Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS17555

Experiment: R2A with Chloramphenicol 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS17550 and CA265_RS17555 are separated by 156 nucleotidesCA265_RS17555 and CA265_RS17560 are separated by 3 nucleotidesCA265_RS17560 and CA265_RS17565 overlap by 29 nucleotidesCA265_RS17565 and CA265_RS17570 overlap by 29 nucleotides CA265_RS17550: CA265_RS17550 - hypothetical protein, at 4,375,074 to 4,376,102 _RS17550 CA265_RS17555: CA265_RS17555 - hypothetical protein, at 4,376,259 to 4,377,167 _RS17555 CA265_RS17560: CA265_RS17560 - peptidylprolyl isomerase, at 4,377,171 to 4,377,656 _RS17560 CA265_RS17565: CA265_RS17565 - hypothetical protein, at 4,377,628 to 4,377,822 _RS17565 CA265_RS17570: CA265_RS17570 - peptidylprolyl isomerase, at 4,377,794 to 4,378,240 _RS17570 Position (kb) 4376 4377 4378Strain fitness (log2 ratio) -2 -1 0 1 2at 4375.268 kb on + strand, within CA265_RS17550at 4375.274 kb on + strand, within CA265_RS17550at 4375.274 kb on + strand, within CA265_RS17550at 4375.338 kb on + strand, within CA265_RS17550at 4375.371 kb on + strand, within CA265_RS17550at 4375.372 kb on - strand, within CA265_RS17550at 4375.431 kb on + strand, within CA265_RS17550at 4375.472 kb on - strand, within CA265_RS17550at 4375.500 kb on - strand, within CA265_RS17550at 4375.551 kb on - strand, within CA265_RS17550at 4375.574 kb on + strand, within CA265_RS17550at 4375.589 kb on + strand, within CA265_RS17550at 4375.735 kb on + strand, within CA265_RS17550at 4375.737 kb on + strand, within CA265_RS17550at 4375.738 kb on - strand, within CA265_RS17550at 4375.757 kb on + strand, within CA265_RS17550at 4375.765 kb on - strand, within CA265_RS17550at 4375.782 kb on - strand, within CA265_RS17550at 4375.826 kb on - strand, within CA265_RS17550at 4375.856 kb on + strand, within CA265_RS17550at 4375.856 kb on + strand, within CA265_RS17550at 4375.959 kb on + strand, within CA265_RS17550at 4375.964 kb on - strand, within CA265_RS17550at 4375.977 kb on + strand, within CA265_RS17550at 4376.058 kb on + strandat 4376.062 kb on - strandat 4376.062 kb on - strandat 4376.074 kb on - strandat 4376.107 kb on + strandat 4376.110 kb on - strandat 4376.299 kb on - strandat 4376.357 kb on + strand, within CA265_RS17555at 4376.412 kb on + strand, within CA265_RS17555at 4376.415 kb on + strand, within CA265_RS17555at 4376.491 kb on + strand, within CA265_RS17555at 4376.492 kb on - strand, within CA265_RS17555at 4376.496 kb on - strand, within CA265_RS17555at 4376.496 kb on - strand, within CA265_RS17555at 4376.499 kb on + strand, within CA265_RS17555at 4376.557 kb on + strand, within CA265_RS17555at 4376.557 kb on + strand, within CA265_RS17555at 4376.635 kb on - strand, within CA265_RS17555at 4376.729 kb on - strand, within CA265_RS17555at 4376.753 kb on + strand, within CA265_RS17555at 4376.787 kb on + strand, within CA265_RS17555at 4376.804 kb on - strand, within CA265_RS17555at 4376.844 kb on + strand, within CA265_RS17555at 4376.844 kb on + strand, within CA265_RS17555at 4376.857 kb on + strand, within CA265_RS17555at 4376.857 kb on + strand, within CA265_RS17555at 4376.893 kb on + strand, within CA265_RS17555at 4376.912 kb on + strand, within CA265_RS17555at 4376.924 kb on + strand, within CA265_RS17555at 4376.933 kb on - strand, within CA265_RS17555at 4376.937 kb on + strand, within CA265_RS17555at 4376.938 kb on - strand, within CA265_RS17555at 4376.964 kb on - strand, within CA265_RS17555at 4376.972 kb on + strand, within CA265_RS17555at 4376.993 kb on - strand, within CA265_RS17555at 4377.047 kb on + strand, within CA265_RS17555at 4377.047 kb on + strand, within CA265_RS17555at 4377.047 kb on + strand, within CA265_RS17555at 4377.047 kb on + strand, within CA265_RS17555at 4377.048 kb on - strand, within CA265_RS17555at 4377.048 kb on - strand, within CA265_RS17555at 4377.050 kb on - strand, within CA265_RS17555at 4377.073 kb on - strand, within CA265_RS17555at 4377.120 kb on - strandat 4377.147 kb on - strandat 4377.170 kb on - strandat 4377.177 kb on + strandat 4377.178 kb on - strandat 4377.185 kb on + strandat 4377.250 kb on + strand, within CA265_RS17560at 4377.251 kb on - strand, within CA265_RS17560at 4377.259 kb on + strand, within CA265_RS17560at 4377.259 kb on + strand, within CA265_RS17560at 4377.259 kb on + strand, within CA265_RS17560at 4377.260 kb on - strand, within CA265_RS17560at 4377.260 kb on - strand, within CA265_RS17560at 4377.260 kb on - strand, within CA265_RS17560at 4377.268 kb on - strand, within CA265_RS17560at 4377.268 kb on - strand, within CA265_RS17560at 4377.269 kb on + strand, within CA265_RS17560at 4377.270 kb on - strand, within CA265_RS17560at 4377.324 kb on + strand, within CA265_RS17560at 4377.325 kb on - strand, within CA265_RS17560at 4377.342 kb on + strand, within CA265_RS17560at 4377.398 kb on + strand, within CA265_RS17560at 4377.437 kb on - strand, within CA265_RS17560at 4377.439 kb on - strand, within CA265_RS17560at 4377.439 kb on - strand, within CA265_RS17560at 4377.441 kb on + strand, within CA265_RS17560at 4377.465 kb on + strand, within CA265_RS17560at 4377.477 kb on + strand, within CA265_RS17560at 4377.478 kb on - strand, within CA265_RS17560at 4377.480 kb on - strand, within CA265_RS17560at 4377.509 kb on + strand, within CA265_RS17560at 4377.510 kb on - strand, within CA265_RS17560at 4377.532 kb on - strand, within CA265_RS17560at 4377.563 kb on + strand, within CA265_RS17560at 4377.635 kb on + strandat 4377.636 kb on - strandat 4377.703 kb on + strand, within CA265_RS17565at 4377.709 kb on - strand, within CA265_RS17565at 4377.726 kb on + strand, within CA265_RS17565at 4377.782 kb on + strand, within CA265_RS17565at 4377.783 kb on - strand, within CA265_RS17565at 4377.790 kb on - strand, within CA265_RS17565at 4377.790 kb on - strand, within CA265_RS17565at 4377.795 kb on + strandat 4377.796 kb on - strandat 4377.796 kb on - strandat 4377.796 kb on - strandat 4377.893 kb on + strand, within CA265_RS17570at 4377.899 kb on + strand, within CA265_RS17570at 4377.900 kb on - strand, within CA265_RS17570at 4377.948 kb on - strand, within CA265_RS17570at 4378.026 kb on + strand, within CA265_RS17570at 4378.060 kb on + strand, within CA265_RS17570at 4378.096 kb on - strand, within CA265_RS17570at 4378.096 kb on - strand, within CA265_RS17570

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Chloramphenicol 0.001 mg/ml
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4,375,268 + CA265_RS17550 0.19 +0.5
4,375,274 + CA265_RS17550 0.19 -0.3
4,375,274 + CA265_RS17550 0.19 -0.7
4,375,338 + CA265_RS17550 0.26 -0.6
4,375,371 + CA265_RS17550 0.29 +0.5
4,375,372 - CA265_RS17550 0.29 +1.5
4,375,431 + CA265_RS17550 0.35 -0.5
4,375,472 - CA265_RS17550 0.39 -0.6
4,375,500 - CA265_RS17550 0.41 -1.3
4,375,551 - CA265_RS17550 0.46 +0.8
4,375,574 + CA265_RS17550 0.49 +0.3
4,375,589 + CA265_RS17550 0.50 -0.6
4,375,735 + CA265_RS17550 0.64 -2.1
4,375,737 + CA265_RS17550 0.64 +0.6
4,375,738 - CA265_RS17550 0.65 -0.0
4,375,757 + CA265_RS17550 0.66 +1.0
4,375,765 - CA265_RS17550 0.67 +0.2
4,375,782 - CA265_RS17550 0.69 -0.1
4,375,826 - CA265_RS17550 0.73 -0.2
4,375,856 + CA265_RS17550 0.76 -0.4
4,375,856 + CA265_RS17550 0.76 +0.2
4,375,959 + CA265_RS17550 0.86 +0.0
4,375,964 - CA265_RS17550 0.86 -0.2
4,375,977 + CA265_RS17550 0.88 +1.2
4,376,058 + -1.0
4,376,062 - +1.0
4,376,062 - +1.3
4,376,074 - +0.2
4,376,107 + +0.2
4,376,110 - -0.8
4,376,299 - -0.7
4,376,357 + CA265_RS17555 0.11 +1.2
4,376,412 + CA265_RS17555 0.17 +0.7
4,376,415 + CA265_RS17555 0.17 +0.5
4,376,491 + CA265_RS17555 0.26 +2.2
4,376,492 - CA265_RS17555 0.26 +1.3
4,376,496 - CA265_RS17555 0.26 -0.6
4,376,496 - CA265_RS17555 0.26 +0.6
4,376,499 + CA265_RS17555 0.26 +0.1
4,376,557 + CA265_RS17555 0.33 -0.2
4,376,557 + CA265_RS17555 0.33 -0.1
4,376,635 - CA265_RS17555 0.41 -0.2
4,376,729 - CA265_RS17555 0.52 +0.2
4,376,753 + CA265_RS17555 0.54 -0.5
4,376,787 + CA265_RS17555 0.58 +1.4
4,376,804 - CA265_RS17555 0.60 +0.5
4,376,844 + CA265_RS17555 0.64 +0.2
4,376,844 + CA265_RS17555 0.64 +1.2
4,376,857 + CA265_RS17555 0.66 +1.9
4,376,857 + CA265_RS17555 0.66 -2.0
4,376,893 + CA265_RS17555 0.70 -0.9
4,376,912 + CA265_RS17555 0.72 +0.0
4,376,924 + CA265_RS17555 0.73 +0.3
4,376,933 - CA265_RS17555 0.74 -0.1
4,376,937 + CA265_RS17555 0.75 +0.9
4,376,938 - CA265_RS17555 0.75 +0.3
4,376,964 - CA265_RS17555 0.78 -0.5
4,376,972 + CA265_RS17555 0.78 -0.4
4,376,993 - CA265_RS17555 0.81 -0.0
4,377,047 + CA265_RS17555 0.87 +0.9
4,377,047 + CA265_RS17555 0.87 -0.0
4,377,047 + CA265_RS17555 0.87 +0.8
4,377,047 + CA265_RS17555 0.87 -0.2
4,377,048 - CA265_RS17555 0.87 -0.1
4,377,048 - CA265_RS17555 0.87 +0.6
4,377,050 - CA265_RS17555 0.87 +1.2
4,377,073 - CA265_RS17555 0.90 -0.5
4,377,120 - +1.4
4,377,147 - +0.2
4,377,170 - +0.5
4,377,177 + +0.8
4,377,178 - -0.0
4,377,185 + +0.2
4,377,250 + CA265_RS17560 0.16 +0.7
4,377,251 - CA265_RS17560 0.16 +0.2
4,377,259 + CA265_RS17560 0.18 +0.7
4,377,259 + CA265_RS17560 0.18 +0.8
4,377,259 + CA265_RS17560 0.18 -1.2
4,377,260 - CA265_RS17560 0.18 +0.5
4,377,260 - CA265_RS17560 0.18 -0.6
4,377,260 - CA265_RS17560 0.18 +0.5
4,377,268 - CA265_RS17560 0.20 +0.6
4,377,268 - CA265_RS17560 0.20 -1.6
4,377,269 + CA265_RS17560 0.20 +0.6
4,377,270 - CA265_RS17560 0.20 +0.1
4,377,324 + CA265_RS17560 0.31 +0.4
4,377,325 - CA265_RS17560 0.32 +0.5
4,377,342 + CA265_RS17560 0.35 -0.4
4,377,398 + CA265_RS17560 0.47 -0.2
4,377,437 - CA265_RS17560 0.55 -1.6
4,377,439 - CA265_RS17560 0.55 +1.6
4,377,439 - CA265_RS17560 0.55 +0.5
4,377,441 + CA265_RS17560 0.56 -0.3
4,377,465 + CA265_RS17560 0.60 +2.5
4,377,477 + CA265_RS17560 0.63 +0.8
4,377,478 - CA265_RS17560 0.63 -0.2
4,377,480 - CA265_RS17560 0.64 -0.6
4,377,509 + CA265_RS17560 0.70 +0.8
4,377,510 - CA265_RS17560 0.70 +0.3
4,377,532 - CA265_RS17560 0.74 +0.6
4,377,563 + CA265_RS17560 0.81 -0.1
4,377,635 + +0.3
4,377,636 - -0.0
4,377,703 + CA265_RS17565 0.38 -0.1
4,377,709 - CA265_RS17565 0.42 +0.0
4,377,726 + CA265_RS17565 0.50 -0.8
4,377,782 + CA265_RS17565 0.79 +0.5
4,377,783 - CA265_RS17565 0.79 +0.1
4,377,790 - CA265_RS17565 0.83 +0.4
4,377,790 - CA265_RS17565 0.83 +0.4
4,377,795 + -0.8
4,377,796 - -0.4
4,377,796 - +0.0
4,377,796 - +0.4
4,377,893 + CA265_RS17570 0.22 +0.2
4,377,899 + CA265_RS17570 0.23 +0.7
4,377,900 - CA265_RS17570 0.24 +0.9
4,377,948 - CA265_RS17570 0.34 +0.1
4,378,026 + CA265_RS17570 0.52 -0.2
4,378,060 + CA265_RS17570 0.60 -0.5
4,378,096 - CA265_RS17570 0.68 -0.5
4,378,096 - CA265_RS17570 0.68 +1.2

Or see this region's nucleotide sequence