Experiment: R2A with Chloramphenicol 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS03440 and CA265_RS03445 overlap by 1 nucleotides CA265_RS03445 and CA265_RS03450 are separated by 65 nucleotides CA265_RS03450 and CA265_RS03455 are separated by 20 nucleotides CA265_RS03455 and CA265_RS03460 are separated by 187 nucleotides
CA265_RS03440: CA265_RS03440 - hypothetical protein, at 831,561 to 832,874
_RS03440
CA265_RS03445: CA265_RS03445 - S-adenosylmethionine decarboxylase, at 832,874 to 833,227
_RS03445
CA265_RS03450: CA265_RS03450 - hypothetical protein, at 833,293 to 833,688
_RS03450
CA265_RS03455: CA265_RS03455 - cysteine methyltransferase, at 833,709 to 834,188
_RS03455
CA265_RS03460: CA265_RS03460 - ABC transporter permease, at 834,376 to 835,041
_RS03460
Position (kb) 833
834 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 832.322 kb on + strand, within CA265_RS03440 at 832.368 kb on + strand, within CA265_RS03440 at 832.369 kb on - strand, within CA265_RS03440 at 832.412 kb on + strand, within CA265_RS03440 at 832.414 kb on + strand, within CA265_RS03440 at 832.418 kb on + strand, within CA265_RS03440 at 832.433 kb on - strand, within CA265_RS03440 at 832.446 kb on - strand, within CA265_RS03440 at 832.447 kb on + strand, within CA265_RS03440 at 832.455 kb on - strand, within CA265_RS03440 at 832.473 kb on - strand, within CA265_RS03440 at 832.473 kb on - strand, within CA265_RS03440 at 832.482 kb on - strand, within CA265_RS03440 at 832.575 kb on - strand, within CA265_RS03440 at 832.575 kb on - strand, within CA265_RS03440 at 832.576 kb on + strand, within CA265_RS03440 at 832.576 kb on + strand, within CA265_RS03440 at 832.629 kb on + strand, within CA265_RS03440 at 832.630 kb on - strand, within CA265_RS03440 at 832.652 kb on + strand, within CA265_RS03440 at 832.674 kb on + strand, within CA265_RS03440 at 832.795 kb on + strand at 832.806 kb on - strand at 832.806 kb on - strand at 832.861 kb on - strand at 832.905 kb on - strand at 832.905 kb on - strand at 832.925 kb on + strand, within CA265_RS03445 at 832.926 kb on - strand, within CA265_RS03445 at 833.020 kb on + strand, within CA265_RS03445 at 833.020 kb on + strand, within CA265_RS03445 at 833.020 kb on + strand, within CA265_RS03445 at 833.021 kb on - strand, within CA265_RS03445 at 833.026 kb on + strand, within CA265_RS03445 at 833.027 kb on - strand, within CA265_RS03445 at 833.114 kb on - strand, within CA265_RS03445 at 833.127 kb on - strand, within CA265_RS03445 at 833.127 kb on - strand, within CA265_RS03445 at 833.146 kb on + strand, within CA265_RS03445 at 833.147 kb on - strand, within CA265_RS03445 at 833.147 kb on - strand, within CA265_RS03445 at 833.204 kb on - strand at 833.220 kb on + strand at 833.220 kb on + strand at 833.240 kb on - strand at 833.240 kb on - strand at 833.260 kb on - strand at 833.270 kb on + strand at 833.318 kb on + strand at 833.457 kb on + strand, within CA265_RS03450 at 833.461 kb on + strand, within CA265_RS03450 at 833.494 kb on + strand, within CA265_RS03450 at 833.495 kb on - strand, within CA265_RS03450 at 833.495 kb on - strand, within CA265_RS03450 at 833.495 kb on - strand, within CA265_RS03450 at 833.543 kb on - strand, within CA265_RS03450 at 833.578 kb on - strand, within CA265_RS03450 at 833.635 kb on - strand, within CA265_RS03450 at 833.653 kb on + strand at 833.682 kb on + strand at 833.683 kb on - strand at 833.760 kb on + strand, within CA265_RS03455 at 833.760 kb on + strand, within CA265_RS03455 at 833.760 kb on + strand, within CA265_RS03455 at 833.760 kb on + strand, within CA265_RS03455 at 833.824 kb on - strand, within CA265_RS03455 at 833.886 kb on + strand, within CA265_RS03455 at 833.944 kb on - strand, within CA265_RS03455 at 834.054 kb on + strand, within CA265_RS03455 at 834.065 kb on + strand, within CA265_RS03455 at 834.111 kb on - strand, within CA265_RS03455 at 834.114 kb on + strand, within CA265_RS03455 at 834.115 kb on - strand, within CA265_RS03455 at 834.115 kb on - strand, within CA265_RS03455 at 834.115 kb on - strand, within CA265_RS03455 at 834.139 kb on - strand, within CA265_RS03455 at 834.139 kb on - strand, within CA265_RS03455 at 834.170 kb on + strand at 834.171 kb on - strand at 834.181 kb on + strand at 834.246 kb on - strand at 834.264 kb on - strand at 834.267 kb on + strand at 834.307 kb on - strand at 834.326 kb on + strand at 834.357 kb on + strand at 834.357 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Chloramphenicol 0.001 mg/ml remove 832,322 + CA265_RS03440 0.58 -0.2 832,368 + CA265_RS03440 0.61 -0.1 832,369 - CA265_RS03440 0.61 -0.3 832,412 + CA265_RS03440 0.65 +0.6 832,414 + CA265_RS03440 0.65 +0.1 832,418 + CA265_RS03440 0.65 +0.1 832,433 - CA265_RS03440 0.66 +1.1 832,446 - CA265_RS03440 0.67 +0.7 832,447 + CA265_RS03440 0.67 -0.1 832,455 - CA265_RS03440 0.68 -0.5 832,473 - CA265_RS03440 0.69 -1.9 832,473 - CA265_RS03440 0.69 +0.0 832,482 - CA265_RS03440 0.70 +0.5 832,575 - CA265_RS03440 0.77 -0.6 832,575 - CA265_RS03440 0.77 -1.2 832,576 + CA265_RS03440 0.77 +0.0 832,576 + CA265_RS03440 0.77 -0.8 832,629 + CA265_RS03440 0.81 +0.2 832,630 - CA265_RS03440 0.81 +0.2 832,652 + CA265_RS03440 0.83 -0.7 832,674 + CA265_RS03440 0.85 +1.9 832,795 + -0.3 832,806 - +1.2 832,806 - -1.6 832,861 - -0.0 832,905 - +0.3 832,905 - +0.4 832,925 + CA265_RS03445 0.14 -0.9 832,926 - CA265_RS03445 0.15 -0.8 833,020 + CA265_RS03445 0.41 +2.0 833,020 + CA265_RS03445 0.41 -0.3 833,020 + CA265_RS03445 0.41 +0.0 833,021 - CA265_RS03445 0.42 -0.1 833,026 + CA265_RS03445 0.43 -0.6 833,027 - CA265_RS03445 0.43 +0.3 833,114 - CA265_RS03445 0.68 -2.1 833,127 - CA265_RS03445 0.71 -0.2 833,127 - CA265_RS03445 0.71 +0.8 833,146 + CA265_RS03445 0.77 +0.0 833,147 - CA265_RS03445 0.77 +0.4 833,147 - CA265_RS03445 0.77 +0.1 833,204 - -0.4 833,220 + -0.5 833,220 + +0.5 833,240 - +1.2 833,240 - -0.1 833,260 - +0.7 833,270 + +0.2 833,318 + +2.8 833,457 + CA265_RS03450 0.41 -1.0 833,461 + CA265_RS03450 0.42 -1.0 833,494 + CA265_RS03450 0.51 +0.4 833,495 - CA265_RS03450 0.51 +1.3 833,495 - CA265_RS03450 0.51 +0.6 833,495 - CA265_RS03450 0.51 +0.1 833,543 - CA265_RS03450 0.63 -0.6 833,578 - CA265_RS03450 0.72 +0.8 833,635 - CA265_RS03450 0.86 +0.4 833,653 + +0.7 833,682 + +0.3 833,683 - +0.4 833,760 + CA265_RS03455 0.11 -0.3 833,760 + CA265_RS03455 0.11 +1.1 833,760 + CA265_RS03455 0.11 +0.4 833,760 + CA265_RS03455 0.11 +0.7 833,824 - CA265_RS03455 0.24 -0.2 833,886 + CA265_RS03455 0.37 +0.0 833,944 - CA265_RS03455 0.49 +0.3 834,054 + CA265_RS03455 0.72 -0.6 834,065 + CA265_RS03455 0.74 -0.5 834,111 - CA265_RS03455 0.84 +0.1 834,114 + CA265_RS03455 0.84 -0.7 834,115 - CA265_RS03455 0.85 -0.1 834,115 - CA265_RS03455 0.85 -0.4 834,115 - CA265_RS03455 0.85 -0.1 834,139 - CA265_RS03455 0.90 -0.9 834,139 - CA265_RS03455 0.90 +1.1 834,170 + -0.3 834,171 - +0.8 834,181 + -0.5 834,246 - -0.1 834,264 - -1.3 834,267 + -0.2 834,307 - -0.5 834,326 + +0.6 834,357 + +0.5 834,357 + -1.1
Or see this region's nucleotide sequence