Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS23325 and AZOBR_RS23330 are separated by 610 nucleotides AZOBR_RS23330 and AZOBR_RS23335 are separated by 24 nucleotides
AZOBR_RS23325: AZOBR_RS23325 - RNA polymerase sigma70, at 258,881 to 259,414
_RS23325
AZOBR_RS23330: AZOBR_RS23330 - hypothetical protein, at 260,025 to 262,013
_RS23330
AZOBR_RS23335: AZOBR_RS23335 - fecR protein, at 262,038 to 263,030
_RS23335
Position (kb) 260
261
262
263 Strain fitness (log2 ratio) -1
0
1 at 259.227 kb on + strand, within AZOBR_RS23325 at 259.785 kb on + strand at 259.786 kb on - strand at 259.904 kb on + strand at 260.154 kb on + strand at 260.184 kb on + strand at 260.184 kb on + strand at 260.185 kb on - strand at 260.244 kb on + strand, within AZOBR_RS23330 at 260.244 kb on + strand, within AZOBR_RS23330 at 260.253 kb on + strand, within AZOBR_RS23330 at 260.254 kb on - strand, within AZOBR_RS23330 at 260.265 kb on + strand, within AZOBR_RS23330 at 260.265 kb on + strand, within AZOBR_RS23330 at 260.265 kb on + strand, within AZOBR_RS23330 at 260.322 kb on + strand, within AZOBR_RS23330 at 260.323 kb on - strand, within AZOBR_RS23330 at 260.323 kb on - strand, within AZOBR_RS23330 at 260.323 kb on - strand, within AZOBR_RS23330 at 260.323 kb on - strand, within AZOBR_RS23330 at 260.323 kb on - strand, within AZOBR_RS23330 at 260.323 kb on - strand, within AZOBR_RS23330 at 260.323 kb on - strand, within AZOBR_RS23330 at 260.478 kb on + strand, within AZOBR_RS23330 at 260.544 kb on + strand, within AZOBR_RS23330 at 260.544 kb on + strand, within AZOBR_RS23330 at 260.545 kb on - strand, within AZOBR_RS23330 at 260.545 kb on - strand, within AZOBR_RS23330 at 260.545 kb on - strand, within AZOBR_RS23330 at 260.875 kb on - strand, within AZOBR_RS23330 at 261.070 kb on - strand, within AZOBR_RS23330 at 261.081 kb on + strand, within AZOBR_RS23330 at 261.082 kb on - strand, within AZOBR_RS23330 at 261.141 kb on + strand, within AZOBR_RS23330 at 261.142 kb on - strand, within AZOBR_RS23330 at 261.297 kb on + strand, within AZOBR_RS23330 at 261.298 kb on - strand, within AZOBR_RS23330 at 261.324 kb on + strand, within AZOBR_RS23330 at 261.325 kb on - strand, within AZOBR_RS23330 at 261.520 kb on - strand, within AZOBR_RS23330 at 261.609 kb on + strand, within AZOBR_RS23330 at 261.777 kb on + strand, within AZOBR_RS23330 at 261.777 kb on + strand, within AZOBR_RS23330 at 261.777 kb on + strand, within AZOBR_RS23330 at 261.778 kb on - strand, within AZOBR_RS23330 at 261.792 kb on + strand, within AZOBR_RS23330 at 261.792 kb on + strand, within AZOBR_RS23330 at 261.792 kb on + strand, within AZOBR_RS23330 at 261.792 kb on + strand, within AZOBR_RS23330 at 261.792 kb on + strand, within AZOBR_RS23330 at 261.792 kb on + strand, within AZOBR_RS23330 at 261.793 kb on - strand, within AZOBR_RS23330 at 261.793 kb on - strand, within AZOBR_RS23330 at 261.793 kb on - strand, within AZOBR_RS23330 at 261.793 kb on - strand, within AZOBR_RS23330 at 261.825 kb on + strand at 261.826 kb on - strand at 261.852 kb on + strand at 262.002 kb on + strand at 262.139 kb on - strand, within AZOBR_RS23335 at 262.201 kb on + strand, within AZOBR_RS23335 at 262.201 kb on + strand, within AZOBR_RS23335 at 262.202 kb on - strand, within AZOBR_RS23335 at 262.531 kb on + strand, within AZOBR_RS23335 at 262.531 kb on + strand, within AZOBR_RS23335 at 262.532 kb on - strand, within AZOBR_RS23335 at 262.532 kb on - strand, within AZOBR_RS23335 at 262.582 kb on + strand, within AZOBR_RS23335 at 262.583 kb on - strand, within AZOBR_RS23335
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 259,227 + AZOBR_RS23325 0.65 -0.0 259,785 + +0.2 259,786 - -0.2 259,904 + -0.5 260,154 + -0.1 260,184 + -0.6 260,184 + +0.5 260,185 - +0.0 260,244 + AZOBR_RS23330 0.11 +0.1 260,244 + AZOBR_RS23330 0.11 -0.2 260,253 + AZOBR_RS23330 0.11 +0.9 260,254 - AZOBR_RS23330 0.12 +0.1 260,265 + AZOBR_RS23330 0.12 -0.8 260,265 + AZOBR_RS23330 0.12 +0.4 260,265 + AZOBR_RS23330 0.12 +0.3 260,322 + AZOBR_RS23330 0.15 -0.6 260,323 - AZOBR_RS23330 0.15 -0.9 260,323 - AZOBR_RS23330 0.15 +0.0 260,323 - AZOBR_RS23330 0.15 -0.1 260,323 - AZOBR_RS23330 0.15 +0.8 260,323 - AZOBR_RS23330 0.15 +0.2 260,323 - AZOBR_RS23330 0.15 -0.7 260,323 - AZOBR_RS23330 0.15 +0.3 260,478 + AZOBR_RS23330 0.23 +0.0 260,544 + AZOBR_RS23330 0.26 -0.1 260,544 + AZOBR_RS23330 0.26 -0.6 260,545 - AZOBR_RS23330 0.26 -0.3 260,545 - AZOBR_RS23330 0.26 -0.4 260,545 - AZOBR_RS23330 0.26 -0.0 260,875 - AZOBR_RS23330 0.43 +0.0 261,070 - AZOBR_RS23330 0.53 -0.3 261,081 + AZOBR_RS23330 0.53 -0.4 261,082 - AZOBR_RS23330 0.53 +0.5 261,141 + AZOBR_RS23330 0.56 -0.3 261,142 - AZOBR_RS23330 0.56 -0.5 261,297 + AZOBR_RS23330 0.64 -1.3 261,298 - AZOBR_RS23330 0.64 -0.2 261,324 + AZOBR_RS23330 0.65 +0.3 261,325 - AZOBR_RS23330 0.65 -0.7 261,520 - AZOBR_RS23330 0.75 -0.5 261,609 + AZOBR_RS23330 0.80 -0.5 261,777 + AZOBR_RS23330 0.88 -0.9 261,777 + AZOBR_RS23330 0.88 -0.1 261,777 + AZOBR_RS23330 0.88 -1.0 261,778 - AZOBR_RS23330 0.88 -0.7 261,792 + AZOBR_RS23330 0.89 -0.8 261,792 + AZOBR_RS23330 0.89 +0.8 261,792 + AZOBR_RS23330 0.89 -0.0 261,792 + AZOBR_RS23330 0.89 +0.0 261,792 + AZOBR_RS23330 0.89 +0.4 261,792 + AZOBR_RS23330 0.89 +0.4 261,793 - AZOBR_RS23330 0.89 -0.2 261,793 - AZOBR_RS23330 0.89 -0.0 261,793 - AZOBR_RS23330 0.89 -0.4 261,793 - AZOBR_RS23330 0.89 +0.7 261,825 + +0.0 261,826 - -0.3 261,852 + +0.5 262,002 + +0.1 262,139 - AZOBR_RS23335 0.10 +0.2 262,201 + AZOBR_RS23335 0.16 -0.3 262,201 + AZOBR_RS23335 0.16 -0.6 262,202 - AZOBR_RS23335 0.17 -0.1 262,531 + AZOBR_RS23335 0.50 -0.4 262,531 + AZOBR_RS23335 0.50 -0.2 262,532 - AZOBR_RS23335 0.50 +0.2 262,532 - AZOBR_RS23335 0.50 +1.5 262,582 + AZOBR_RS23335 0.55 -0.4 262,583 - AZOBR_RS23335 0.55 +0.1
Or see this region's nucleotide sequence