Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26250

Experiment: Thallium(I) acetate 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26245 and AO353_26250 overlap by 26 nucleotidesAO353_26250 and AO353_26255 overlap by 4 nucleotides AO353_26245: AO353_26245 - phage head morphogenesis protein, at 5,769,730 to 5,770,815 _26245 AO353_26250: AO353_26250 - hypothetical protein, at 5,770,790 to 5,772,205 _26250 AO353_26255: AO353_26255 - terminase, at 5,772,202 to 5,773,689 _26255 Position (kb) 5770 5771 5772 5773Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5769.856 kb on + strand, within AO353_26245at 5769.924 kb on - strand, within AO353_26245at 5769.924 kb on - strand, within AO353_26245at 5769.926 kb on + strand, within AO353_26245at 5769.927 kb on - strand, within AO353_26245at 5769.927 kb on - strand, within AO353_26245at 5769.927 kb on - strand, within AO353_26245at 5769.997 kb on + strandat 5769.997 kb on + strand, within AO353_26245at 5769.998 kb on - strand, within AO353_26245at 5769.998 kb on - strand, within AO353_26245at 5769.998 kb on - strand, within AO353_26245at 5770.550 kb on + strandat 5770.550 kb on + strand, within AO353_26245at 5770.550 kb on + strand, within AO353_26245at 5770.550 kb on + strand, within AO353_26245at 5770.550 kb on + strand, within AO353_26245at 5770.551 kb on - strand, within AO353_26245at 5770.551 kb on - strand, within AO353_26245at 5770.551 kb on - strand, within AO353_26245at 5770.551 kb on - strand, within AO353_26245at 5770.551 kb on - strand, within AO353_26245at 5770.551 kb on - strand, within AO353_26245at 5770.606 kb on - strand, within AO353_26245at 5770.661 kb on + strand, within AO353_26245at 5770.923 kb on + strandat 5770.924 kb on - strandat 5770.924 kb on - strandat 5771.058 kb on + strand, within AO353_26250at 5771.058 kb on + strand, within AO353_26250at 5771.058 kb on + strand, within AO353_26250at 5771.059 kb on - strand, within AO353_26250at 5771.059 kb on - strand, within AO353_26250at 5771.059 kb on - strand, within AO353_26250at 5771.088 kb on + strand, within AO353_26250at 5771.088 kb on + strand, within AO353_26250at 5771.088 kb on + strand, within AO353_26250at 5771.089 kb on - strand, within AO353_26250at 5771.089 kb on - strand, within AO353_26250at 5771.108 kb on + strand, within AO353_26250at 5771.108 kb on + strand, within AO353_26250at 5771.108 kb on + strand, within AO353_26250at 5771.109 kb on - strandat 5771.170 kb on + strand, within AO353_26250at 5771.170 kb on + strand, within AO353_26250at 5771.170 kb on + strand, within AO353_26250at 5771.171 kb on - strand, within AO353_26250at 5771.171 kb on - strand, within AO353_26250at 5771.171 kb on - strand, within AO353_26250at 5771.171 kb on - strand, within AO353_26250at 5771.171 kb on - strand, within AO353_26250at 5771.171 kb on - strand, within AO353_26250at 5771.171 kb on - strand, within AO353_26250at 5771.194 kb on + strand, within AO353_26250at 5771.195 kb on - strand, within AO353_26250at 5771.245 kb on + strand, within AO353_26250at 5771.325 kb on + strand, within AO353_26250at 5771.325 kb on + strand, within AO353_26250at 5771.325 kb on + strand, within AO353_26250at 5771.325 kb on + strand, within AO353_26250at 5771.325 kb on + strand, within AO353_26250at 5771.325 kb on + strand, within AO353_26250at 5771.325 kb on + strand, within AO353_26250at 5771.326 kb on - strand, within AO353_26250at 5771.326 kb on - strand, within AO353_26250at 5771.326 kb on - strand, within AO353_26250at 5771.418 kb on + strand, within AO353_26250at 5771.418 kb on + strand, within AO353_26250at 5771.419 kb on - strand, within AO353_26250at 5771.467 kb on - strand, within AO353_26250at 5771.545 kb on + strand, within AO353_26250at 5771.574 kb on - strand, within AO353_26250at 5771.784 kb on + strand, within AO353_26250at 5771.785 kb on - strand, within AO353_26250at 5771.838 kb on + strand, within AO353_26250at 5771.839 kb on - strand, within AO353_26250at 5771.895 kb on + strand, within AO353_26250at 5771.895 kb on + strand, within AO353_26250at 5771.895 kb on + strand, within AO353_26250at 5771.895 kb on + strand, within AO353_26250at 5771.895 kb on + strand, within AO353_26250at 5771.896 kb on - strand, within AO353_26250at 5771.896 kb on - strand, within AO353_26250at 5771.896 kb on - strand, within AO353_26250at 5771.934 kb on + strand, within AO353_26250at 5771.935 kb on - strand, within AO353_26250at 5771.935 kb on - strand, within AO353_26250at 5772.085 kb on + strandat 5772.085 kb on + strandat 5772.085 kb on + strandat 5772.085 kb on + strandat 5772.086 kb on - strandat 5772.086 kb on - strandat 5772.093 kb on + strandat 5772.093 kb on + strandat 5772.093 kb on + strandat 5772.093 kb on + strandat 5772.094 kb on - strandat 5772.094 kb on - strandat 5772.094 kb on - strandat 5772.225 kb on + strandat 5772.225 kb on + strandat 5772.225 kb on + strandat 5772.256 kb on + strandat 5772.415 kb on + strand, within AO353_26255at 5772.416 kb on - strand, within AO353_26255at 5772.482 kb on + strand, within AO353_26255at 5772.482 kb on + strand, within AO353_26255at 5772.482 kb on + strand, within AO353_26255at 5772.483 kb on - strand, within AO353_26255at 5772.483 kb on - strand, within AO353_26255at 5772.483 kb on - strand, within AO353_26255at 5772.590 kb on + strand, within AO353_26255at 5772.591 kb on - strand, within AO353_26255at 5772.591 kb on - strand, within AO353_26255at 5772.623 kb on + strand, within AO353_26255at 5772.623 kb on + strand, within AO353_26255at 5772.624 kb on - strand, within AO353_26255at 5772.624 kb on - strand, within AO353_26255at 5772.624 kb on - strand, within AO353_26255at 5772.653 kb on + strand, within AO353_26255at 5772.654 kb on - strand, within AO353_26255at 5772.656 kb on + strand, within AO353_26255at 5772.657 kb on - strand, within AO353_26255at 5772.671 kb on + strand, within AO353_26255at 5772.815 kb on + strand, within AO353_26255at 5772.818 kb on + strand, within AO353_26255at 5772.818 kb on + strand, within AO353_26255at 5772.818 kb on + strand, within AO353_26255at 5772.818 kb on + strand, within AO353_26255at 5772.818 kb on + strand, within AO353_26255at 5772.818 kb on + strand, within AO353_26255at 5772.819 kb on - strand, within AO353_26255at 5772.819 kb on - strand, within AO353_26255at 5772.912 kb on - strand, within AO353_26255at 5772.971 kb on + strand, within AO353_26255at 5772.971 kb on + strand, within AO353_26255at 5772.972 kb on - strand, within AO353_26255at 5773.019 kb on + strand, within AO353_26255at 5773.128 kb on - strand, within AO353_26255

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Per-strain Table

Position Strand Gene LocusTag Fraction Thallium(I) acetate 0.016 mg/ml
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5,769,856 + AO353_26245 0.12 -0.9
5,769,924 - AO353_26245 0.18 +1.3
5,769,924 - AO353_26245 0.18 -0.3
5,769,926 + AO353_26245 0.18 +0.3
5,769,927 - AO353_26245 0.18 +0.4
5,769,927 - AO353_26245 0.18 +1.0
5,769,927 - AO353_26245 0.18 +1.5
5,769,997 + -0.3
5,769,997 + AO353_26245 0.25 -0.3
5,769,998 - AO353_26245 0.25 -1.3
5,769,998 - AO353_26245 0.25 -0.3
5,769,998 - AO353_26245 0.25 -0.3
5,770,550 + +0.7
5,770,550 + AO353_26245 0.76 +0.4
5,770,550 + AO353_26245 0.76 -0.3
5,770,550 + AO353_26245 0.76 +0.8
5,770,550 + AO353_26245 0.76 -0.6
5,770,551 - AO353_26245 0.76 +0.7
5,770,551 - AO353_26245 0.76 +1.3
5,770,551 - AO353_26245 0.76 -1.6
5,770,551 - AO353_26245 0.76 +0.2
5,770,551 - AO353_26245 0.76 +2.9
5,770,551 - AO353_26245 0.76 -0.1
5,770,606 - AO353_26245 0.81 -1.3
5,770,661 + AO353_26245 0.86 +2.2
5,770,923 + +0.7
5,770,924 - -1.0
5,770,924 - +0.2
5,771,058 + AO353_26250 0.19 -0.1
5,771,058 + AO353_26250 0.19 +0.5
5,771,058 + AO353_26250 0.19 -0.9
5,771,059 - AO353_26250 0.19 -0.9
5,771,059 - AO353_26250 0.19 -0.9
5,771,059 - AO353_26250 0.19 +0.7
5,771,088 + AO353_26250 0.21 -0.3
5,771,088 + AO353_26250 0.21 +0.1
5,771,088 + AO353_26250 0.21 -2.3
5,771,089 - AO353_26250 0.21 +1.6
5,771,089 - AO353_26250 0.21 +1.3
5,771,108 + AO353_26250 0.22 -0.6
5,771,108 + AO353_26250 0.22 -1.0
5,771,108 + AO353_26250 0.22 -0.3
5,771,109 - +0.7
5,771,170 + AO353_26250 0.27 -1.3
5,771,170 + AO353_26250 0.27 +1.7
5,771,170 + AO353_26250 0.27 -0.3
5,771,171 - AO353_26250 0.27 +0.7
5,771,171 - AO353_26250 0.27 -0.9
5,771,171 - AO353_26250 0.27 -0.3
5,771,171 - AO353_26250 0.27 +0.7
5,771,171 - AO353_26250 0.27 +0.7
5,771,171 - AO353_26250 0.27 +0.7
5,771,171 - AO353_26250 0.27 +0.3
5,771,194 + AO353_26250 0.29 +0.1
5,771,195 - AO353_26250 0.29 -0.7
5,771,245 + AO353_26250 0.32 -0.3
5,771,325 + AO353_26250 0.38 +1.0
5,771,325 + AO353_26250 0.38 -0.3
5,771,325 + AO353_26250 0.38 -0.3
5,771,325 + AO353_26250 0.38 +2.9
5,771,325 + AO353_26250 0.38 -0.9
5,771,325 + AO353_26250 0.38 +0.0
5,771,325 + AO353_26250 0.38 +1.3
5,771,326 - AO353_26250 0.38 -0.3
5,771,326 - AO353_26250 0.38 -0.3
5,771,326 - AO353_26250 0.38 -1.3
5,771,418 + AO353_26250 0.44 -2.3
5,771,418 + AO353_26250 0.44 +0.1
5,771,419 - AO353_26250 0.44 -1.1
5,771,467 - AO353_26250 0.48 -0.0
5,771,545 + AO353_26250 0.53 +0.3
5,771,574 - AO353_26250 0.55 +0.7
5,771,784 + AO353_26250 0.70 -0.3
5,771,785 - AO353_26250 0.70 +0.6
5,771,838 + AO353_26250 0.74 +0.0
5,771,839 - AO353_26250 0.74 +0.3
5,771,895 + AO353_26250 0.78 -0.3
5,771,895 + AO353_26250 0.78 +0.0
5,771,895 + AO353_26250 0.78 -0.3
5,771,895 + AO353_26250 0.78 +0.7
5,771,895 + AO353_26250 0.78 -0.3
5,771,896 - AO353_26250 0.78 -2.3
5,771,896 - AO353_26250 0.78 -0.7
5,771,896 - AO353_26250 0.78 -0.3
5,771,934 + AO353_26250 0.81 -0.5
5,771,935 - AO353_26250 0.81 +1.5
5,771,935 - AO353_26250 0.81 +1.5
5,772,085 + -0.3
5,772,085 + -0.3
5,772,085 + +0.7
5,772,085 + -1.9
5,772,086 - +1.3
5,772,086 - -0.3
5,772,093 + -1.0
5,772,093 + +1.3
5,772,093 + +0.3
5,772,093 + +0.7
5,772,094 - +0.7
5,772,094 - +1.0
5,772,094 - -1.6
5,772,225 + -2.3
5,772,225 + -0.7
5,772,225 + +1.7
5,772,256 + +0.2
5,772,415 + AO353_26255 0.14 -0.3
5,772,416 - AO353_26255 0.14 +1.7
5,772,482 + AO353_26255 0.19 +0.3
5,772,482 + AO353_26255 0.19 +0.3
5,772,482 + AO353_26255 0.19 +1.3
5,772,483 - AO353_26255 0.19 +0.5
5,772,483 - AO353_26255 0.19 -1.0
5,772,483 - AO353_26255 0.19 +0.3
5,772,590 + AO353_26255 0.26 +0.7
5,772,591 - AO353_26255 0.26 -0.0
5,772,591 - AO353_26255 0.26 -1.0
5,772,623 + AO353_26255 0.28 +0.8
5,772,623 + AO353_26255 0.28 -0.3
5,772,624 - AO353_26255 0.28 -0.0
5,772,624 - AO353_26255 0.28 -1.1
5,772,624 - AO353_26255 0.28 +1.0
5,772,653 + AO353_26255 0.30 -0.3
5,772,654 - AO353_26255 0.30 +0.2
5,772,656 + AO353_26255 0.31 +0.9
5,772,657 - AO353_26255 0.31 -1.0
5,772,671 + AO353_26255 0.32 -0.3
5,772,815 + AO353_26255 0.41 +0.3
5,772,818 + AO353_26255 0.41 +1.4
5,772,818 + AO353_26255 0.41 -1.9
5,772,818 + AO353_26255 0.41 -0.3
5,772,818 + AO353_26255 0.41 +1.5
5,772,818 + AO353_26255 0.41 +0.3
5,772,818 + AO353_26255 0.41 +1.3
5,772,819 - AO353_26255 0.41 -1.0
5,772,819 - AO353_26255 0.41 +0.5
5,772,912 - AO353_26255 0.48 +0.4
5,772,971 + AO353_26255 0.52 -0.3
5,772,971 + AO353_26255 0.52 +1.3
5,772,972 - AO353_26255 0.52 -0.6
5,773,019 + AO353_26255 0.55 -1.9
5,773,128 - AO353_26255 0.62 +0.2

Or see this region's nucleotide sequence