Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04905

Experiment: R2A with Chloramphenicol 0.001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Chloramphenicol 0.001 mg/ml
1,167,347	-		CA265_RS04900	0.25	-0.9
1,167,415	+		CA265_RS04900	0.30	+0.3
1,167,652	+		CA265_RS04900	0.49	-1.1
1,167,652	+		CA265_RS04900	0.49	-1.0
1,167,652	+		CA265_RS04900	0.49	-0.8
1,167,653	-		CA265_RS04900	0.49	-0.1
1,167,653	-		CA265_RS04900	0.49	-0.9
1,167,653	-		CA265_RS04900	0.49	-0.0
1,167,661	-		CA265_RS04900	0.50	+0.5
1,167,769	+		CA265_RS04900	0.58	-0.4
1,167,769	+		CA265_RS04900	0.58	-0.1
1,167,769	+		CA265_RS04900	0.58	-1.2
1,167,769	+		CA265_RS04900	0.58	-0.5
1,167,770	-		CA265_RS04900	0.58	-2.8
1,168,061	+		CA265_RS04900	0.81	-0.5
1,168,083	+		CA265_RS04900	0.83	-0.8
1,168,084	-		CA265_RS04900	0.83	+0.2
1,168,163	-		CA265_RS04900	0.89	-0.7
1,168,206	+				-2.2
1,168,207	-				-0.1
1,168,207	-				+0.4
1,168,295	+				+0.2
1,168,361	+				+0.3
1,168,362	-				+0.8
1,168,362	-				+0.0
1,168,392	+				+0.4
1,168,482	-		CA265_RS04905	0.16	+0.8
1,168,492	-		CA265_RS04905	0.17	-1.5
1,168,624	+		CA265_RS04905	0.30	+0.0
1,168,689	+		CA265_RS04905	0.36	-0.4
1,168,901	-		CA265_RS04905	0.56	+0.5
1,168,916	+		CA265_RS04905	0.57	-1.3
1,168,917	-		CA265_RS04905	0.57	+0.4
1,169,012	+		CA265_RS04905	0.66	+0.5
1,169,013	-		CA265_RS04905	0.66	-0.2
1,169,016	-		CA265_RS04905	0.66	+0.2
1,169,190	+				+1.5
1,169,190	+		CA265_RS04905	0.83	-0.3
1,169,191	-		CA265_RS04905	0.83	-1.0
1,169,260	+		CA265_RS04905	0.89	-0.6
1,169,283	+				-0.3
1,169,284	-				+0.6
1,169,339	-				+0.3
1,169,440	+				+0.7
1,169,441	-				-0.1
1,169,512	+				-1.1
1,169,535	+				+0.5
1,169,535	+				-0.9
1,169,694	-		CA265_RS04910	0.18	-0.7
1,169,701	+		CA265_RS04910	0.18	-0.2
1,169,702	-		CA265_RS04910	0.18	+0.8
1,169,801	-		CA265_RS04910	0.24	-0.3
1,169,830	-		CA265_RS04910	0.26	+0.1
1,169,858	+		CA265_RS04910	0.27	-1.7
1,169,871	-		CA265_RS04910	0.28	+1.3
1,170,061	+		CA265_RS04910	0.39	-1.1
1,170,062	-		CA265_RS04910	0.39	-0.9
1,170,064	+		CA265_RS04910	0.39	-0.4
1,170,111	+		CA265_RS04910	0.42	+0.0
1,170,112	-		CA265_RS04910	0.42	+1.0
1,170,147	-		CA265_RS04910	0.44	+0.2
1,170,158	+		CA265_RS04910	0.45	+0.5
1,170,166	+		CA265_RS04910	0.46	-0.1
1,170,167	-		CA265_RS04910	0.46	+0.1
1,170,214	-		CA265_RS04910	0.48	+1.5
1,170,217	+		CA265_RS04910	0.49	-0.7
1,170,217	+		CA265_RS04910	0.49	+0.3
1,170,218	-		CA265_RS04910	0.49	-0.2
1,170,218	-		CA265_RS04910	0.49	+0.4
1,170,220	-		CA265_RS04910	0.49	+0.9
1,170,220	-		CA265_RS04910	0.49	-0.6
1,170,298	+		CA265_RS04910	0.53	+0.6
1,170,299	-		CA265_RS04910	0.53	-0.1