Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01854

Experiment: Cytidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01852 and CCNA_01853 are separated by 92 nucleotidesCCNA_01853 and CCNA_01854 are separated by 144 nucleotidesCCNA_01854 and CCNA_01855 are separated by 129 nucleotidesCCNA_01855 and CCNA_01856 overlap by 58 nucleotides CCNA_01852: CCNA_01852 - major facilitator superfamily transporter, at 1,983,992 to 1,985,332 _01852 CCNA_01853: CCNA_01853 - hypothetical protein, at 1,985,425 to 1,985,829 _01853 CCNA_01854: CCNA_01854 - GntR-family transcriptional regulator, at 1,985,974 to 1,986,639 _01854 CCNA_01855: CCNA_01855 - iron/manganese superoxide dismutase, at 1,986,769 to 1,987,485 _01855 CCNA_01856: CCNA_01856 - ferrichrome-iron receptor, at 1,987,428 to 1,989,626 _01856 Position (kb) 1985 1986 1987Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1984.999 kb on + strand, within CCNA_01852at 1985.004 kb on + strand, within CCNA_01852at 1985.007 kb on - strand, within CCNA_01852at 1985.042 kb on + strand, within CCNA_01852at 1985.113 kb on + strand, within CCNA_01852at 1985.113 kb on + strand, within CCNA_01852at 1985.123 kb on - strand, within CCNA_01852at 1985.131 kb on + strand, within CCNA_01852at 1985.132 kb on + strand, within CCNA_01852at 1985.137 kb on + strand, within CCNA_01852at 1985.142 kb on + strand, within CCNA_01852at 1985.146 kb on - strand, within CCNA_01852at 1985.153 kb on + strand, within CCNA_01852at 1985.161 kb on - strand, within CCNA_01852at 1985.197 kb on - strand, within CCNA_01852at 1985.198 kb on - strand, within CCNA_01852at 1985.211 kb on - strandat 1985.224 kb on + strandat 1985.227 kb on - strandat 1985.246 kb on + strandat 1985.326 kb on + strandat 1985.326 kb on + strandat 1985.334 kb on - strandat 1985.334 kb on - strandat 1985.338 kb on + strandat 1985.397 kb on + strandat 1985.419 kb on - strandat 1985.422 kb on + strandat 1985.430 kb on - strandat 1985.528 kb on + strand, within CCNA_01853at 1985.536 kb on - strand, within CCNA_01853at 1985.605 kb on - strand, within CCNA_01853at 1985.608 kb on + strand, within CCNA_01853at 1985.616 kb on - strand, within CCNA_01853at 1985.646 kb on + strand, within CCNA_01853at 1985.646 kb on + strand, within CCNA_01853at 1985.699 kb on + strand, within CCNA_01853at 1985.707 kb on - strand, within CCNA_01853at 1985.720 kb on + strand, within CCNA_01853at 1985.725 kb on + strand, within CCNA_01853at 1985.744 kb on + strandat 1985.766 kb on + strand, within CCNA_01853at 1985.766 kb on + strand, within CCNA_01853at 1985.768 kb on + strand, within CCNA_01853at 1985.870 kb on + strandat 1985.870 kb on + strandat 1985.884 kb on + strandat 1985.897 kb on - strandat 1985.922 kb on - strandat 1985.922 kb on - strandat 1985.922 kb on - strandat 1985.938 kb on + strandat 1985.946 kb on - strandat 1985.946 kb on - strandat 1985.976 kb on + strandat 1985.986 kb on + strandat 1985.994 kb on - strandat 1986.061 kb on + strandat 1986.061 kb on + strand, within CCNA_01854at 1986.083 kb on + strand, within CCNA_01854at 1986.146 kb on - strand, within CCNA_01854at 1986.206 kb on + strand, within CCNA_01854at 1986.223 kb on - strand, within CCNA_01854at 1986.265 kb on + strand, within CCNA_01854at 1986.273 kb on - strand, within CCNA_01854at 1986.277 kb on + strand, within CCNA_01854at 1986.284 kb on - strand, within CCNA_01854at 1986.285 kb on - strand, within CCNA_01854at 1986.363 kb on + strand, within CCNA_01854at 1986.391 kb on + strand, within CCNA_01854at 1986.392 kb on + strand, within CCNA_01854at 1986.415 kb on + strand, within CCNA_01854at 1986.415 kb on + strand, within CCNA_01854at 1986.500 kb on + strand, within CCNA_01854at 1986.518 kb on - strand, within CCNA_01854at 1986.520 kb on + strand, within CCNA_01854at 1986.542 kb on + strand, within CCNA_01854at 1986.567 kb on + strand, within CCNA_01854at 1986.646 kb on + strandat 1986.646 kb on + strandat 1986.646 kb on + strandat 1986.654 kb on - strandat 1986.654 kb on - strandat 1986.654 kb on - strandat 1986.656 kb on + strandat 1986.656 kb on + strandat 1986.656 kb on + strandat 1986.656 kb on + strandat 1986.656 kb on + strandat 1986.664 kb on - strandat 1986.664 kb on - strandat 1986.664 kb on - strandat 1986.717 kb on + strandat 1986.717 kb on + strandat 1986.751 kb on + strandat 1986.839 kb on + strandat 1986.857 kb on + strand, within CCNA_01855at 1986.894 kb on + strand, within CCNA_01855at 1986.897 kb on - strand, within CCNA_01855at 1986.924 kb on + strand, within CCNA_01855at 1986.964 kb on + strand, within CCNA_01855at 1986.972 kb on - strand, within CCNA_01855at 1986.972 kb on - strand, within CCNA_01855at 1986.974 kb on + strand, within CCNA_01855at 1986.982 kb on + strand, within CCNA_01855at 1987.028 kb on - strand, within CCNA_01855at 1987.107 kb on - strand, within CCNA_01855at 1987.108 kb on + strand, within CCNA_01855at 1987.108 kb on + strand, within CCNA_01855at 1987.118 kb on - strand, within CCNA_01855at 1987.130 kb on + strand, within CCNA_01855at 1987.182 kb on + strand, within CCNA_01855at 1987.201 kb on - strand, within CCNA_01855at 1987.243 kb on + strand, within CCNA_01855at 1987.243 kb on + strand, within CCNA_01855at 1987.282 kb on - strand, within CCNA_01855at 1987.335 kb on + strand, within CCNA_01855at 1987.335 kb on + strand, within CCNA_01855at 1987.335 kb on + strand, within CCNA_01855at 1987.335 kb on + strand, within CCNA_01855at 1987.343 kb on - strand, within CCNA_01855at 1987.356 kb on + strand, within CCNA_01855at 1987.393 kb on + strand, within CCNA_01855at 1987.393 kb on - strand, within CCNA_01855at 1987.396 kb on - strand, within CCNA_01855at 1987.441 kb on + strandat 1987.452 kb on + strandat 1987.464 kb on + strandat 1987.472 kb on - strandat 1987.472 kb on - strandat 1987.533 kb on + strandat 1987.533 kb on + strandat 1987.605 kb on - strandat 1987.613 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
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1,984,999 + CCNA_01852 0.75 -1.1
1,985,004 + CCNA_01852 0.75 +0.8
1,985,007 - CCNA_01852 0.76 +0.9
1,985,042 + CCNA_01852 0.78 -0.7
1,985,113 + CCNA_01852 0.84 +2.3
1,985,113 + CCNA_01852 0.84 -3.2
1,985,123 - CCNA_01852 0.84 +0.4
1,985,131 + CCNA_01852 0.85 +0.6
1,985,132 + CCNA_01852 0.85 +0.7
1,985,137 + CCNA_01852 0.85 -1.1
1,985,142 + CCNA_01852 0.86 +1.1
1,985,146 - CCNA_01852 0.86 -2.0
1,985,153 + CCNA_01852 0.87 -1.3
1,985,161 - CCNA_01852 0.87 -0.8
1,985,197 - CCNA_01852 0.90 +0.3
1,985,198 - CCNA_01852 0.90 -0.6
1,985,211 - +0.5
1,985,224 + -0.5
1,985,227 - -0.6
1,985,246 + -0.0
1,985,326 + -1.2
1,985,326 + +0.3
1,985,334 - -1.1
1,985,334 - -2.7
1,985,338 + -0.2
1,985,397 + -2.4
1,985,419 - +2.9
1,985,422 + -1.4
1,985,430 - +0.9
1,985,528 + CCNA_01853 0.25 +0.7
1,985,536 - CCNA_01853 0.27 -1.0
1,985,605 - CCNA_01853 0.44 +1.9
1,985,608 + CCNA_01853 0.45 -0.1
1,985,616 - CCNA_01853 0.47 -0.6
1,985,646 + CCNA_01853 0.55 +1.7
1,985,646 + CCNA_01853 0.55 +0.1
1,985,699 + CCNA_01853 0.68 +0.1
1,985,707 - CCNA_01853 0.70 -2.7
1,985,720 + CCNA_01853 0.73 +0.5
1,985,725 + CCNA_01853 0.74 -0.0
1,985,744 + +4.2
1,985,766 + CCNA_01853 0.84 +1.7
1,985,766 + CCNA_01853 0.84 +1.2
1,985,768 + CCNA_01853 0.85 +0.9
1,985,870 + +0.1
1,985,870 + +0.2
1,985,884 + +1.2
1,985,897 - -0.7
1,985,922 - +0.9
1,985,922 - -0.4
1,985,922 - +0.1
1,985,938 + -1.1
1,985,946 - +0.1
1,985,946 - -0.9
1,985,976 + -0.5
1,985,986 + +0.3
1,985,994 - +0.1
1,986,061 + +1.9
1,986,061 + CCNA_01854 0.13 +1.4
1,986,083 + CCNA_01854 0.16 +0.9
1,986,146 - CCNA_01854 0.26 -0.3
1,986,206 + CCNA_01854 0.35 +0.7
1,986,223 - CCNA_01854 0.37 -2.4
1,986,265 + CCNA_01854 0.44 -0.4
1,986,273 - CCNA_01854 0.45 -1.5
1,986,277 + CCNA_01854 0.45 +3.7
1,986,284 - CCNA_01854 0.47 -0.7
1,986,285 - CCNA_01854 0.47 -1.0
1,986,363 + CCNA_01854 0.58 +1.4
1,986,391 + CCNA_01854 0.63 -1.3
1,986,392 + CCNA_01854 0.63 -1.0
1,986,415 + CCNA_01854 0.66 +0.2
1,986,415 + CCNA_01854 0.66 -0.5
1,986,500 + CCNA_01854 0.79 -0.4
1,986,518 - CCNA_01854 0.82 -0.1
1,986,520 + CCNA_01854 0.82 +2.3
1,986,542 + CCNA_01854 0.85 -0.6
1,986,567 + CCNA_01854 0.89 -2.5
1,986,646 + +0.5
1,986,646 + -0.2
1,986,646 + +1.2
1,986,654 - +0.6
1,986,654 - -0.6
1,986,654 - -0.4
1,986,656 + -0.5
1,986,656 + -0.0
1,986,656 + +1.3
1,986,656 + +1.0
1,986,656 + -0.1
1,986,664 - -2.0
1,986,664 - -2.0
1,986,664 - -0.1
1,986,717 + -0.7
1,986,717 + -2.8
1,986,751 + -0.5
1,986,839 + +0.4
1,986,857 + CCNA_01855 0.12 -0.1
1,986,894 + CCNA_01855 0.17 +0.6
1,986,897 - CCNA_01855 0.18 +0.3
1,986,924 + CCNA_01855 0.22 +0.7
1,986,964 + CCNA_01855 0.27 +0.9
1,986,972 - CCNA_01855 0.28 -0.8
1,986,972 - CCNA_01855 0.28 -1.0
1,986,974 + CCNA_01855 0.29 +0.0
1,986,982 + CCNA_01855 0.30 -0.1
1,987,028 - CCNA_01855 0.36 -0.7
1,987,107 - CCNA_01855 0.47 +0.0
1,987,108 + CCNA_01855 0.47 -0.3
1,987,108 + CCNA_01855 0.47 +0.4
1,987,118 - CCNA_01855 0.49 +0.6
1,987,130 + CCNA_01855 0.50 -0.2
1,987,182 + CCNA_01855 0.58 -0.6
1,987,201 - CCNA_01855 0.60 -0.1
1,987,243 + CCNA_01855 0.66 -1.0
1,987,243 + CCNA_01855 0.66 -0.4
1,987,282 - CCNA_01855 0.72 -2.8
1,987,335 + CCNA_01855 0.79 +1.1
1,987,335 + CCNA_01855 0.79 -1.2
1,987,335 + CCNA_01855 0.79 -2.1
1,987,335 + CCNA_01855 0.79 -0.7
1,987,343 - CCNA_01855 0.80 -0.8
1,987,356 + CCNA_01855 0.82 -0.2
1,987,393 + CCNA_01855 0.87 -1.5
1,987,393 - CCNA_01855 0.87 +1.3
1,987,396 - CCNA_01855 0.87 +0.9
1,987,441 + -0.2
1,987,452 + +1.9
1,987,464 + -1.6
1,987,472 - -2.5
1,987,472 - -1.5
1,987,533 + +2.9
1,987,533 + +0.9
1,987,605 - -1.0
1,987,613 + -1.5

Or see this region's nucleotide sequence