Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00798

Experiment: Cytidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00796 and CCNA_03940 are separated by 109 nucleotidesCCNA_03940 and CCNA_00798 are separated by 8 nucleotidesCCNA_00798 and CCNA_00799 are separated by 172 nucleotides CCNA_00796: CCNA_00796 - oxygen sensory histidine kinase FixL, at 859,581 to 861,068 _00796 CCNA_03940: CCNA_03940 - hypothetical protein, at 861,178 to 861,285 _03940 CCNA_00798: CCNA_00798 - ABC transporter, ATP-binding protein cydC, at 861,294 to 862,892 _00798 CCNA_00799: CCNA_00799 - ABC transporter, ATP-binding protein cydD, at 863,065 to 864,705 _00799 Position (kb) 861 862 863Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 860.318 kb on - strand, within CCNA_00796at 860.359 kb on - strand, within CCNA_00796at 860.474 kb on - strand, within CCNA_00796at 860.490 kb on + strand, within CCNA_00796at 860.490 kb on + strand, within CCNA_00796at 860.629 kb on - strand, within CCNA_00796at 860.687 kb on - strand, within CCNA_00796at 860.708 kb on - strand, within CCNA_00796at 860.756 kb on - strand, within CCNA_00796at 860.759 kb on + strand, within CCNA_00796at 860.761 kb on - strand, within CCNA_00796at 860.797 kb on + strand, within CCNA_00796at 860.805 kb on - strand, within CCNA_00796at 860.805 kb on - strand, within CCNA_00796at 860.805 kb on - strand, within CCNA_00796at 860.836 kb on - strand, within CCNA_00796at 860.836 kb on - strand, within CCNA_00796at 860.841 kb on - strand, within CCNA_00796at 860.850 kb on + strand, within CCNA_00796at 860.858 kb on - strand, within CCNA_00796at 860.870 kb on + strand, within CCNA_00796at 860.870 kb on + strand, within CCNA_00796at 860.870 kb on + strand, within CCNA_00796at 860.876 kb on + strand, within CCNA_00796at 860.878 kb on - strand, within CCNA_00796at 860.878 kb on - strand, within CCNA_00796at 860.878 kb on - strand, within CCNA_00796at 860.894 kb on - strand, within CCNA_00796at 860.901 kb on + strand, within CCNA_00796at 860.901 kb on + strand, within CCNA_00796at 860.904 kb on - strand, within CCNA_00796at 860.909 kb on - strand, within CCNA_00796at 860.909 kb on - strand, within CCNA_00796at 860.932 kb on - strandat 860.967 kb on - strandat 861.028 kb on + strandat 861.028 kb on + strandat 861.042 kb on + strandat 861.121 kb on - strandat 861.121 kb on - strandat 861.124 kb on + strandat 861.124 kb on + strandat 861.131 kb on - strandat 861.132 kb on - strandat 861.132 kb on - strandat 861.132 kb on - strandat 861.132 kb on - strandat 861.132 kb on - strandat 861.137 kb on + strandat 861.137 kb on + strandat 861.147 kb on + strandat 861.153 kb on + strandat 861.153 kb on + strandat 861.250 kb on - strand, within CCNA_03940at 861.252 kb on + strand, within CCNA_03940at 861.260 kb on - strand, within CCNA_03940at 861.268 kb on - strand, within CCNA_03940at 861.309 kb on - strandat 861.315 kb on + strandat 861.361 kb on - strandat 861.405 kb on + strandat 861.474 kb on + strand, within CCNA_00798at 861.482 kb on - strand, within CCNA_00798at 861.482 kb on - strand, within CCNA_00798at 861.482 kb on - strand, within CCNA_00798at 861.505 kb on + strand, within CCNA_00798at 861.529 kb on + strand, within CCNA_00798at 861.534 kb on + strand, within CCNA_00798at 861.539 kb on + strand, within CCNA_00798at 861.540 kb on + strand, within CCNA_00798at 861.542 kb on - strand, within CCNA_00798at 861.602 kb on - strand, within CCNA_00798at 861.602 kb on - strand, within CCNA_00798at 861.602 kb on - strand, within CCNA_00798at 861.616 kb on + strand, within CCNA_00798at 861.655 kb on + strand, within CCNA_00798at 861.655 kb on + strand, within CCNA_00798at 861.655 kb on + strand, within CCNA_00798at 861.663 kb on - strand, within CCNA_00798at 861.764 kb on + strand, within CCNA_00798at 861.764 kb on + strand, within CCNA_00798at 861.788 kb on + strand, within CCNA_00798at 861.796 kb on - strand, within CCNA_00798at 861.796 kb on - strand, within CCNA_00798at 861.825 kb on + strand, within CCNA_00798at 861.840 kb on - strand, within CCNA_00798at 861.841 kb on - strand, within CCNA_00798at 861.866 kb on + strand, within CCNA_00798at 861.874 kb on - strand, within CCNA_00798at 861.874 kb on - strand, within CCNA_00798at 861.874 kb on - strand, within CCNA_00798at 861.889 kb on - strand, within CCNA_00798at 861.889 kb on - strand, within CCNA_00798at 861.889 kb on - strand, within CCNA_00798at 861.891 kb on - strand, within CCNA_00798at 861.891 kb on - strand, within CCNA_00798at 861.891 kb on - strand, within CCNA_00798at 861.919 kb on + strand, within CCNA_00798at 861.919 kb on + strand, within CCNA_00798at 861.919 kb on + strand, within CCNA_00798at 861.927 kb on - strand, within CCNA_00798at 861.941 kb on - strand, within CCNA_00798at 861.945 kb on + strand, within CCNA_00798at 861.945 kb on + strand, within CCNA_00798at 861.951 kb on - strand, within CCNA_00798at 861.953 kb on - strand, within CCNA_00798at 862.013 kb on + strand, within CCNA_00798at 862.013 kb on - strand, within CCNA_00798at 862.058 kb on - strand, within CCNA_00798at 862.130 kb on + strand, within CCNA_00798at 862.131 kb on + strand, within CCNA_00798at 862.133 kb on - strand, within CCNA_00798at 862.177 kb on - strand, within CCNA_00798at 862.214 kb on - strand, within CCNA_00798at 862.228 kb on - strand, within CCNA_00798at 862.277 kb on - strand, within CCNA_00798at 862.318 kb on + strand, within CCNA_00798at 862.326 kb on - strand, within CCNA_00798at 862.326 kb on - strand, within CCNA_00798at 862.368 kb on + strand, within CCNA_00798at 862.393 kb on + strand, within CCNA_00798at 862.425 kb on + strand, within CCNA_00798at 862.433 kb on - strand, within CCNA_00798at 862.443 kb on + strand, within CCNA_00798at 862.473 kb on + strand, within CCNA_00798at 862.481 kb on - strand, within CCNA_00798at 862.572 kb on - strand, within CCNA_00798at 862.604 kb on + strand, within CCNA_00798at 862.648 kb on + strand, within CCNA_00798at 862.691 kb on - strand, within CCNA_00798at 862.692 kb on - strand, within CCNA_00798at 862.743 kb on + strandat 862.743 kb on + strandat 862.751 kb on - strandat 862.816 kb on + strandat 862.824 kb on + strandat 862.903 kb on + strandat 862.903 kb on - strandat 862.920 kb on - strandat 862.968 kb on + strandat 862.979 kb on + strandat 863.000 kb on + strandat 863.030 kb on - strandat 863.057 kb on - strandat 863.058 kb on - strandat 863.086 kb on - strandat 863.111 kb on - strandat 863.129 kb on + strandat 863.129 kb on + strandat 863.137 kb on - strandat 863.137 kb on - strandat 863.137 kb on - strandat 863.142 kb on - strandat 863.161 kb on + strandat 863.228 kb on + strandat 863.236 kb on - strand, within CCNA_00799at 863.236 kb on - strand, within CCNA_00799at 863.236 kb on - strand, within CCNA_00799at 863.238 kb on + strand, within CCNA_00799at 863.253 kb on - strand, within CCNA_00799at 863.280 kb on + strand, within CCNA_00799at 863.280 kb on + strand, within CCNA_00799at 863.288 kb on - strand, within CCNA_00799at 863.316 kb on - strand, within CCNA_00799at 863.316 kb on - strand, within CCNA_00799at 863.334 kb on - strand, within CCNA_00799at 863.340 kb on + strand, within CCNA_00799at 863.390 kb on - strand, within CCNA_00799at 863.448 kb on + strand, within CCNA_00799at 863.448 kb on + strand, within CCNA_00799at 863.456 kb on - strand, within CCNA_00799at 863.497 kb on + strand, within CCNA_00799at 863.573 kb on + strand, within CCNA_00799at 863.583 kb on + strand, within CCNA_00799at 863.583 kb on + strand, within CCNA_00799at 863.586 kb on - strand, within CCNA_00799at 863.586 kb on - strand, within CCNA_00799at 863.621 kb on - strand, within CCNA_00799at 863.664 kb on - strand, within CCNA_00799at 863.675 kb on - strand, within CCNA_00799at 863.719 kb on - strand, within CCNA_00799at 863.719 kb on - strand, within CCNA_00799at 863.735 kb on + strand, within CCNA_00799at 863.751 kb on - strand, within CCNA_00799at 863.807 kb on + strand, within CCNA_00799at 863.812 kb on + strand, within CCNA_00799at 863.813 kb on + strand, within CCNA_00799at 863.843 kb on - strand, within CCNA_00799

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
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860,318 - CCNA_00796 0.50 -0.2
860,359 - CCNA_00796 0.52 -2.6
860,474 - CCNA_00796 0.60 -1.6
860,490 + CCNA_00796 0.61 -3.8
860,490 + CCNA_00796 0.61 -2.8
860,629 - CCNA_00796 0.70 -1.2
860,687 - CCNA_00796 0.74 -0.5
860,708 - CCNA_00796 0.76 -0.8
860,756 - CCNA_00796 0.79 -0.9
860,759 + CCNA_00796 0.79 -3.1
860,761 - CCNA_00796 0.79 -2.0
860,797 + CCNA_00796 0.82 -2.1
860,805 - CCNA_00796 0.82 -2.6
860,805 - CCNA_00796 0.82 -2.2
860,805 - CCNA_00796 0.82 -3.5
860,836 - CCNA_00796 0.84 +0.3
860,836 - CCNA_00796 0.84 +1.5
860,841 - CCNA_00796 0.85 -2.3
860,850 + CCNA_00796 0.85 -1.7
860,858 - CCNA_00796 0.86 -2.1
860,870 + CCNA_00796 0.87 +0.5
860,870 + CCNA_00796 0.87 -2.4
860,870 + CCNA_00796 0.87 -1.2
860,876 + CCNA_00796 0.87 +0.2
860,878 - CCNA_00796 0.87 -2.4
860,878 - CCNA_00796 0.87 -1.8
860,878 - CCNA_00796 0.87 -1.1
860,894 - CCNA_00796 0.88 -1.7
860,901 + CCNA_00796 0.89 -2.4
860,901 + CCNA_00796 0.89 -2.8
860,904 - CCNA_00796 0.89 -1.8
860,909 - CCNA_00796 0.89 -0.4
860,909 - CCNA_00796 0.89 -1.4
860,932 - -1.2
860,967 - -3.1
861,028 + -2.1
861,028 + -0.4
861,042 + -0.9
861,121 - +0.2
861,121 - +0.0
861,124 + +0.0
861,124 + -1.4
861,131 - -0.7
861,132 - +0.9
861,132 - +1.1
861,132 - +1.0
861,132 - +0.6
861,132 - -0.1
861,137 + -0.6
861,137 + -0.5
861,147 + -0.5
861,153 + -0.6
861,153 + +2.2
861,250 - CCNA_03940 0.67 -0.9
861,252 + CCNA_03940 0.69 +0.8
861,260 - CCNA_03940 0.76 -0.6
861,268 - CCNA_03940 0.83 +1.0
861,309 - -1.9
861,315 + -0.2
861,361 - -0.0
861,405 + -1.4
861,474 + CCNA_00798 0.11 -1.8
861,482 - CCNA_00798 0.12 -0.6
861,482 - CCNA_00798 0.12 -1.3
861,482 - CCNA_00798 0.12 -2.6
861,505 + CCNA_00798 0.13 -1.2
861,529 + CCNA_00798 0.15 -1.6
861,534 + CCNA_00798 0.15 +0.2
861,539 + CCNA_00798 0.15 -1.3
861,540 + CCNA_00798 0.15 -1.7
861,542 - CCNA_00798 0.16 -0.8
861,602 - CCNA_00798 0.19 -1.7
861,602 - CCNA_00798 0.19 -2.5
861,602 - CCNA_00798 0.19 -1.9
861,616 + CCNA_00798 0.20 -0.9
861,655 + CCNA_00798 0.23 -0.2
861,655 + CCNA_00798 0.23 -2.5
861,655 + CCNA_00798 0.23 -1.7
861,663 - CCNA_00798 0.23 -2.1
861,764 + CCNA_00798 0.29 -2.4
861,764 + CCNA_00798 0.29 -1.1
861,788 + CCNA_00798 0.31 -0.3
861,796 - CCNA_00798 0.31 -1.6
861,796 - CCNA_00798 0.31 -2.6
861,825 + CCNA_00798 0.33 -2.8
861,840 - CCNA_00798 0.34 -3.2
861,841 - CCNA_00798 0.34 -1.7
861,866 + CCNA_00798 0.36 -1.1
861,874 - CCNA_00798 0.36 -2.7
861,874 - CCNA_00798 0.36 -1.6
861,874 - CCNA_00798 0.36 -3.9
861,889 - CCNA_00798 0.37 +0.5
861,889 - CCNA_00798 0.37 -1.4
861,889 - CCNA_00798 0.37 -1.1
861,891 - CCNA_00798 0.37 -0.1
861,891 - CCNA_00798 0.37 -0.7
861,891 - CCNA_00798 0.37 -3.1
861,919 + CCNA_00798 0.39 -3.3
861,919 + CCNA_00798 0.39 +1.7
861,919 + CCNA_00798 0.39 -1.5
861,927 - CCNA_00798 0.40 +0.4
861,941 - CCNA_00798 0.40 -2.8
861,945 + CCNA_00798 0.41 -2.1
861,945 + CCNA_00798 0.41 -1.3
861,951 - CCNA_00798 0.41 -0.5
861,953 - CCNA_00798 0.41 -2.2
862,013 + CCNA_00798 0.45 -0.6
862,013 - CCNA_00798 0.45 -2.2
862,058 - CCNA_00798 0.48 -1.7
862,130 + CCNA_00798 0.52 -1.3
862,131 + CCNA_00798 0.52 -0.6
862,133 - CCNA_00798 0.52 -0.8
862,177 - CCNA_00798 0.55 +0.0
862,214 - CCNA_00798 0.58 -2.6
862,228 - CCNA_00798 0.58 -2.1
862,277 - CCNA_00798 0.61 -1.3
862,318 + CCNA_00798 0.64 -1.2
862,326 - CCNA_00798 0.65 +0.8
862,326 - CCNA_00798 0.65 +1.7
862,368 + CCNA_00798 0.67 -1.8
862,393 + CCNA_00798 0.69 -1.6
862,425 + CCNA_00798 0.71 -2.8
862,433 - CCNA_00798 0.71 -2.7
862,443 + CCNA_00798 0.72 -1.8
862,473 + CCNA_00798 0.74 -1.8
862,481 - CCNA_00798 0.74 -2.3
862,572 - CCNA_00798 0.80 -0.2
862,604 + CCNA_00798 0.82 -2.5
862,648 + CCNA_00798 0.85 -1.7
862,691 - CCNA_00798 0.87 -1.4
862,692 - CCNA_00798 0.87 -1.8
862,743 + -1.4
862,743 + +0.9
862,751 - -1.3
862,816 + -2.1
862,824 + -0.3
862,903 + +0.8
862,903 - +0.6
862,920 - +0.7
862,968 + +2.3
862,979 + -0.5
863,000 + -1.3
863,030 - -0.1
863,057 - +0.9
863,058 - +0.1
863,086 - -0.4
863,111 - -0.1
863,129 + -2.0
863,129 + -2.7
863,137 - -1.4
863,137 - -0.6
863,137 - -1.3
863,142 - -0.1
863,161 + -0.3
863,228 + -3.0
863,236 - CCNA_00799 0.10 -2.0
863,236 - CCNA_00799 0.10 -0.8
863,236 - CCNA_00799 0.10 -2.9
863,238 + CCNA_00799 0.11 -2.0
863,253 - CCNA_00799 0.11 +0.2
863,280 + CCNA_00799 0.13 -2.0
863,280 + CCNA_00799 0.13 -1.8
863,288 - CCNA_00799 0.14 -0.3
863,316 - CCNA_00799 0.15 -2.0
863,316 - CCNA_00799 0.15 -2.9
863,334 - CCNA_00799 0.16 -1.4
863,340 + CCNA_00799 0.17 -0.6
863,390 - CCNA_00799 0.20 -2.4
863,448 + CCNA_00799 0.23 -0.3
863,448 + CCNA_00799 0.23 -2.3
863,456 - CCNA_00799 0.24 -2.2
863,497 + CCNA_00799 0.26 -0.7
863,573 + CCNA_00799 0.31 -3.1
863,583 + CCNA_00799 0.32 -1.1
863,583 + CCNA_00799 0.32 -2.4
863,586 - CCNA_00799 0.32 -2.0
863,586 - CCNA_00799 0.32 -1.8
863,621 - CCNA_00799 0.34 -2.0
863,664 - CCNA_00799 0.37 -2.3
863,675 - CCNA_00799 0.37 -2.3
863,719 - CCNA_00799 0.40 +0.6
863,719 - CCNA_00799 0.40 +0.9
863,735 + CCNA_00799 0.41 -1.6
863,751 - CCNA_00799 0.42 -1.9
863,807 + CCNA_00799 0.45 -1.3
863,812 + CCNA_00799 0.46 -2.4
863,813 + CCNA_00799 0.46 -2.0
863,843 - CCNA_00799 0.47 -2.6

Or see this region's nucleotide sequence