Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3283

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3282 and Ac3H11_3283 are separated by 315 nucleotidesAc3H11_3283 and Ac3H11_3284 overlap by 4 nucleotides Ac3H11_3282 - NAD-specific glutamate dehydrogenase (EC 1.4.1.2); NADP-specific glutamate dehydrogenase (EC 1.4.1.4), at 13,708 to 15,012 _3282 Ac3H11_3283 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 15,328 to 16,983 _3283 Ac3H11_3284 - Sugar transporter, at 16,980 to 18,344 _3284 Position (kb) 15 16 17Strain fitness (log2 ratio) -2 -1 0 1 2at 15.010 kb on + strandat 15.011 kb on - strandat 15.011 kb on - strandat 15.113 kb on + strandat 15.113 kb on + strandat 15.113 kb on + strandat 15.114 kb on - strandat 15.114 kb on - strandat 15.114 kb on - strandat 15.114 kb on - strandat 15.235 kb on + strandat 15.235 kb on + strandat 15.236 kb on - strandat 15.239 kb on + strandat 15.239 kb on + strandat 15.240 kb on - strandat 15.240 kb on - strandat 15.240 kb on - strandat 15.245 kb on + strandat 15.245 kb on + strandat 15.245 kb on + strandat 15.245 kb on + strandat 15.246 kb on - strandat 15.246 kb on - strandat 15.302 kb on + strandat 15.302 kb on + strandat 15.302 kb on + strandat 15.302 kb on + strandat 15.303 kb on - strandat 15.303 kb on - strandat 15.303 kb on - strandat 15.303 kb on - strandat 15.303 kb on - strandat 15.303 kb on - strandat 15.303 kb on - strandat 15.466 kb on + strandat 15.466 kb on + strandat 15.466 kb on + strandat 15.466 kb on + strandat 15.490 kb on + strandat 15.491 kb on - strandat 15.491 kb on - strandat 15.574 kb on + strand, within Ac3H11_3283at 15.575 kb on - strand, within Ac3H11_3283at 15.657 kb on + strand, within Ac3H11_3283at 15.658 kb on - strand, within Ac3H11_3283at 15.658 kb on - strand, within Ac3H11_3283at 15.658 kb on - strand, within Ac3H11_3283at 15.658 kb on - strand, within Ac3H11_3283at 15.658 kb on - strand, within Ac3H11_3283at 15.775 kb on + strand, within Ac3H11_3283at 15.775 kb on + strand, within Ac3H11_3283at 15.775 kb on + strand, within Ac3H11_3283at 15.775 kb on + strand, within Ac3H11_3283at 15.775 kb on + strand, within Ac3H11_3283at 15.776 kb on - strand, within Ac3H11_3283at 15.776 kb on - strand, within Ac3H11_3283at 15.776 kb on - strand, within Ac3H11_3283at 15.892 kb on + strand, within Ac3H11_3283at 15.892 kb on + strand, within Ac3H11_3283at 15.907 kb on + strand, within Ac3H11_3283at 15.907 kb on + strand, within Ac3H11_3283at 15.907 kb on + strand, within Ac3H11_3283at 15.907 kb on + strand, within Ac3H11_3283at 16.174 kb on + strand, within Ac3H11_3283at 16.181 kb on + strand, within Ac3H11_3283at 16.181 kb on + strand, within Ac3H11_3283at 16.181 kb on + strand, within Ac3H11_3283at 16.181 kb on + strand, within Ac3H11_3283at 16.182 kb on - strand, within Ac3H11_3283at 16.182 kb on - strand, within Ac3H11_3283at 16.204 kb on + strand, within Ac3H11_3283at 16.204 kb on + strand, within Ac3H11_3283at 16.205 kb on - strand, within Ac3H11_3283at 16.280 kb on - strand, within Ac3H11_3283at 16.280 kb on - strand, within Ac3H11_3283at 16.280 kb on - strand, within Ac3H11_3283at 16.562 kb on - strand, within Ac3H11_3283at 16.562 kb on - strand, within Ac3H11_3283at 16.580 kb on - strand, within Ac3H11_3283at 17.091 kb on + strandat 17.229 kb on + strand, within Ac3H11_3284at 17.229 kb on + strand, within Ac3H11_3284at 17.229 kb on + strand, within Ac3H11_3284at 17.230 kb on - strand, within Ac3H11_3284at 17.230 kb on - strand, within Ac3H11_3284at 17.230 kb on - strand, within Ac3H11_3284at 17.230 kb on - strand, within Ac3H11_3284at 17.238 kb on + strand, within Ac3H11_3284at 17.239 kb on - strand, within Ac3H11_3284at 17.239 kb on - strand, within Ac3H11_3284at 17.334 kb on + strand, within Ac3H11_3284at 17.334 kb on + strand, within Ac3H11_3284at 17.334 kb on + strand, within Ac3H11_3284at 17.334 kb on + strand, within Ac3H11_3284at 17.334 kb on + strand, within Ac3H11_3284at 17.334 kb on + strand, within Ac3H11_3284at 17.334 kb on + strand, within Ac3H11_3284at 17.334 kb on + strand, within Ac3H11_3284at 17.334 kb on + strand, within Ac3H11_3284at 17.334 kb on + strand, within Ac3H11_3284at 17.334 kb on + strand, within Ac3H11_3284at 17.334 kb on + strand, within Ac3H11_3284at 17.334 kb on + strand, within Ac3H11_3284at 17.335 kb on - strand, within Ac3H11_3284at 17.335 kb on - strand, within Ac3H11_3284at 17.335 kb on - strand, within Ac3H11_3284at 17.335 kb on - strand, within Ac3H11_3284at 17.335 kb on - strand, within Ac3H11_3284at 17.335 kb on - strand, within Ac3H11_3284at 17.335 kb on - strand, within Ac3H11_3284at 17.335 kb on - strand, within Ac3H11_3284at 17.376 kb on + strand, within Ac3H11_3284at 17.376 kb on + strand, within Ac3H11_3284at 17.377 kb on - strand, within Ac3H11_3284at 17.409 kb on + strand, within Ac3H11_3284at 17.526 kb on + strand, within Ac3H11_3284at 17.527 kb on - strand, within Ac3H11_3284at 17.527 kb on - strand, within Ac3H11_3284at 17.766 kb on + strand, within Ac3H11_3284at 17.766 kb on + strand, within Ac3H11_3284at 17.766 kb on + strand, within Ac3H11_3284at 17.766 kb on + strand, within Ac3H11_3284at 17.766 kb on + strand, within Ac3H11_3284at 17.767 kb on - strand, within Ac3H11_3284at 17.767 kb on - strand, within Ac3H11_3284at 17.767 kb on - strand, within Ac3H11_3284at 17.767 kb on - strand, within Ac3H11_3284at 17.778 kb on + strand, within Ac3H11_3284at 17.778 kb on + strand, within Ac3H11_3284at 17.778 kb on + strand, within Ac3H11_3284at 17.779 kb on - strand, within Ac3H11_3284at 17.779 kb on - strand, within Ac3H11_3284at 17.779 kb on - strand, within Ac3H11_3284at 17.857 kb on + strand, within Ac3H11_3284at 17.857 kb on + strand, within Ac3H11_3284at 17.857 kb on + strand, within Ac3H11_3284at 17.858 kb on - strand, within Ac3H11_3284at 17.858 kb on - strand, within Ac3H11_3284at 17.858 kb on - strandat 17.858 kb on - strand, within Ac3H11_3284at 17.858 kb on - strand, within Ac3H11_3284at 17.858 kb on - strand, within Ac3H11_3284at 17.858 kb on - strand, within Ac3H11_3284at 17.858 kb on - strand, within Ac3H11_3284at 17.858 kb on - strand, within Ac3H11_3284at 17.858 kb on - strand, within Ac3H11_3284at 17.898 kb on + strand, within Ac3H11_3284at 17.898 kb on + strand, within Ac3H11_3284at 17.898 kb on + strand, within Ac3H11_3284at 17.899 kb on - strand, within Ac3H11_3284at 17.943 kb on + strand, within Ac3H11_3284at 17.943 kb on + strand, within Ac3H11_3284at 17.944 kb on - strand, within Ac3H11_3284

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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15,010 + -0.5
15,011 - -0.1
15,011 - -0.9
15,113 + +0.6
15,113 + +0.1
15,113 + -0.8
15,114 - +0.4
15,114 - -0.0
15,114 - +1.0
15,114 - +0.1
15,235 + -0.1
15,235 + -0.7
15,236 - +0.9
15,239 + +0.6
15,239 + -0.1
15,240 - -1.1
15,240 - +0.5
15,240 - +0.0
15,245 + -0.9
15,245 + +0.7
15,245 + -0.3
15,245 + -1.6
15,246 - -1.6
15,246 - -0.2
15,302 + +0.2
15,302 + +0.4
15,302 + -0.9
15,302 + +0.2
15,303 - +0.1
15,303 - +0.9
15,303 - -1.9
15,303 - +0.1
15,303 - -0.1
15,303 - -0.3
15,303 - -0.4
15,466 + +1.9
15,466 + -0.2
15,466 + +0.7
15,466 + -1.5
15,490 + -0.9
15,491 - +0.0
15,491 - -0.1
15,574 + Ac3H11_3283 0.15 -1.2
15,575 - Ac3H11_3283 0.15 +0.2
15,657 + Ac3H11_3283 0.20 -1.4
15,658 - Ac3H11_3283 0.20 +0.4
15,658 - Ac3H11_3283 0.20 +0.3
15,658 - Ac3H11_3283 0.20 -0.9
15,658 - Ac3H11_3283 0.20 -0.3
15,658 - Ac3H11_3283 0.20 -0.2
15,775 + Ac3H11_3283 0.27 +0.2
15,775 + Ac3H11_3283 0.27 +0.9
15,775 + Ac3H11_3283 0.27 +0.2
15,775 + Ac3H11_3283 0.27 +0.2
15,775 + Ac3H11_3283 0.27 +1.0
15,776 - Ac3H11_3283 0.27 +1.1
15,776 - Ac3H11_3283 0.27 -0.4
15,776 - Ac3H11_3283 0.27 +2.5
15,892 + Ac3H11_3283 0.34 +0.4
15,892 + Ac3H11_3283 0.34 +0.8
15,907 + Ac3H11_3283 0.35 +0.4
15,907 + Ac3H11_3283 0.35 -1.8
15,907 + Ac3H11_3283 0.35 -0.4
15,907 + Ac3H11_3283 0.35 -0.7
16,174 + Ac3H11_3283 0.51 -0.0
16,181 + Ac3H11_3283 0.52 -0.4
16,181 + Ac3H11_3283 0.52 -1.0
16,181 + Ac3H11_3283 0.52 -0.1
16,181 + Ac3H11_3283 0.52 -1.4
16,182 - Ac3H11_3283 0.52 +0.9
16,182 - Ac3H11_3283 0.52 -0.6
16,204 + Ac3H11_3283 0.53 -0.9
16,204 + Ac3H11_3283 0.53 +1.9
16,205 - Ac3H11_3283 0.53 -1.2
16,280 - Ac3H11_3283 0.57 +0.2
16,280 - Ac3H11_3283 0.57 -0.4
16,280 - Ac3H11_3283 0.57 -0.2
16,562 - Ac3H11_3283 0.75 -1.2
16,562 - Ac3H11_3283 0.75 +0.0
16,580 - Ac3H11_3283 0.76 -1.1
17,091 + -0.0
17,229 + Ac3H11_3284 0.18 -0.7
17,229 + Ac3H11_3284 0.18 -0.4
17,229 + Ac3H11_3284 0.18 -0.3
17,230 - Ac3H11_3284 0.18 -0.5
17,230 - Ac3H11_3284 0.18 -0.4
17,230 - Ac3H11_3284 0.18 +0.9
17,230 - Ac3H11_3284 0.18 +0.4
17,238 + Ac3H11_3284 0.19 -0.2
17,239 - Ac3H11_3284 0.19 +0.4
17,239 - Ac3H11_3284 0.19 +0.0
17,334 + Ac3H11_3284 0.26 -0.6
17,334 + Ac3H11_3284 0.26 +0.4
17,334 + Ac3H11_3284 0.26 -0.4
17,334 + Ac3H11_3284 0.26 -0.4
17,334 + Ac3H11_3284 0.26 -1.0
17,334 + Ac3H11_3284 0.26 +0.8
17,334 + Ac3H11_3284 0.26 +0.6
17,334 + Ac3H11_3284 0.26 -0.9
17,334 + Ac3H11_3284 0.26 -1.6
17,334 + Ac3H11_3284 0.26 +0.7
17,334 + Ac3H11_3284 0.26 +0.1
17,334 + Ac3H11_3284 0.26 +0.8
17,334 + Ac3H11_3284 0.26 +0.5
17,335 - Ac3H11_3284 0.26 -0.8
17,335 - Ac3H11_3284 0.26 +0.8
17,335 - Ac3H11_3284 0.26 +0.3
17,335 - Ac3H11_3284 0.26 -0.2
17,335 - Ac3H11_3284 0.26 -0.8
17,335 - Ac3H11_3284 0.26 +0.2
17,335 - Ac3H11_3284 0.26 -0.9
17,335 - Ac3H11_3284 0.26 +1.2
17,376 + Ac3H11_3284 0.29 +0.7
17,376 + Ac3H11_3284 0.29 +0.4
17,377 - Ac3H11_3284 0.29 -0.9
17,409 + Ac3H11_3284 0.31 -1.1
17,526 + Ac3H11_3284 0.40 -1.4
17,527 - Ac3H11_3284 0.40 -0.8
17,527 - Ac3H11_3284 0.40 -2.0
17,766 + Ac3H11_3284 0.58 -1.6
17,766 + Ac3H11_3284 0.58 +0.0
17,766 + Ac3H11_3284 0.58 +1.4
17,766 + Ac3H11_3284 0.58 -0.5
17,766 + Ac3H11_3284 0.58 +0.8
17,767 - Ac3H11_3284 0.58 -0.8
17,767 - Ac3H11_3284 0.58 +0.7
17,767 - Ac3H11_3284 0.58 -0.2
17,767 - Ac3H11_3284 0.58 -0.4
17,778 + Ac3H11_3284 0.58 -0.2
17,778 + Ac3H11_3284 0.58 +0.4
17,778 + Ac3H11_3284 0.58 +0.7
17,779 - Ac3H11_3284 0.59 -1.0
17,779 - Ac3H11_3284 0.59 -0.1
17,779 - Ac3H11_3284 0.59 -0.1
17,857 + Ac3H11_3284 0.64 -1.2
17,857 + Ac3H11_3284 0.64 +0.7
17,857 + Ac3H11_3284 0.64 -0.8
17,858 - Ac3H11_3284 0.64 -0.6
17,858 - Ac3H11_3284 0.64 -0.5
17,858 - +1.9
17,858 - Ac3H11_3284 0.64 -0.0
17,858 - Ac3H11_3284 0.64 +0.3
17,858 - Ac3H11_3284 0.64 -0.9
17,858 - Ac3H11_3284 0.64 -0.5
17,858 - Ac3H11_3284 0.64 -0.1
17,858 - Ac3H11_3284 0.64 +0.4
17,858 - Ac3H11_3284 0.64 +0.4
17,898 + Ac3H11_3284 0.67 -0.8
17,898 + Ac3H11_3284 0.67 -0.6
17,898 + Ac3H11_3284 0.67 +0.4
17,899 - Ac3H11_3284 0.67 -0.4
17,943 + Ac3H11_3284 0.71 +0.8
17,943 + Ac3H11_3284 0.71 -0.7
17,944 - Ac3H11_3284 0.71 +0.3

Or see this region's nucleotide sequence