at 3933.708 kb on - strand, within CCNA_03765 at 3933.735 kb on + strand, within CCNA_03765 at 3933.736 kb on - strand, within CCNA_03765 at 3933.772 kb on + strand, within CCNA_03765 at 3933.775 kb on - strand, within CCNA_03765 at 3933.799 kb on + strand, within CCNA_03765 at 3933.861 kb on + strand, within CCNA_03765 at 3933.861 kb on + strand, within CCNA_03765 at 3933.869 kb on - strand, within CCNA_03765 at 3933.921 kb on + strand, within CCNA_03765 at 3933.926 kb on + strand, within CCNA_03765 at 3933.970 kb on - strand, within CCNA_03765 at 3933.986 kb on - strand, within CCNA_03765 at 3934.043 kb on - strand, within CCNA_03765 at 3934.054 kb on + strand, within CCNA_03765 at 3934.054 kb on + strand, within CCNA_03765 at 3934.054 kb on + strand, within CCNA_03765 at 3934.054 kb on + strand, within CCNA_03765 at 3934.061 kb on + strand, within CCNA_03765 at 3934.062 kb on - strand, within CCNA_03765 at 3934.067 kb on - strand, within CCNA_03765 at 3934.069 kb on - strand, within CCNA_03765 at 3934.072 kb on + strand, within CCNA_03765 at 3934.074 kb on - strand, within CCNA_03765 at 3934.120 kb on + strand, within CCNA_03765 at 3934.201 kb on + strand at 3934.201 kb on + strand at 3934.209 kb on - strand at 3934.209 kb on - strand at 3934.228 kb on - strand at 3934.250 kb on - strand at 3934.250 kb on - strand at 3934.282 kb on + strand, within CCNA_03766 at 3934.301 kb on - strand at 3934.780 kb on + strand at 3934.790 kb on + strand at 3934.793 kb on - strand at 3934.793 kb on - strand at 3934.808 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 3,932,640 + +1.6 3,932,679 - -1.1 3,932,683 + -0.0 3,932,719 + -1.2 3,932,741 + +0.2 3,932,758 + +1.9 3,932,761 - +0.2 3,932,767 + -0.6 3,932,767 + +1.0 3,932,767 + +1.2 3,932,775 - -0.7 3,932,802 + +1.0 3,932,825 - -0.6 3,932,825 - -0.3 3,932,895 + CCNA_03764 0.16 -3.1 3,932,895 + CCNA_03764 0.16 +0.6 3,932,913 - CCNA_03764 0.18 +0.2 3,932,921 + CCNA_03764 0.19 +0.6 3,932,927 - CCNA_03764 0.20 +4.2 3,932,965 + CCNA_03764 0.24 +1.3 3,932,976 - CCNA_03764 0.25 -1.4 3,933,029 + CCNA_03764 0.32 +0.6 3,933,053 + CCNA_03764 0.35 +1.7 3,933,072 + CCNA_03764 0.37 +0.9 3,933,102 + CCNA_03764 0.40 +0.8 3,933,119 + CCNA_03764 0.42 +0.6 3,933,162 - CCNA_03764 0.47 +1.4 3,933,180 + CCNA_03764 0.49 +0.6 3,933,296 - CCNA_03764 0.63 +0.8 3,933,351 - CCNA_03764 0.69 +0.6 3,933,351 - CCNA_03764 0.69 +0.3 3,933,356 - CCNA_03764 0.70 +0.6 3,933,361 + CCNA_03764 0.71 +1.2 3,933,367 + CCNA_03764 0.71 +0.8 3,933,369 - CCNA_03764 0.71 +0.0 3,933,400 - CCNA_03764 0.75 +0.4 3,933,402 + CCNA_03764 0.75 +0.4 3,933,402 + CCNA_03764 0.75 +0.7 3,933,410 - CCNA_03764 0.76 +0.6 3,933,410 - CCNA_03764 0.76 -1.6 3,933,410 - CCNA_03764 0.76 -0.9 3,933,410 - CCNA_03764 0.76 -0.8 3,933,438 + CCNA_03764 0.80 +0.1 3,933,441 - CCNA_03764 0.80 +0.6 3,933,496 - CCNA_03764 0.86 -0.0 3,933,501 - CCNA_03764 0.87 +1.3 3,933,501 - CCNA_03764 0.87 +0.6 3,933,501 - CCNA_03764 0.87 -1.7 3,933,503 + CCNA_03764 0.87 +1.0 3,933,504 + CCNA_03764 0.87 +2.6 3,933,521 + CCNA_03764 0.89 +0.4 3,933,570 + -0.1 3,933,573 - -0.4 3,933,573 - +1.0 3,933,614 + +1.2 3,933,621 - +0.7 3,933,622 - +0.5 3,933,622 - +0.8 3,933,668 + +1.1 3,933,681 - CCNA_03765 0.12 +2.0 3,933,700 + CCNA_03765 0.15 +1.3 3,933,700 + CCNA_03765 0.15 +0.9 3,933,708 - CCNA_03765 0.16 +0.4 3,933,708 - CCNA_03765 0.16 +0.5 3,933,735 + CCNA_03765 0.21 +1.0 3,933,736 - CCNA_03765 0.21 -0.2 3,933,772 + CCNA_03765 0.28 +0.9 3,933,775 - CCNA_03765 0.28 -0.2 3,933,799 + CCNA_03765 0.32 +0.9 3,933,861 + CCNA_03765 0.43 +0.2 3,933,861 + CCNA_03765 0.43 +0.9 3,933,869 - CCNA_03765 0.45 +0.4 3,933,921 + CCNA_03765 0.54 +1.8 3,933,926 + CCNA_03765 0.55 +0.2 3,933,970 - CCNA_03765 0.63 +0.8 3,933,986 - CCNA_03765 0.66 +0.4 3,934,043 - CCNA_03765 0.76 +0.4 3,934,054 + CCNA_03765 0.78 -0.2 3,934,054 + CCNA_03765 0.78 -0.4 3,934,054 + CCNA_03765 0.78 +0.1 3,934,054 + CCNA_03765 0.78 -1.5 3,934,061 + CCNA_03765 0.79 +0.4 3,934,062 - CCNA_03765 0.79 +0.7 3,934,067 - CCNA_03765 0.80 +1.4 3,934,069 - CCNA_03765 0.80 +0.9 3,934,072 + CCNA_03765 0.81 -1.6 3,934,074 - CCNA_03765 0.81 +4.4 3,934,120 + CCNA_03765 0.89 -1.4 3,934,201 + -0.6 3,934,201 + -1.3 3,934,209 - +0.6 3,934,209 - +1.0 3,934,228 - +0.9 3,934,250 - +1.0 3,934,250 - +1.0 3,934,282 + CCNA_03766 0.14 +2.0 3,934,301 - -1.2 3,934,780 + -0.3 3,934,790 + +0.4 3,934,793 - +0.1 3,934,793 - +1.3 3,934,808 - +1.4
Or see this region's nucleotide sequence