Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00331

Experiment: Cytidine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00329 and CCNA_00330 are separated by 6 nucleotidesCCNA_00330 and CCNA_00331 are separated by 71 nucleotidesCCNA_00331 and CCNA_00332 are separated by 2 nucleotidesCCNA_00332 and CCNA_00333 are separated by 20 nucleotides CCNA_00329: CCNA_00329 - ribosomal-protein-alanine acetyltransferase, at 341,277 to 341,825 _00329 CCNA_00330: CCNA_00330 - molybdenum-pterin binding protein mopB, at 341,832 to 342,602 _00330 CCNA_00331: CCNA_00331 - molybdate-binding protein, at 342,674 to 343,432 _00331 CCNA_00332: CCNA_00332 - molybdenum transport system permease protein modB, at 343,435 to 344,109 _00332 CCNA_00333: CCNA_00333 - LytTr DNA-binding domain protein, at 344,130 to 344,957 _00333 Position (kb) 342 343 344Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 341.692 kb on - strand, within CCNA_00329at 341.699 kb on + strand, within CCNA_00329at 341.701 kb on - strand, within CCNA_00329at 341.777 kb on + strandat 341.780 kb on - strandat 341.780 kb on - strandat 341.791 kb on + strandat 341.791 kb on + strandat 341.828 kb on - strandat 341.830 kb on + strandat 341.830 kb on + strandat 341.838 kb on - strandat 341.838 kb on - strandat 341.838 kb on - strandat 341.865 kb on + strandat 341.898 kb on + strandat 341.905 kb on - strandat 341.971 kb on + strand, within CCNA_00330at 342.008 kb on + strand, within CCNA_00330at 342.008 kb on + strand, within CCNA_00330at 342.008 kb on + strand, within CCNA_00330at 342.008 kb on + strand, within CCNA_00330at 342.008 kb on + strand, within CCNA_00330at 342.021 kb on - strand, within CCNA_00330at 342.021 kb on - strand, within CCNA_00330at 342.026 kb on - strand, within CCNA_00330at 342.044 kb on - strand, within CCNA_00330at 342.049 kb on + strand, within CCNA_00330at 342.052 kb on - strand, within CCNA_00330at 342.093 kb on + strand, within CCNA_00330at 342.101 kb on + strand, within CCNA_00330at 342.101 kb on + strand, within CCNA_00330at 342.109 kb on - strand, within CCNA_00330at 342.109 kb on - strand, within CCNA_00330at 342.109 kb on - strand, within CCNA_00330at 342.143 kb on - strand, within CCNA_00330at 342.159 kb on + strand, within CCNA_00330at 342.182 kb on - strand, within CCNA_00330at 342.187 kb on - strand, within CCNA_00330at 342.203 kb on - strand, within CCNA_00330at 342.236 kb on + strand, within CCNA_00330at 342.236 kb on + strand, within CCNA_00330at 342.236 kb on + strand, within CCNA_00330at 342.236 kb on + strand, within CCNA_00330at 342.236 kb on + strand, within CCNA_00330at 342.236 kb on + strand, within CCNA_00330at 342.236 kb on + strand, within CCNA_00330at 342.236 kb on + strand, within CCNA_00330at 342.244 kb on + strand, within CCNA_00330at 342.244 kb on + strand, within CCNA_00330at 342.244 kb on + strand, within CCNA_00330at 342.244 kb on + strand, within CCNA_00330at 342.244 kb on - strand, within CCNA_00330at 342.244 kb on - strand, within CCNA_00330at 342.244 kb on - strand, within CCNA_00330at 342.244 kb on - strand, within CCNA_00330at 342.244 kb on - strand, within CCNA_00330at 342.252 kb on - strand, within CCNA_00330at 342.252 kb on - strand, within CCNA_00330at 342.252 kb on - strand, within CCNA_00330at 342.262 kb on - strand, within CCNA_00330at 342.277 kb on + strand, within CCNA_00330at 342.277 kb on + strand, within CCNA_00330at 342.277 kb on + strand, within CCNA_00330at 342.285 kb on - strand, within CCNA_00330at 342.306 kb on - strand, within CCNA_00330at 342.341 kb on - strand, within CCNA_00330at 342.394 kb on + strand, within CCNA_00330at 342.394 kb on + strand, within CCNA_00330at 342.394 kb on + strand, within CCNA_00330at 342.399 kb on + strand, within CCNA_00330at 342.407 kb on - strand, within CCNA_00330at 342.418 kb on + strand, within CCNA_00330at 342.423 kb on + strand, within CCNA_00330at 342.489 kb on + strand, within CCNA_00330at 342.489 kb on + strand, within CCNA_00330at 342.489 kb on + strand, within CCNA_00330at 342.497 kb on - strand, within CCNA_00330at 342.511 kb on + strand, within CCNA_00330at 342.511 kb on + strand, within CCNA_00330at 342.536 kb on + strandat 342.538 kb on - strandat 342.567 kb on + strandat 342.577 kb on - strandat 342.585 kb on - strandat 342.605 kb on - strandat 342.605 kb on - strandat 342.617 kb on - strandat 342.649 kb on - strandat 342.658 kb on + strandat 342.658 kb on + strandat 342.665 kb on + strandat 342.666 kb on - strandat 342.666 kb on - strandat 342.703 kb on + strandat 342.743 kb on + strandat 342.743 kb on + strandat 342.743 kb on + strandat 342.743 kb on + strandat 342.743 kb on + strandat 342.751 kb on - strand, within CCNA_00331at 342.756 kb on + strand, within CCNA_00331at 342.764 kb on - strand, within CCNA_00331at 342.770 kb on - strand, within CCNA_00331at 342.814 kb on + strand, within CCNA_00331at 342.814 kb on + strand, within CCNA_00331at 342.820 kb on + strand, within CCNA_00331at 342.820 kb on + strand, within CCNA_00331at 342.820 kb on + strand, within CCNA_00331at 342.828 kb on - strand, within CCNA_00331at 342.849 kb on + strand, within CCNA_00331at 342.868 kb on + strand, within CCNA_00331at 342.868 kb on + strand, within CCNA_00331at 342.876 kb on - strandat 342.876 kb on - strand, within CCNA_00331at 342.876 kb on - strand, within CCNA_00331at 342.876 kb on - strand, within CCNA_00331at 342.876 kb on - strand, within CCNA_00331at 342.876 kb on - strand, within CCNA_00331at 342.953 kb on + strand, within CCNA_00331at 342.987 kb on + strand, within CCNA_00331at 342.996 kb on + strand, within CCNA_00331at 343.004 kb on - strand, within CCNA_00331at 343.011 kb on + strand, within CCNA_00331at 343.046 kb on + strand, within CCNA_00331at 343.046 kb on + strand, within CCNA_00331at 343.046 kb on + strand, within CCNA_00331at 343.075 kb on + strand, within CCNA_00331at 343.087 kb on + strandat 343.087 kb on + strand, within CCNA_00331at 343.087 kb on + strand, within CCNA_00331at 343.087 kb on + strand, within CCNA_00331at 343.087 kb on + strand, within CCNA_00331at 343.087 kb on + strand, within CCNA_00331at 343.087 kb on + strand, within CCNA_00331at 343.095 kb on - strand, within CCNA_00331at 343.095 kb on - strand, within CCNA_00331at 343.095 kb on - strand, within CCNA_00331at 343.095 kb on - strand, within CCNA_00331at 343.095 kb on - strand, within CCNA_00331at 343.095 kb on - strand, within CCNA_00331at 343.095 kb on - strand, within CCNA_00331at 343.108 kb on - strand, within CCNA_00331at 343.186 kb on + strand, within CCNA_00331at 343.187 kb on + strand, within CCNA_00331at 343.205 kb on + strand, within CCNA_00331at 343.205 kb on + strand, within CCNA_00331at 343.213 kb on - strand, within CCNA_00331at 343.213 kb on - strand, within CCNA_00331at 343.218 kb on + strand, within CCNA_00331at 343.223 kb on + strand, within CCNA_00331at 343.231 kb on - strand, within CCNA_00331at 343.236 kb on - strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.243 kb on + strand, within CCNA_00331at 343.251 kb on - strand, within CCNA_00331at 343.251 kb on - strand, within CCNA_00331at 343.251 kb on - strand, within CCNA_00331at 343.251 kb on - strand, within CCNA_00331at 343.267 kb on - strand, within CCNA_00331at 343.286 kb on - strand, within CCNA_00331at 343.304 kb on - strand, within CCNA_00331at 343.317 kb on + strand, within CCNA_00331at 343.327 kb on + strand, within CCNA_00331at 343.327 kb on + strand, within CCNA_00331at 343.327 kb on + strand, within CCNA_00331at 343.335 kb on - strand, within CCNA_00331at 343.335 kb on - strand, within CCNA_00331at 343.335 kb on - strand, within CCNA_00331at 343.335 kb on - strand, within CCNA_00331at 343.364 kb on + strandat 343.364 kb on + strandat 343.372 kb on - strandat 343.431 kb on + strandat 343.434 kb on - strandat 343.439 kb on - strandat 343.444 kb on + strandat 343.486 kb on - strandat 343.502 kb on - strandat 343.507 kb on + strand, within CCNA_00332at 343.512 kb on + strand, within CCNA_00332at 343.512 kb on + strand, within CCNA_00332at 343.520 kb on - strand, within CCNA_00332at 343.548 kb on - strand, within CCNA_00332at 343.570 kb on + strand, within CCNA_00332at 343.589 kb on - strand, within CCNA_00332at 343.602 kb on + strand, within CCNA_00332at 343.610 kb on - strand, within CCNA_00332at 343.627 kb on + strand, within CCNA_00332at 343.627 kb on + strand, within CCNA_00332at 343.635 kb on - strandat 343.635 kb on - strand, within CCNA_00332at 343.635 kb on - strand, within CCNA_00332at 343.649 kb on - strand, within CCNA_00332at 343.675 kb on + strand, within CCNA_00332at 343.675 kb on + strand, within CCNA_00332at 343.689 kb on - strand, within CCNA_00332at 343.716 kb on + strand, within CCNA_00332at 343.724 kb on - strand, within CCNA_00332at 343.741 kb on - strand, within CCNA_00332at 343.762 kb on - strand, within CCNA_00332at 343.808 kb on - strand, within CCNA_00332at 343.832 kb on - strand, within CCNA_00332at 343.876 kb on + strand, within CCNA_00332at 343.887 kb on + strand, within CCNA_00332at 343.905 kb on + strand, within CCNA_00332at 343.934 kb on - strand, within CCNA_00332at 343.937 kb on + strand, within CCNA_00332at 343.949 kb on + strand, within CCNA_00332at 343.956 kb on + strand, within CCNA_00332at 343.956 kb on + strand, within CCNA_00332at 343.987 kb on + strand, within CCNA_00332at 343.998 kb on + strand, within CCNA_00332at 344.032 kb on + strand, within CCNA_00332at 344.034 kb on - strand, within CCNA_00332at 344.074 kb on - strandat 344.148 kb on + strandat 344.163 kb on - strandat 344.172 kb on + strandat 344.189 kb on - strandat 344.202 kb on - strandat 344.210 kb on - strandat 344.250 kb on + strand, within CCNA_00333at 344.260 kb on + strand, within CCNA_00333at 344.301 kb on - strandat 344.344 kb on - strand, within CCNA_00333at 344.361 kb on - strand, within CCNA_00333at 344.363 kb on - strand, within CCNA_00333at 344.366 kb on + strand, within CCNA_00333at 344.373 kb on + strand, within CCNA_00333at 344.374 kb on - strand, within CCNA_00333at 344.394 kb on + strand, within CCNA_00333

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytidine (N)
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341,692 - CCNA_00329 0.76 -0.0
341,699 + CCNA_00329 0.77 +0.3
341,701 - CCNA_00329 0.77 -1.6
341,777 + +0.8
341,780 - +1.7
341,780 - +0.3
341,791 + +0.6
341,791 + +0.0
341,828 - -0.8
341,830 + +0.1
341,830 + -1.7
341,838 - -0.2
341,838 - -0.3
341,838 - -0.3
341,865 + +0.4
341,898 + +3.1
341,905 - +0.1
341,971 + CCNA_00330 0.18 +0.7
342,008 + CCNA_00330 0.23 +1.0
342,008 + CCNA_00330 0.23 -0.6
342,008 + CCNA_00330 0.23 -2.2
342,008 + CCNA_00330 0.23 +0.1
342,008 + CCNA_00330 0.23 -1.3
342,021 - CCNA_00330 0.25 +0.1
342,021 - CCNA_00330 0.25 -1.2
342,026 - CCNA_00330 0.25 +0.3
342,044 - CCNA_00330 0.27 +1.1
342,049 + CCNA_00330 0.28 -0.6
342,052 - CCNA_00330 0.29 -0.2
342,093 + CCNA_00330 0.34 -2.5
342,101 + CCNA_00330 0.35 +0.2
342,101 + CCNA_00330 0.35 +0.9
342,109 - CCNA_00330 0.36 +0.7
342,109 - CCNA_00330 0.36 -0.2
342,109 - CCNA_00330 0.36 -0.4
342,143 - CCNA_00330 0.40 +0.9
342,159 + CCNA_00330 0.42 -0.2
342,182 - CCNA_00330 0.45 -1.1
342,187 - CCNA_00330 0.46 +0.2
342,203 - CCNA_00330 0.48 +0.9
342,236 + CCNA_00330 0.52 +0.3
342,236 + CCNA_00330 0.52 +0.1
342,236 + CCNA_00330 0.52 -1.1
342,236 + CCNA_00330 0.52 -1.0
342,236 + CCNA_00330 0.52 -1.9
342,236 + CCNA_00330 0.52 -0.3
342,236 + CCNA_00330 0.52 -0.3
342,236 + CCNA_00330 0.52 -1.1
342,244 + CCNA_00330 0.53 +1.7
342,244 + CCNA_00330 0.53 -1.7
342,244 + CCNA_00330 0.53 +0.7
342,244 + CCNA_00330 0.53 -1.1
342,244 - CCNA_00330 0.53 -1.3
342,244 - CCNA_00330 0.53 +0.4
342,244 - CCNA_00330 0.53 -2.4
342,244 - CCNA_00330 0.53 +0.9
342,244 - CCNA_00330 0.53 +0.5
342,252 - CCNA_00330 0.54 -1.8
342,252 - CCNA_00330 0.54 +0.9
342,252 - CCNA_00330 0.54 -0.3
342,262 - CCNA_00330 0.56 -2.6
342,277 + CCNA_00330 0.58 -0.3
342,277 + CCNA_00330 0.58 -0.6
342,277 + CCNA_00330 0.58 -1.0
342,285 - CCNA_00330 0.59 +0.6
342,306 - CCNA_00330 0.61 -2.1
342,341 - CCNA_00330 0.66 +0.1
342,394 + CCNA_00330 0.73 +0.6
342,394 + CCNA_00330 0.73 +0.3
342,394 + CCNA_00330 0.73 -0.7
342,399 + CCNA_00330 0.74 -1.1
342,407 - CCNA_00330 0.75 +1.0
342,418 + CCNA_00330 0.76 +2.3
342,423 + CCNA_00330 0.77 -1.5
342,489 + CCNA_00330 0.85 -0.2
342,489 + CCNA_00330 0.85 +0.6
342,489 + CCNA_00330 0.85 -0.6
342,497 - CCNA_00330 0.86 -0.7
342,511 + CCNA_00330 0.88 -0.3
342,511 + CCNA_00330 0.88 -1.4
342,536 + -0.7
342,538 - +0.7
342,567 + -3.2
342,577 - -2.1
342,585 - -2.1
342,605 - +3.3
342,605 - +0.3
342,617 - -0.6
342,649 - -0.5
342,658 + -2.5
342,658 + -1.1
342,665 + +1.0
342,666 - -1.0
342,666 - +0.5
342,703 + +0.3
342,743 + +1.0
342,743 + +0.9
342,743 + +1.8
342,743 + +1.1
342,743 + +0.9
342,751 - CCNA_00331 0.10 -1.7
342,756 + CCNA_00331 0.11 +2.0
342,764 - CCNA_00331 0.12 -1.1
342,770 - CCNA_00331 0.13 -0.1
342,814 + CCNA_00331 0.18 +2.1
342,814 + CCNA_00331 0.18 +0.2
342,820 + CCNA_00331 0.19 +1.6
342,820 + CCNA_00331 0.19 +2.1
342,820 + CCNA_00331 0.19 +1.7
342,828 - CCNA_00331 0.20 -0.2
342,849 + CCNA_00331 0.23 +3.0
342,868 + CCNA_00331 0.26 +1.5
342,868 + CCNA_00331 0.26 +1.7
342,876 - +1.7
342,876 - CCNA_00331 0.27 +2.4
342,876 - CCNA_00331 0.27 -0.6
342,876 - CCNA_00331 0.27 +1.5
342,876 - CCNA_00331 0.27 -0.7
342,876 - CCNA_00331 0.27 +1.0
342,953 + CCNA_00331 0.37 +0.9
342,987 + CCNA_00331 0.41 +3.1
342,996 + CCNA_00331 0.42 +1.8
343,004 - CCNA_00331 0.43 +1.1
343,011 + CCNA_00331 0.44 +2.4
343,046 + CCNA_00331 0.49 +0.9
343,046 + CCNA_00331 0.49 +1.9
343,046 + CCNA_00331 0.49 +2.1
343,075 + CCNA_00331 0.53 +1.5
343,087 + +1.7
343,087 + CCNA_00331 0.54 +0.9
343,087 + CCNA_00331 0.54 +1.4
343,087 + CCNA_00331 0.54 +1.1
343,087 + CCNA_00331 0.54 +1.3
343,087 + CCNA_00331 0.54 +1.5
343,087 + CCNA_00331 0.54 +1.1
343,095 - CCNA_00331 0.55 +2.1
343,095 - CCNA_00331 0.55 +0.1
343,095 - CCNA_00331 0.55 -0.6
343,095 - CCNA_00331 0.55 +0.5
343,095 - CCNA_00331 0.55 +0.7
343,095 - CCNA_00331 0.55 +0.3
343,095 - CCNA_00331 0.55 +0.1
343,108 - CCNA_00331 0.57 +1.3
343,186 + CCNA_00331 0.67 +1.6
343,187 + CCNA_00331 0.68 +1.6
343,205 + CCNA_00331 0.70 +1.2
343,205 + CCNA_00331 0.70 -1.7
343,213 - CCNA_00331 0.71 +0.1
343,213 - CCNA_00331 0.71 -2.1
343,218 + CCNA_00331 0.72 +1.0
343,223 + CCNA_00331 0.72 +1.4
343,231 - CCNA_00331 0.73 +0.4
343,236 - CCNA_00331 0.74 +2.1
343,243 + CCNA_00331 0.75 +1.5
343,243 + CCNA_00331 0.75 +1.4
343,243 + CCNA_00331 0.75 -1.0
343,243 + CCNA_00331 0.75 +0.9
343,243 + CCNA_00331 0.75 +1.7
343,243 + CCNA_00331 0.75 +1.4
343,243 + CCNA_00331 0.75 +1.7
343,243 + CCNA_00331 0.75 +2.2
343,243 + CCNA_00331 0.75 +1.5
343,243 + CCNA_00331 0.75 +1.5
343,243 + CCNA_00331 0.75 +1.6
343,243 + CCNA_00331 0.75 +1.5
343,243 + CCNA_00331 0.75 +1.5
343,243 + CCNA_00331 0.75 +2.3
343,243 + CCNA_00331 0.75 +1.6
343,251 - CCNA_00331 0.76 -1.0
343,251 - CCNA_00331 0.76 -1.2
343,251 - CCNA_00331 0.76 +0.4
343,251 - CCNA_00331 0.76 -2.0
343,267 - CCNA_00331 0.78 -0.8
343,286 - CCNA_00331 0.81 -1.8
343,304 - CCNA_00331 0.83 -1.3
343,317 + CCNA_00331 0.85 +1.7
343,327 + CCNA_00331 0.86 +2.1
343,327 + CCNA_00331 0.86 +1.8
343,327 + CCNA_00331 0.86 +2.0
343,335 - CCNA_00331 0.87 -0.2
343,335 - CCNA_00331 0.87 +0.4
343,335 - CCNA_00331 0.87 +2.2
343,335 - CCNA_00331 0.87 -1.1
343,364 + -0.8
343,364 + +1.7
343,372 - +0.2
343,431 + +0.4
343,434 - -0.3
343,439 - -3.2
343,444 + +1.3
343,486 - -2.6
343,502 - -0.3
343,507 + CCNA_00332 0.11 +2.7
343,512 + CCNA_00332 0.11 +0.8
343,512 + CCNA_00332 0.11 +2.1
343,520 - CCNA_00332 0.13 +1.1
343,548 - CCNA_00332 0.17 -0.7
343,570 + CCNA_00332 0.20 +1.3
343,589 - CCNA_00332 0.23 -0.5
343,602 + CCNA_00332 0.25 +0.8
343,610 - CCNA_00332 0.26 -1.9
343,627 + CCNA_00332 0.28 +0.0
343,627 + CCNA_00332 0.28 +1.2
343,635 - +0.1
343,635 - CCNA_00332 0.30 +1.0
343,635 - CCNA_00332 0.30 +0.1
343,649 - CCNA_00332 0.32 -1.0
343,675 + CCNA_00332 0.36 +1.5
343,675 + CCNA_00332 0.36 +0.8
343,689 - CCNA_00332 0.38 +1.9
343,716 + CCNA_00332 0.42 +0.4
343,724 - CCNA_00332 0.43 -0.0
343,741 - CCNA_00332 0.45 +2.1
343,762 - CCNA_00332 0.48 -1.3
343,808 - CCNA_00332 0.55 +0.5
343,832 - CCNA_00332 0.59 +1.7
343,876 + CCNA_00332 0.65 +2.1
343,887 + CCNA_00332 0.67 -0.1
343,905 + CCNA_00332 0.70 +0.3
343,934 - CCNA_00332 0.74 +1.8
343,937 + CCNA_00332 0.74 +0.7
343,949 + CCNA_00332 0.76 +3.7
343,956 + CCNA_00332 0.77 +1.6
343,956 + CCNA_00332 0.77 +1.5
343,987 + CCNA_00332 0.82 +2.7
343,998 + CCNA_00332 0.83 +1.6
344,032 + CCNA_00332 0.88 +2.6
344,034 - CCNA_00332 0.89 -0.5
344,074 - -0.3
344,148 + +0.1
344,163 - -1.8
344,172 + +0.4
344,189 - -0.6
344,202 - +0.3
344,210 - +1.4
344,250 + CCNA_00333 0.14 +1.8
344,260 + CCNA_00333 0.16 -0.7
344,301 - +3.2
344,344 - CCNA_00333 0.26 +1.0
344,361 - CCNA_00333 0.28 +0.3
344,363 - CCNA_00333 0.28 +0.3
344,366 + CCNA_00333 0.29 -0.7
344,373 + CCNA_00333 0.29 +1.2
344,374 - CCNA_00333 0.29 -0.6
344,394 + CCNA_00333 0.32 -1.3

Or see this region's nucleotide sequence