Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02343

Experiment: Cytidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02342 and CCNA_02343 are separated by 102 nucleotidesCCNA_02343 and CCNA_02344 are separated by 92 nucleotidesCCNA_02344 and CCNA_02345 are separated by 160 nucleotides CCNA_02342: CCNA_02342 - hypothetical protein with pentapeptide repeats, at 2,481,416 to 2,482,681 _02342 CCNA_02343: CCNA_02343 - hypothetical protein with pentapeptide repeats, at 2,482,784 to 2,484,043 _02343 CCNA_02344: CCNA_02344 - phosphoglycerate mutase, at 2,484,136 to 2,484,849 _02344 CCNA_02345: CCNA_02345 - hypothetical protein, at 2,485,010 to 2,485,225 _02345 Position (kb) 2482 2483 2484 2485Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2481.825 kb on + strand, within CCNA_02342at 2481.825 kb on + strand, within CCNA_02342at 2481.825 kb on + strand, within CCNA_02342at 2481.825 kb on + strand, within CCNA_02342at 2481.825 kb on - strand, within CCNA_02342at 2481.825 kb on - strand, within CCNA_02342at 2481.833 kb on - strand, within CCNA_02342at 2481.833 kb on - strand, within CCNA_02342at 2481.833 kb on - strand, within CCNA_02342at 2481.833 kb on - strand, within CCNA_02342at 2481.833 kb on - strand, within CCNA_02342at 2481.833 kb on - strand, within CCNA_02342at 2481.833 kb on - strand, within CCNA_02342at 2481.869 kb on - strand, within CCNA_02342at 2481.937 kb on - strand, within CCNA_02342at 2481.949 kb on + strand, within CCNA_02342at 2481.950 kb on + strand, within CCNA_02342at 2481.950 kb on + strand, within CCNA_02342at 2481.958 kb on - strand, within CCNA_02342at 2481.958 kb on - strand, within CCNA_02342at 2481.980 kb on + strand, within CCNA_02342at 2481.994 kb on - strand, within CCNA_02342at 2481.999 kb on + strand, within CCNA_02342at 2481.999 kb on + strand, within CCNA_02342at 2481.999 kb on + strand, within CCNA_02342at 2481.999 kb on + strand, within CCNA_02342at 2481.999 kb on + strandat 2482.014 kb on + strand, within CCNA_02342at 2482.039 kb on - strand, within CCNA_02342at 2482.059 kb on - strand, within CCNA_02342at 2482.060 kb on - strand, within CCNA_02342at 2482.083 kb on - strand, within CCNA_02342at 2482.091 kb on + strand, within CCNA_02342at 2482.091 kb on + strand, within CCNA_02342at 2482.111 kb on + strand, within CCNA_02342at 2482.119 kb on + strand, within CCNA_02342at 2482.131 kb on + strand, within CCNA_02342at 2482.142 kb on - strand, within CCNA_02342at 2482.194 kb on + strand, within CCNA_02342at 2482.194 kb on + strand, within CCNA_02342at 2482.202 kb on - strand, within CCNA_02342at 2482.202 kb on - strand, within CCNA_02342at 2482.250 kb on + strand, within CCNA_02342at 2482.258 kb on - strand, within CCNA_02342at 2482.294 kb on - strand, within CCNA_02342at 2482.324 kb on + strand, within CCNA_02342at 2482.334 kb on + strand, within CCNA_02342at 2482.341 kb on - strand, within CCNA_02342at 2482.342 kb on - strand, within CCNA_02342at 2482.342 kb on - strand, within CCNA_02342at 2482.342 kb on - strand, within CCNA_02342at 2482.342 kb on - strand, within CCNA_02342at 2482.344 kb on + strand, within CCNA_02342at 2482.352 kb on - strand, within CCNA_02342at 2482.369 kb on + strand, within CCNA_02342at 2482.384 kb on + strand, within CCNA_02342at 2482.392 kb on - strand, within CCNA_02342at 2482.396 kb on - strand, within CCNA_02342at 2482.402 kb on - strand, within CCNA_02342at 2482.429 kb on + strand, within CCNA_02342at 2482.456 kb on - strand, within CCNA_02342at 2482.472 kb on - strand, within CCNA_02342at 2482.517 kb on - strand, within CCNA_02342at 2482.628 kb on - strandat 2482.634 kb on + strandat 2482.659 kb on + strandat 2482.665 kb on - strandat 2482.667 kb on - strandat 2482.724 kb on + strandat 2482.724 kb on + strandat 2482.724 kb on + strandat 2482.724 kb on + strandat 2482.732 kb on - strandat 2482.732 kb on - strandat 2482.732 kb on - strandat 2482.732 kb on - strandat 2482.732 kb on - strandat 2482.732 kb on - strandat 2482.732 kb on - strandat 2482.749 kb on + strandat 2482.757 kb on - strandat 2482.767 kb on - strandat 2482.795 kb on + strandat 2482.795 kb on + strandat 2482.803 kb on - strandat 2482.834 kb on + strandat 2482.837 kb on - strandat 2482.837 kb on - strandat 2482.857 kb on + strandat 2482.923 kb on + strand, within CCNA_02343at 2482.939 kb on + strand, within CCNA_02343at 2482.949 kb on + strand, within CCNA_02343at 2482.992 kb on + strand, within CCNA_02343at 2482.992 kb on + strand, within CCNA_02343at 2482.994 kb on + strand, within CCNA_02343at 2483.000 kb on - strand, within CCNA_02343at 2483.014 kb on + strand, within CCNA_02343at 2483.014 kb on + strand, within CCNA_02343at 2483.022 kb on - strand, within CCNA_02343at 2483.022 kb on - strand, within CCNA_02343at 2483.037 kb on + strand, within CCNA_02343at 2483.037 kb on + strand, within CCNA_02343at 2483.039 kb on + strand, within CCNA_02343at 2483.039 kb on + strand, within CCNA_02343at 2483.045 kb on - strand, within CCNA_02343at 2483.045 kb on - strand, within CCNA_02343at 2483.045 kb on - strand, within CCNA_02343at 2483.045 kb on - strand, within CCNA_02343at 2483.060 kb on - strand, within CCNA_02343at 2483.064 kb on + strand, within CCNA_02343at 2483.074 kb on + strand, within CCNA_02343at 2483.105 kb on - strand, within CCNA_02343at 2483.107 kb on - strand, within CCNA_02343at 2483.142 kb on + strand, within CCNA_02343at 2483.144 kb on + strand, within CCNA_02343at 2483.150 kb on - strand, within CCNA_02343at 2483.152 kb on - strand, within CCNA_02343at 2483.186 kb on + strand, within CCNA_02343at 2483.186 kb on + strand, within CCNA_02343at 2483.229 kb on + strand, within CCNA_02343at 2483.230 kb on - strand, within CCNA_02343at 2483.236 kb on - strand, within CCNA_02343at 2483.242 kb on - strand, within CCNA_02343at 2483.263 kb on - strand, within CCNA_02343at 2483.288 kb on - strand, within CCNA_02343at 2483.310 kb on - strand, within CCNA_02343at 2483.321 kb on - strand, within CCNA_02343at 2483.367 kb on + strand, within CCNA_02343at 2483.367 kb on + strand, within CCNA_02343at 2483.372 kb on + strand, within CCNA_02343at 2483.372 kb on + strand, within CCNA_02343at 2483.375 kb on - strand, within CCNA_02343at 2483.379 kb on + strand, within CCNA_02343at 2483.385 kb on + strand, within CCNA_02343at 2483.385 kb on + strand, within CCNA_02343at 2483.387 kb on - strand, within CCNA_02343at 2483.393 kb on - strand, within CCNA_02343at 2483.393 kb on - strand, within CCNA_02343at 2483.400 kb on + strand, within CCNA_02343at 2483.403 kb on - strand, within CCNA_02343at 2483.405 kb on + strand, within CCNA_02343at 2483.408 kb on - strand, within CCNA_02343at 2483.410 kb on + strand, within CCNA_02343at 2483.410 kb on + strand, within CCNA_02343at 2483.413 kb on - strand, within CCNA_02343at 2483.413 kb on - strand, within CCNA_02343at 2483.413 kb on - strand, within CCNA_02343at 2483.418 kb on - strand, within CCNA_02343at 2483.418 kb on - strand, within CCNA_02343at 2483.418 kb on - strand, within CCNA_02343at 2483.420 kb on + strand, within CCNA_02343at 2483.440 kb on + strand, within CCNA_02343at 2483.479 kb on + strand, within CCNA_02343at 2483.479 kb on + strand, within CCNA_02343at 2483.479 kb on + strandat 2483.487 kb on - strand, within CCNA_02343at 2483.487 kb on - strand, within CCNA_02343at 2483.487 kb on - strand, within CCNA_02343at 2483.487 kb on - strand, within CCNA_02343at 2483.498 kb on - strand, within CCNA_02343at 2483.510 kb on + strand, within CCNA_02343at 2483.510 kb on + strandat 2483.510 kb on + strand, within CCNA_02343at 2483.518 kb on - strand, within CCNA_02343at 2483.518 kb on - strand, within CCNA_02343at 2483.531 kb on - strand, within CCNA_02343at 2483.577 kb on - strand, within CCNA_02343at 2483.590 kb on + strand, within CCNA_02343at 2483.598 kb on - strand, within CCNA_02343at 2483.609 kb on + strand, within CCNA_02343at 2483.617 kb on - strand, within CCNA_02343at 2483.698 kb on + strand, within CCNA_02343at 2483.708 kb on + strand, within CCNA_02343at 2483.713 kb on + strand, within CCNA_02343at 2483.721 kb on - strand, within CCNA_02343at 2483.721 kb on - strand, within CCNA_02343at 2483.728 kb on + strand, within CCNA_02343at 2483.736 kb on - strand, within CCNA_02343at 2483.736 kb on - strand, within CCNA_02343at 2483.738 kb on + strand, within CCNA_02343at 2483.751 kb on - strand, within CCNA_02343at 2483.751 kb on - strand, within CCNA_02343at 2483.773 kb on + strand, within CCNA_02343at 2483.783 kb on + strand, within CCNA_02343at 2483.796 kb on + strand, within CCNA_02343at 2483.796 kb on + strand, within CCNA_02343at 2483.804 kb on - strand, within CCNA_02343at 2483.833 kb on + strand, within CCNA_02343at 2483.843 kb on + strand, within CCNA_02343at 2483.866 kb on - strand, within CCNA_02343at 2483.902 kb on - strand, within CCNA_02343at 2483.907 kb on - strand, within CCNA_02343at 2483.937 kb on + strandat 2483.945 kb on - strandat 2483.961 kb on + strandat 2483.963 kb on + strandat 2483.963 kb on + strandat 2483.971 kb on - strandat 2483.988 kb on + strandat 2483.996 kb on - strandat 2484.082 kb on - strandat 2484.141 kb on - strandat 2484.153 kb on - strandat 2484.179 kb on - strandat 2484.894 kb on - strandat 2484.894 kb on - strandat 2484.894 kb on - strandat 2484.900 kb on - strandat 2484.922 kb on - strandat 2484.963 kb on - strandat 2484.967 kb on - strandat 2484.967 kb on - strandat 2484.968 kb on - strandat 2484.977 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
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2,481,825 + CCNA_02342 0.32 -2.1
2,481,825 + CCNA_02342 0.32 +1.2
2,481,825 + CCNA_02342 0.32 +1.0
2,481,825 + CCNA_02342 0.32 +1.4
2,481,825 - CCNA_02342 0.32 +1.4
2,481,825 - CCNA_02342 0.32 +0.4
2,481,833 - CCNA_02342 0.33 +0.5
2,481,833 - CCNA_02342 0.33 +1.5
2,481,833 - CCNA_02342 0.33 +0.7
2,481,833 - CCNA_02342 0.33 +1.2
2,481,833 - CCNA_02342 0.33 +0.4
2,481,833 - CCNA_02342 0.33 -0.3
2,481,833 - CCNA_02342 0.33 +1.2
2,481,869 - CCNA_02342 0.36 +1.2
2,481,937 - CCNA_02342 0.41 +1.4
2,481,949 + CCNA_02342 0.42 -1.3
2,481,950 + CCNA_02342 0.42 -2.5
2,481,950 + CCNA_02342 0.42 +0.0
2,481,958 - CCNA_02342 0.43 -0.3
2,481,958 - CCNA_02342 0.43 +0.0
2,481,980 + CCNA_02342 0.45 +0.9
2,481,994 - CCNA_02342 0.46 +1.4
2,481,999 + CCNA_02342 0.46 -1.0
2,481,999 + CCNA_02342 0.46 +0.2
2,481,999 + CCNA_02342 0.46 +1.6
2,481,999 + CCNA_02342 0.46 +0.5
2,481,999 + +3.4
2,482,014 + CCNA_02342 0.47 -1.1
2,482,039 - CCNA_02342 0.49 +0.6
2,482,059 - CCNA_02342 0.51 +0.4
2,482,060 - CCNA_02342 0.51 +1.0
2,482,083 - CCNA_02342 0.53 +0.7
2,482,091 + CCNA_02342 0.53 -0.7
2,482,091 + CCNA_02342 0.53 +0.3
2,482,111 + CCNA_02342 0.55 -0.4
2,482,119 + CCNA_02342 0.56 -0.3
2,482,131 + CCNA_02342 0.56 -0.1
2,482,142 - CCNA_02342 0.57 +1.0
2,482,194 + CCNA_02342 0.61 -0.4
2,482,194 + CCNA_02342 0.61 +1.3
2,482,202 - CCNA_02342 0.62 +0.8
2,482,202 - CCNA_02342 0.62 +1.0
2,482,250 + CCNA_02342 0.66 +1.9
2,482,258 - CCNA_02342 0.67 +0.6
2,482,294 - CCNA_02342 0.69 +0.7
2,482,324 + CCNA_02342 0.72 +0.8
2,482,334 + CCNA_02342 0.73 -0.0
2,482,341 - CCNA_02342 0.73 +0.7
2,482,342 - CCNA_02342 0.73 +1.7
2,482,342 - CCNA_02342 0.73 +0.9
2,482,342 - CCNA_02342 0.73 +0.6
2,482,342 - CCNA_02342 0.73 +1.0
2,482,344 + CCNA_02342 0.73 +1.0
2,482,352 - CCNA_02342 0.74 +2.1
2,482,369 + CCNA_02342 0.75 -1.2
2,482,384 + CCNA_02342 0.76 -1.2
2,482,392 - CCNA_02342 0.77 +0.7
2,482,396 - CCNA_02342 0.77 +1.0
2,482,402 - CCNA_02342 0.78 +1.1
2,482,429 + CCNA_02342 0.80 +1.7
2,482,456 - CCNA_02342 0.82 -2.0
2,482,472 - CCNA_02342 0.83 +0.6
2,482,517 - CCNA_02342 0.87 +1.2
2,482,628 - +0.6
2,482,634 + -1.2
2,482,659 + +1.2
2,482,665 - +1.0
2,482,667 - +1.3
2,482,724 + +0.2
2,482,724 + -0.4
2,482,724 + -1.6
2,482,724 + -0.7
2,482,732 - +0.9
2,482,732 - +0.2
2,482,732 - -1.5
2,482,732 - +2.0
2,482,732 - +1.0
2,482,732 - +1.5
2,482,732 - +0.9
2,482,749 + -0.6
2,482,757 - +2.6
2,482,767 - +0.2
2,482,795 + -0.2
2,482,795 + +0.1
2,482,803 - +0.0
2,482,834 + -1.0
2,482,837 - -0.9
2,482,837 - -0.4
2,482,857 + +0.0
2,482,923 + CCNA_02343 0.11 +1.7
2,482,939 + CCNA_02343 0.12 +0.3
2,482,949 + CCNA_02343 0.13 +0.3
2,482,992 + CCNA_02343 0.17 +0.3
2,482,992 + CCNA_02343 0.17 +0.5
2,482,994 + CCNA_02343 0.17 -0.1
2,483,000 - CCNA_02343 0.17 +1.4
2,483,014 + CCNA_02343 0.18 -1.4
2,483,014 + CCNA_02343 0.18 -0.7
2,483,022 - CCNA_02343 0.19 +0.4
2,483,022 - CCNA_02343 0.19 +1.0
2,483,037 + CCNA_02343 0.20 +0.1
2,483,037 + CCNA_02343 0.20 +1.4
2,483,039 + CCNA_02343 0.20 -0.8
2,483,039 + CCNA_02343 0.20 -0.1
2,483,045 - CCNA_02343 0.21 +1.6
2,483,045 - CCNA_02343 0.21 +1.3
2,483,045 - CCNA_02343 0.21 +1.3
2,483,045 - CCNA_02343 0.21 +0.8
2,483,060 - CCNA_02343 0.22 +0.6
2,483,064 + CCNA_02343 0.22 +0.0
2,483,074 + CCNA_02343 0.23 -0.6
2,483,105 - CCNA_02343 0.25 -1.1
2,483,107 - CCNA_02343 0.26 +1.1
2,483,142 + CCNA_02343 0.28 -0.3
2,483,144 + CCNA_02343 0.29 -3.3
2,483,150 - CCNA_02343 0.29 +1.4
2,483,152 - CCNA_02343 0.29 +0.8
2,483,186 + CCNA_02343 0.32 +0.6
2,483,186 + CCNA_02343 0.32 +0.3
2,483,229 + CCNA_02343 0.35 -0.7
2,483,230 - CCNA_02343 0.35 -0.3
2,483,236 - CCNA_02343 0.36 +0.9
2,483,242 - CCNA_02343 0.36 +1.7
2,483,263 - CCNA_02343 0.38 +0.2
2,483,288 - CCNA_02343 0.40 +0.1
2,483,310 - CCNA_02343 0.42 +0.4
2,483,321 - CCNA_02343 0.43 +1.5
2,483,367 + CCNA_02343 0.46 +0.1
2,483,367 + CCNA_02343 0.46 +1.8
2,483,372 + CCNA_02343 0.47 +0.0
2,483,372 + CCNA_02343 0.47 -1.3
2,483,375 - CCNA_02343 0.47 +0.9
2,483,379 + CCNA_02343 0.47 +2.9
2,483,385 + CCNA_02343 0.48 -0.1
2,483,385 + CCNA_02343 0.48 -0.6
2,483,387 - CCNA_02343 0.48 -0.6
2,483,393 - CCNA_02343 0.48 -1.5
2,483,393 - CCNA_02343 0.48 +0.3
2,483,400 + CCNA_02343 0.49 -2.0
2,483,403 - CCNA_02343 0.49 +0.0
2,483,405 + CCNA_02343 0.49 +0.0
2,483,408 - CCNA_02343 0.50 +0.7
2,483,410 + CCNA_02343 0.50 -2.1
2,483,410 + CCNA_02343 0.50 -0.4
2,483,413 - CCNA_02343 0.50 +1.8
2,483,413 - CCNA_02343 0.50 -0.3
2,483,413 - CCNA_02343 0.50 +1.5
2,483,418 - CCNA_02343 0.50 +0.2
2,483,418 - CCNA_02343 0.50 +2.0
2,483,418 - CCNA_02343 0.50 +0.0
2,483,420 + CCNA_02343 0.50 -2.0
2,483,440 + CCNA_02343 0.52 -0.1
2,483,479 + CCNA_02343 0.55 -2.5
2,483,479 + CCNA_02343 0.55 +0.4
2,483,479 + +0.0
2,483,487 - CCNA_02343 0.56 +1.0
2,483,487 - CCNA_02343 0.56 +0.8
2,483,487 - CCNA_02343 0.56 +0.0
2,483,487 - CCNA_02343 0.56 +0.9
2,483,498 - CCNA_02343 0.57 +1.5
2,483,510 + CCNA_02343 0.58 +0.1
2,483,510 + +0.0
2,483,510 + CCNA_02343 0.58 +3.2
2,483,518 - CCNA_02343 0.58 +0.2
2,483,518 - CCNA_02343 0.58 -0.8
2,483,531 - CCNA_02343 0.59 -0.7
2,483,577 - CCNA_02343 0.63 -0.1
2,483,590 + CCNA_02343 0.64 +0.4
2,483,598 - CCNA_02343 0.65 +1.5
2,483,609 + CCNA_02343 0.65 -0.4
2,483,617 - CCNA_02343 0.66 +1.5
2,483,698 + CCNA_02343 0.73 -0.1
2,483,708 + CCNA_02343 0.73 -0.7
2,483,713 + CCNA_02343 0.74 -1.4
2,483,721 - CCNA_02343 0.74 +1.6
2,483,721 - CCNA_02343 0.74 +0.6
2,483,728 + CCNA_02343 0.75 -1.8
2,483,736 - CCNA_02343 0.76 -0.0
2,483,736 - CCNA_02343 0.76 +0.6
2,483,738 + CCNA_02343 0.76 -0.4
2,483,751 - CCNA_02343 0.77 +0.8
2,483,751 - CCNA_02343 0.77 +0.3
2,483,773 + CCNA_02343 0.78 -1.9
2,483,783 + CCNA_02343 0.79 +0.2
2,483,796 + CCNA_02343 0.80 +0.2
2,483,796 + CCNA_02343 0.80 -1.0
2,483,804 - CCNA_02343 0.81 +0.6
2,483,833 + CCNA_02343 0.83 -2.0
2,483,843 + CCNA_02343 0.84 -3.0
2,483,866 - CCNA_02343 0.86 +1.3
2,483,902 - CCNA_02343 0.89 +1.0
2,483,907 - CCNA_02343 0.89 +0.9
2,483,937 + +0.0
2,483,945 - +0.0
2,483,961 + -3.0
2,483,963 + +0.4
2,483,963 + -1.2
2,483,971 - +1.2
2,483,988 + -2.9
2,483,996 - -0.5
2,484,082 - +0.8
2,484,141 - +0.7
2,484,153 - +0.8
2,484,179 - +0.9
2,484,894 - +1.2
2,484,894 - +2.0
2,484,894 - +1.2
2,484,900 - +0.6
2,484,922 - +0.4
2,484,963 - -0.4
2,484,967 - -1.7
2,484,967 - -1.1
2,484,968 - +0.0
2,484,977 + +1.6

Or see this region's nucleotide sequence